Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73710 |
| fragaria_vesca | FvH4_6g44930 |
| malus_domestica | MD09G1091700.v1.1 MD17G1081600.v1.1 |
| prunus_persica | Prupe.3G233300_v2.0.a1 |
| pyrus_communis | pycom09g01730 pycom17g07990 |
| rosa_chinensis | RchiOBHm_Chr2g0162121 |
| rosa_laevigata | RLG00000021324 |
| rosa_multiflora | Rmu_sc0004020.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00088280 |
| rosa_rugosa | Rorug02G0494800 |
| rosa_samantha | Rh2AG561300 Rh2BG574400 Rh2CG544500 Rh2DG584300 |
| rosa_wichuraiana | Rw2G046480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 738, 1161 |
| AccB1I | GGYRCC | 1 cut(s) | 2084 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1858, 2140, 2187 |
| AccII | CGCG | 1 cut(s) | 2627 |
| AccIII | TCCGGA | 1 cut(s) | 661 |
| AciI | CCGC | 6 cut(s) | 337, 1103, 1526, 1756, 2304, 3198 |
| AcoI | YGGCCR | 3 cut(s) | 1822, 3199, 3279 |
| AcuI | CTGAAG | 3 cut(s) | 1419, 2169, 2949 |
| AcvI | CACGTG | 1 cut(s) | 1282 |
| AcyI | GRCGYC | 1 cut(s) | 985 |
| AfaI | GTAC | 7 cut(s) | 971, 1850, 2055, 2828, 3019, 3071, 3167 |
| AflIII | ACRYGT | 5 cut(s) | 567, 1281, 1469, 2673, 3035 |
| AjnI | CCWGG | 3 cut(s) | 1372, 1728, 2700 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1532, 1564 |
| AleI | CACNNNNGTG | 1 cut(s) | 625 |
| Alw21I | GWGCWC | 5 cut(s) | 62, 196, 752, 768, 1816 |
| Alw26I | GTCTC | 2 cut(s) | 1264, 1310 |
| Alw44I | GTGCAC | 1 cut(s) | 748 |
| Ama87I | CYCGRG | 1 cut(s) | 2564 |
| Aor13HI | TCCGGA | 1 cut(s) | 661 |
| AoxI | GGCC | 6 cut(s) | 604, 693, 1667, 1822, 3199, 3279 |
| ApaLI | GTGCAC | 1 cut(s) | 748 |
| ApeKI | GCWGC | 5 cut(s) | 998, 1205, 1475, 2347, 2645 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 361, 393 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 445, 2675 |
| AspLEI | GCGC | 1 cut(s) | 2563 |
| AspS9I | GGNCC | 6 cut(s) | 693, 1033, 1303, 1512, 1668, 1726 |
| AsuC2I | CCSGG | 1 cut(s) | 754 |
| AsuHPI | GGTGA | 7 cut(s) | 78, 398, 806, 1463, 1727, 2305, 2515 |
| AsuII | TTCGAA | 2 cut(s) | 171, 254 |
| AvaI | CYCGRG | 1 cut(s) | 2564 |
| AvaII | GGWCC | 4 cut(s) | 1033, 1303, 1512, 1726 |
| BaeGI | GKGCMC | 2 cut(s) | 752, 2089 |
| BalI | TGGCCA | 1 cut(s) | 1824 |
| BanI | GGYRCC | 1 cut(s) | 2084 |
| BanII | GRGCYC | 4 cut(s) | 62, 196, 499, 768 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2765, 2797 |
| BauI | CACGAG | 1 cut(s) | 189 |
| BbrPI | CACGTG | 1 cut(s) | 1282 |
| BbsI | GAAGAC | 3 cut(s) | 318, 2524, 2703 |
| Bbv12I | GWGCWC | 5 cut(s) | 62, 196, 752, 768, 1816 |
| BbvCI | CCTCAGC | 1 cut(s) | 1521 |
| BbvI | GCAGC | 5 cut(s) | 1010, 1192, 1487, 2359, 2632 |
| BccI | CCATC | 6 cut(s) | 117, 1117, 2134, 2374, 3059, 3271 |
| BceAI | ACGGC | 1 cut(s) | 3266 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2108, 2142 |
| BciT130I | CCWGG | 3 cut(s) | 1374, 1730, 2702 |
| BciVI | GTATCC | 1 cut(s) | 901 |
| BclI | TGATCA | 2 cut(s) | 1590, 1905 |
| BcnI | CCSGG | 1 cut(s) | 754 |
| BcoDI | GTCTC | 2 cut(s) | 1264, 1310 |
| BfaI | CTAG | 8 cut(s) | 129, 140, 219, 776, 1784, 2078, 2508, 2732 |
| BfmI | CTRYAG | 2 cut(s) | 342, 1534 |
| BfoI | RGCGCY | 1 cut(s) | 2564 |
| BfuI | GTATCC | 1 cut(s) | 901 |
| BglII | AGATCT | 2 cut(s) | 2074, 2968 |
| BisI | GCNGC | 6 cut(s) | 999, 1206, 1476, 2348, 2646, 3199 |
| BlpI | GCTNAGC | 1 cut(s) | 1115 |
| BlsI | GCNGC | 6 cut(s) | 1000, 1207, 1477, 2349, 2647, 3200 |
| BmcAI | AGTACT | 1 cut(s) | 2055 |
| Bme1390I | CCNGG | 4 cut(s) | 754, 1374, 1730, 2702 |
| Bme18I | GGWCC | 4 cut(s) | 1033, 1303, 1512, 1726 |
| BmeT110I | CYCGRG | 1 cut(s) | 2564 |
| BmgT120I | GGNCC | 6 cut(s) | 693, 1033, 1303, 1512, 1668, 1726 |
| BmiI | GGNNCC | 7 cut(s) | 1034, 1035, 2086, 2706, 2932, 3128, 3219 |
| BmrFI | CCNGG | 4 cut(s) | 754, 1374, 1730, 2702 |
| BpiI | GAAGAC | 3 cut(s) | 318, 2524, 2703 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2897, 2929 |
| BpmI | CTGGAG | 1 cut(s) | 2723 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1115 |
| Bpu14I | TTCGAA | 2 cut(s) | 171, 254 |
| BpuEI | CTTGAG | 2 cut(s) | 405, 2993 |
| BpuMI | CCSGG | 1 cut(s) | 754 |
| Bsa29I | ATCGAT | 1 cut(s) | 2118 |
| BsaAI | YACGTR | 3 cut(s) | 570, 1282, 1683 |
| BsaHI | GRCGYC | 1 cut(s) | 985 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| BsaWI | WCCGGW | 2 cut(s) | 661, 3020 |
| Bse118I | RCCGGY | 2 cut(s) | 602, 2787 |
| Bse1I | ACTGG | 2 cut(s) | 1441, 2526 |
| Bse3DI | GCAATG | 1 cut(s) | 582 |
| BseAI | TCCGGA | 1 cut(s) | 661 |
| BseBI | CCWGG | 3 cut(s) | 1374, 1730, 2702 |
| BseCI | ATCGAT | 1 cut(s) | 2118 |
| BseDI | CCNNGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| BseMI | GCAATG | 1 cut(s) | 582 |
| BseMII | CTCAG | 9 cut(s) | 209, 512, 638, 831, 1512, 1722, 2165, 2928, 3208 |
| BseNI | ACTGG | 2 cut(s) | 1441, 2526 |
| BseSI | GKGCMC | 2 cut(s) | 752, 2089 |
| BseXI | GCAGC | 5 cut(s) | 1010, 1192, 1487, 2359, 2632 |
| BseYI | CCCAGC | 2 cut(s) | 436, 2648 |
| BsgI | GTGCAG | 2 cut(s) | 1494, 1663 |
| Bsh1236I | CGCG | 1 cut(s) | 2627 |
| BshFI | GGCC | 6 cut(s) | 606, 695, 1669, 1824, 3201, 3281 |
| BshNI | GGYRCC | 1 cut(s) | 2084 |
| BshVI | ATCGAT | 1 cut(s) | 2118 |
| BsiHKAI | GWGCWC | 5 cut(s) | 62, 196, 752, 768, 1816 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2564 |
| BsiSI | CCGG | 5 cut(s) | 603, 662, 753, 2788, 3021 |
| BslFI | GGGAC | 4 cut(s) | 1019, 1675, 2312, 2425 |
| BsmAI | GTCTC | 2 cut(s) | 1264, 1310 |
| BsmBI | CGTCTC | 1 cut(s) | 1264 |
| BsmFI | GGGAC | 4 cut(s) | 1019, 1675, 2312, 2425 |
| BsmI | GAATGC | 2 cut(s) | 1363, 2691 |
| BsnI | GGCC | 6 cut(s) | 606, 695, 1669, 1824, 3201, 3281 |
| BsoBI | CYCGRG | 1 cut(s) | 2564 |
| Bsp119I | TTCGAA | 2 cut(s) | 171, 254 |
| Bsp1286I | GDGCHC | 7 cut(s) | 62, 196, 499, 752, 768, 1816, 2089 |
| Bsp13I | TCCGGA | 1 cut(s) | 661 |
| Bsp1407I | TGTACA | 3 cut(s) | 2826, 3069, 3165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1115 |
| Bsp19I | CCATGG | 2 cut(s) | 30, 2134 |
| Bsp68I | TCGCGA | 1 cut(s) | 2627 |
| BspACI | CCGC | 6 cut(s) | 337, 1103, 1526, 1756, 2304, 3198 |
| BspANI | GGCC | 6 cut(s) | 606, 695, 1669, 1824, 3201, 3281 |
| BspCNI | CTCAG | 9 cut(s) | 208, 511, 639, 830, 1513, 1721, 2166, 2927, 3207 |
| BspDI | ATCGAT | 1 cut(s) | 2118 |
| BspEI | TCCGGA | 1 cut(s) | 661 |
| BspFNI | CGCG | 1 cut(s) | 2627 |
| BspHI | TCATGA | 2 cut(s) | 1587, 2679 |
| BspLI | GGNNCC | 7 cut(s) | 1034, 1035, 2086, 2706, 2932, 3128, 3219 |
| BspT104I | TTCGAA | 2 cut(s) | 171, 254 |
| BspT107I | GGYRCC | 1 cut(s) | 2084 |
| BsrDI | GCAATG | 1 cut(s) | 582 |
| BsrFI | RCCGGY | 2 cut(s) | 602, 2787 |
| BsrGI | TGTACA | 3 cut(s) | 2826, 3069, 3165 |
| BsrI | ACTGG | 2 cut(s) | 1441, 2526 |
| BssAI | RCCGGY | 2 cut(s) | 602, 2787 |
| BssECI | CCNNGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| BssNI | GRCGYC | 1 cut(s) | 985 |
| BssSI | CACGAG | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| Bst2BI | CACGAG | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 3 cut(s) | 1374, 1730, 2702 |
| Bst4CI | ACNGT | 9 cut(s) | 71, 296, 685, 1217, 1321, 2283, 3004, 3069, 3243 |
| Bst6I | CTCTTC | 3 cut(s) | 1643, 1962, 2796 |
| BstACI | GRCGYC | 1 cut(s) | 985 |
| BstAUI | TGTACA | 3 cut(s) | 2826, 3069, 3165 |
| BstBAI | YACGTR | 3 cut(s) | 570, 1282, 1683 |
| BstBI | TTCGAA | 2 cut(s) | 171, 254 |
| BstC8I | GCNNGC | 6 cut(s) | 604, 1816, 1826, 2243, 2514, 2553 |
| BstDSI | CCRYGG | 2 cut(s) | 30, 2134 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 611, 2012 |
| BstFNI | CGCG | 1 cut(s) | 2627 |
| BstH2I | RGCGCY | 1 cut(s) | 2564 |
| BstHHI | GCGC | 1 cut(s) | 2563 |
| BstMAI | GTCTC | 2 cut(s) | 1264, 1310 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1793, 1815, 2633, 2642 |
| BstNI | CCWGG | 3 cut(s) | 1374, 1730, 2702 |
| BstNSI | RCATGY | 5 cut(s) | 1473, 2245, 2555, 2677, 3039 |
| BstSCI | CCNGG | 4 cut(s) | 752, 1372, 1728, 2700 |
| BstSFI | CTRYAG | 2 cut(s) | 342, 1534 |
| BstSLI | GKGCMC | 2 cut(s) | 752, 2089 |
| BstUI | CGCG | 1 cut(s) | 2627 |
| BstV1I | GCAGC | 5 cut(s) | 1010, 1192, 1487, 2359, 2632 |
| BstV2I | GAAGAC | 3 cut(s) | 318, 2524, 2703 |
| BstX2I | RGATCY | 2 cut(s) | 2074, 2968 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1448 |
| BstYI | RGATCY | 2 cut(s) | 2074, 2968 |
| Bsu15I | ATCGAT | 1 cut(s) | 2118 |
| BsuI | GTATCC | 1 cut(s) | 901 |
| BsuRI | GGCC | 6 cut(s) | 606, 695, 1669, 1824, 3201, 3281 |
| BsuTUI | ATCGAT | 1 cut(s) | 2118 |
| BtgI | CCRYGG | 2 cut(s) | 30, 2134 |
| BtsI | GCAGTG | 1 cut(s) | 2469 |
| BtsIMutI | CAGTG | 5 cut(s) | 251, 849, 2469, 2533, 3065 |
| BtuMI | TCGCGA | 1 cut(s) | 2627 |
| Cac8I | GCNNGC | 6 cut(s) | 604, 1816, 1826, 2243, 2514, 2553 |
| CciI | TCATGA | 2 cut(s) | 1587, 2679 |
| CfoI | GCGC | 1 cut(s) | 2563 |
| Cfr10I | RCCGGY | 2 cut(s) | 602, 2787 |
| Cfr13I | GGNCC | 6 cut(s) | 693, 1033, 1303, 1512, 1668, 1726 |
| ClaI | ATCGAT | 1 cut(s) | 2118 |
| CseI | GACGC | 2 cut(s) | 974, 2476 |
| Csp6I | GTAC | 7 cut(s) | 970, 1849, 2054, 2827, 3018, 3070, 3166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 850, 885 |
| CviQI | GTAC | 7 cut(s) | 970, 1849, 2054, 2827, 3018, 3070, 3166 |
| DraI | TTTAAA | 1 cut(s) | 2419 |
| EaeI | YGGCCR | 3 cut(s) | 1822, 3199, 3279 |
| Eam1104I | CTCTTC | 3 cut(s) | 1643, 1962, 2796 |
| EarI | CTCTTC | 3 cut(s) | 1643, 1962, 2796 |
| Ecl136II | GAGCTC | 3 cut(s) | 60, 194, 766 |
| Eco130I | CCWWGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| Eco24I | GRGCYC | 4 cut(s) | 62, 196, 499, 768 |
| Eco47I | GGWCC | 4 cut(s) | 1033, 1303, 1512, 1726 |
| Eco53kI | GAGCTC | 3 cut(s) | 60, 194, 766 |
| Eco57I | CTGAAG | 3 cut(s) | 1419, 2169, 2949 |
| Eco72I | CACGTG | 1 cut(s) | 1282 |
| Eco88I | CYCGRG | 1 cut(s) | 2564 |
| EcoICRI | GAGCTC | 3 cut(s) | 60, 194, 766 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 611, 2012 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1033 |
| EcoRI | GAATTC | 3 cut(s) | 184, 784, 876 |
| EcoRII | CCWGG | 3 cut(s) | 1372, 1728, 2700 |
| EcoT14I | CCWWGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| EcoT22I | ATGCAT | 3 cut(s) | 1492, 2553, 2995 |
| EcoT38I | GRGCYC | 4 cut(s) | 62, 196, 499, 768 |
| ErhI | CCWWGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| Esp3I | CGTCTC | 1 cut(s) | 1264 |
| FaqI | GGGAC | 4 cut(s) | 1019, 1675, 2312, 2425 |
| FauI | CCCGC | 1 cut(s) | 1749 |
| FauNDI | CATATG | 2 cut(s) | 1492, 2206 |
| FbaI | TGATCA | 2 cut(s) | 1590, 1905 |
| Fnu4HI | GCNGC | 6 cut(s) | 999, 1206, 1476, 2348, 2646, 3199 |
| FriOI | GRGCYC | 4 cut(s) | 62, 196, 499, 768 |
| Fsp4HI | GCNGC | 6 cut(s) | 999, 1206, 1476, 2348, 2646, 3199 |
| FspBI | CTAG | 8 cut(s) | 129, 140, 219, 776, 1784, 2078, 2508, 2732 |
| GlaI | GCGC | 1 cut(s) | 2562 |
| GluI | GCNGC | 6 cut(s) | 999, 1206, 1476, 2348, 2646, 3199 |
| GsaI | CCCAGC | 2 cut(s) | 440, 2652 |
| GsuI | CTGGAG | 1 cut(s) | 2723 |
| HaeII | RGCGCY | 1 cut(s) | 2564 |
| HaeIII | GGCC | 6 cut(s) | 606, 695, 1669, 1824, 3201, 3281 |
| HapII | CCGG | 5 cut(s) | 603, 662, 753, 2788, 3021 |
| HgaI | GACGC | 2 cut(s) | 974, 2476 |
| HhaI | GCGC | 1 cut(s) | 2563 |
| Hin1I | GRCGYC | 1 cut(s) | 985 |
| Hin6I | GCGC | 1 cut(s) | 2561 |
| HinP1I | GCGC | 1 cut(s) | 2561 |
| HincII | GTYRAC | 1 cut(s) | 3239 |
| HindII | GTYRAC | 1 cut(s) | 3239 |
| HindIII | AAGCTT | 5 cut(s) | 95, 1406, 1596, 1613, 1626 |
| HpaII | CCGG | 5 cut(s) | 603, 662, 753, 2788, 3021 |
| HphI | GGTGA | 7 cut(s) | 78, 398, 806, 1463, 1727, 2305, 2515 |
| Hpy166II | GTNNAC | 7 cut(s) | 750, 849, 1726, 1849, 2032, 3166, 3239 |
| Hpy8I | GTNNAC | 7 cut(s) | 750, 849, 1726, 1849, 2032, 3166, 3239 |
| Hpy99I | CGWCG | 4 cut(s) | 78, 2627, 2663, 3276 |
| HpyCH4III | ACNGT | 9 cut(s) | 71, 296, 685, 1217, 1321, 2283, 3004, 3069, 3243 |
| HpyCH4IV | ACGT | 7 cut(s) | 569, 1281, 1584, 1682, 2622, 2712, 2720 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1793, 1815, 2633, 2642 |
| HpySE526I | ACGT | 7 cut(s) | 569, 1281, 1584, 1682, 2622, 2712, 2720 |
| Hsp92I | GRCGYC | 1 cut(s) | 985 |
| HspAI | GCGC | 1 cut(s) | 2561 |
| KflI | GGGWCCC | 1 cut(s) | 1033 |
| Kpn2I | TCCGGA | 1 cut(s) | 661 |
| KroI | GCCGGC | 1 cut(s) | 602 |
| KroNI | GCCGGC | 1 cut(s) | 604 |
| Ksp22I | TGATCA | 2 cut(s) | 1590, 1905 |
| LmnI | GCTCC | 4 cut(s) | 32, 2355, 2704, 3223 |
| Lsp1109I | GCAGC | 5 cut(s) | 1010, 1192, 1487, 2359, 2632 |
| MaeI | CTAG | 8 cut(s) | 129, 140, 219, 776, 1784, 2078, 2508, 2732 |
| MaeII | ACGT | 7 cut(s) | 569, 1281, 1584, 1682, 2622, 2712, 2720 |
| MaeIII | GTNAC | 9 cut(s) | 20, 670, 794, 892, 1958, 2383, 2464, 2716, 3061 |
| MfeI | CAATTG | 2 cut(s) | 1839, 2454 |
| MflI | RGATCY | 2 cut(s) | 2074, 2968 |
| MhlI | GDGCHC | 7 cut(s) | 62, 196, 499, 752, 768, 1816, 2089 |
| MlsI | TGGCCA | 1 cut(s) | 1824 |
| MluNI | TGGCCA | 1 cut(s) | 1824 |
| MlyI | GAGTC | 7 cut(s) | 356, 791, 1979, 2027, 2486, 2576, 2957 |
| MmeI | TCCRAC | 3 cut(s) | 506, 1077, 3265 |
| Mox20I | TGGCCA | 1 cut(s) | 1824 |
| Mph1103I | ATGCAT | 3 cut(s) | 1492, 2553, 2995 |
| MroI | TCCGGA | 1 cut(s) | 661 |
| MroNI | GCCGGC | 1 cut(s) | 602 |
| MroXI | GAANNNNTTC | 2 cut(s) | 445, 2675 |
| MscI | TGGCCA | 1 cut(s) | 1824 |
| MslI | CAYNNNNRTG | 5 cut(s) | 625, 1385, 1700, 2678, 2684 |
| Msp20I | TGGCCA | 1 cut(s) | 1824 |
| MspA1I | CMGCKG | 1 cut(s) | 3198 |
| MspI | CCGG | 5 cut(s) | 603, 662, 753, 2788, 3021 |
| MspR9I | CCNGG | 4 cut(s) | 754, 1374, 1730, 2702 |
| MunI | CAATTG | 2 cut(s) | 1839, 2454 |
| Mva1269I | GAATGC | 2 cut(s) | 1363, 2691 |
| MvaI | CCWGG | 3 cut(s) | 1374, 1730, 2702 |
| MvnI | CGCG | 1 cut(s) | 2627 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1793, 1815, 2633, 2642 |
| NaeI | GCCGGC | 1 cut(s) | 604 |
| NciI | CCSGG | 1 cut(s) | 754 |
| NcoI | CCATGG | 2 cut(s) | 30, 2134 |
| NdeI | CATATG | 2 cut(s) | 1492, 2206 |
| NgoMIV | GCCGGC | 1 cut(s) | 602 |
| NlaIV | GGNNCC | 7 cut(s) | 1034, 1035, 2086, 2706, 2932, 3128, 3219 |
| NmuCI | GTSAC | 3 cut(s) | 794, 1958, 2464 |
| NruI | TCGCGA | 1 cut(s) | 2627 |
| NsiI | ATGCAT | 3 cut(s) | 1492, 2553, 2995 |
| NspI | RCATGY | 5 cut(s) | 1473, 2245, 2555, 2677, 3039 |
| NspV | TTCGAA | 2 cut(s) | 171, 254 |
| OliI | CACNNNNGTG | 1 cut(s) | 625 |
| PaeI | GCATGC | 2 cut(s) | 2245, 2555 |
| PaeR7I | CTCGAG | 1 cut(s) | 2564 |
| PagI | TCATGA | 2 cut(s) | 1587, 2679 |
| PciI | ACATGT | 3 cut(s) | 1469, 2673, 3035 |
| PctI | GAATGC | 2 cut(s) | 1363, 2691 |
| PdiI | GCCGGC | 1 cut(s) | 604 |
| PdmI | GAANNNNTTC | 2 cut(s) | 445, 2675 |
| PfeI | GAWTC | 4 cut(s) | 241, 397, 1324, 2606 |
| PflFI | GACNNNGTC | 1 cut(s) | 1859 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1858, 2140, 2187 |
| PkrI | GCNGC | 6 cut(s) | 1000, 1207, 1477, 2349, 2647, 3200 |
| PleI | GAGTC | 7 cut(s) | 355, 791, 1978, 2027, 2485, 2575, 2956 |
| PmaCI | CACGTG | 1 cut(s) | 1282 |
| PmlI | CACGTG | 1 cut(s) | 1282 |
| PpsI | GAGTC | 7 cut(s) | 355, 791, 1978, 2027, 2485, 2575, 2956 |
| Ppu21I | YACGTR | 3 cut(s) | 570, 1282, 1683 |
| PpuMI | RGGWCCY | 1 cut(s) | 1033 |
| PscI | ACATGT | 3 cut(s) | 1469, 2673, 3035 |
| PsiI | TTATAA | 2 cut(s) | 738, 1161 |
| Psp124BI | GAGCTC | 3 cut(s) | 62, 196, 768 |
| Psp5II | RGGWCCY | 1 cut(s) | 1033 |
| Psp6I | CCWGG | 3 cut(s) | 1372, 1728, 2700 |
| PspCI | CACGTG | 1 cut(s) | 1282 |
| PspFI | CCCAGC | 2 cut(s) | 436, 2648 |
| PspGI | CCWGG | 3 cut(s) | 1372, 1728, 2700 |
| PspN4I | GGNNCC | 7 cut(s) | 1034, 1035, 2086, 2706, 2932, 3128, 3219 |
| PspPI | GGNCC | 6 cut(s) | 693, 1033, 1303, 1512, 1668, 1726 |
| PspPPI | RGGWCCY | 1 cut(s) | 1033 |
| PspXI | VCTCGAGB | 1 cut(s) | 2564 |
| PsuI | RGATCY | 2 cut(s) | 2074, 2968 |
| PsyI | GACNNNGTC | 1 cut(s) | 1859 |
| RruI | TCGCGA | 1 cut(s) | 2627 |
| RsaI | GTAC | 7 cut(s) | 971, 1850, 2055, 2828, 3019, 3071, 3167 |
| RsaNI | GTAC | 7 cut(s) | 970, 1849, 2054, 2827, 3018, 3070, 3166 |
| RseI | CAYNNNNRTG | 5 cut(s) | 625, 1385, 1700, 2678, 2684 |
| SacI | GAGCTC | 3 cut(s) | 62, 196, 768 |
| SatI | GCNGC | 6 cut(s) | 999, 1206, 1476, 2348, 2646, 3199 |
| Sau96I | GGNCC | 6 cut(s) | 693, 1033, 1303, 1512, 1668, 1726 |
| ScaI | AGTACT | 1 cut(s) | 2055 |
| SchI | GAGTC | 7 cut(s) | 356, 791, 1979, 2027, 2486, 2576, 2957 |
| ScrFI | CCNGG | 4 cut(s) | 754, 1374, 1730, 2702 |
| SduI | GDGCHC | 7 cut(s) | 62, 196, 499, 752, 768, 1816, 2089 |
| SfcI | CTRYAG | 2 cut(s) | 342, 1534 |
| Sfr274I | CTCGAG | 1 cut(s) | 2564 |
| SfuI | TTCGAA | 2 cut(s) | 171, 254 |
| SinI | GGWCC | 4 cut(s) | 1033, 1303, 1512, 1726 |
| SlaI | CTCGAG | 1 cut(s) | 2564 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 625, 1385, 1700, 2678, 2684 |
| SmlI | CTYRAG | 3 cut(s) | 420, 2564, 2972 |
| SmoI | CTYRAG | 3 cut(s) | 420, 2564, 2972 |
| SphI | GCATGC | 2 cut(s) | 2245, 2555 |
| SsiI | CCGC | 6 cut(s) | 337, 1103, 1526, 1756, 2304, 3198 |
| SspI | AATATT | 2 cut(s) | 2095, 2436 |
| SspMI | CTAG | 8 cut(s) | 129, 140, 219, 776, 1784, 2078, 2508, 2732 |
| SstI | GAGCTC | 3 cut(s) | 62, 196, 768 |
| StyD4I | CCNGG | 4 cut(s) | 752, 1372, 1728, 2700 |
| StyI | CCWWGG | 4 cut(s) | 30, 1819, 2134, 2181 |
| TaaI | ACNGT | 9 cut(s) | 71, 296, 685, 1217, 1321, 2283, 3004, 3069, 3243 |
| TaiI | ACGT | 7 cut(s) | 572, 1284, 1587, 1685, 2625, 2715, 2723 |
| TaqII | GACCGA | 1 cut(s) | 1529 |
| TatI | WGTACW | 4 cut(s) | 2053, 2826, 3069, 3165 |
| TauI | GCSGC | 1 cut(s) | 3201 |
| TfiI | GAWTC | 4 cut(s) | 241, 397, 1324, 2606 |
| TscAI | CASTG | 5 cut(s) | 251, 856, 2469, 2533, 3072 |
| TseFI | GTSAC | 3 cut(s) | 794, 1958, 2464 |
| TseI | GCWGC | 5 cut(s) | 998, 1205, 1475, 2347, 2645 |
| Tsp45I | GTSAC | 3 cut(s) | 794, 1958, 2464 |
| TspGWI | ACGGA | 3 cut(s) | 1926, 2342, 3289 |
| TspRI | CASTG | 5 cut(s) | 251, 856, 2469, 2533, 3072 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1859 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1858, 2140, 2187 |
| VneI | GTGCAC | 1 cut(s) | 748 |
| VpaK11BI | GGWCC | 4 cut(s) | 1033, 1303, 1512, 1726 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 611, 2012 |
| XbaI | TCTAGA | 2 cut(s) | 139, 2077 |
| XceI | RCATGY | 5 cut(s) | 1473, 2245, 2555, 2677, 3039 |
| XhoI | CTCGAG | 1 cut(s) | 2564 |
| XmnI | GAANNNNTTC | 2 cut(s) | 445, 2675 |
| XspI | CTAG | 8 cut(s) | 129, 140, 219, 776, 1784, 2078, 2508, 2732 |
| ZrmI | AGTACT | 1 cut(s) | 2055 |
| Zsp2I | ATGCAT | 3 cut(s) | 1492, 2553, 2995 |