Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016903

Physical Location & Seq

Genomic Coordinates Reverse (-)

34930056 .. 34932451

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAATGGAAGAGGTGGTGGTGCCAAACCCATTGATGATCTCTTTGAAGGAGGAAAATAAAAGCTGTGTAAACTATGCATTCAGGTGCAGTTGGGATATTTCAAGAGAGAAGAACCTGGTCTGTGTGACCAGTGGGAATTCATACCTGGGTTCTCACATAGTTAGAGCTCTTTTGGCGCACGGATACCTGGTTCGAGTCACCATTCAAAACCAAGAGGATTATGAAGACATGAAGAAGCTAATGAGAGATGAAGAGATACACCAGCTAGAGAGTGTTGTTGTGGCAAAGATGGGAAACTTGGATATGCTTTGTGATGCTTTTAGGGGTTGCCATGCAATTTTTCATAGCTCCTCCTTCATTGATCCACATGGTGTCACTGGTTATTCTGGACAGATGGCATTTCTTGAAACTGAAGGGGCAAAGAATGTGATAGAAGCTTGTGGGAGGGCAACATATGCGAAGAGATGCATCTTCACTTCCTCTCTTCTTGCCTGTATCTGGGCAGGCGATAGCGAGAACAAGGTCATTGATGAGTTTAGCTGGAGCAATGTAGAATTCTGCAGAGAAAACAAGCTTTGGCTGGCTTTGGGGAAGACCACTGCGGAGATAGCTTCTTGGAGAAAGTCGAAGGAAATGAAAGTTAATCTTGTGACAGTTTGCCCTGGCCTTCACATGGACCCATGTGCTCACCAGGACAACTATATACCCTATCTCAAAGGTGGCAAGGACATGCTTAAAAATGGTCACTTAGCCATTGAGGATGTGAAGAAGGCCGCAGAGGCGCACGTCTATGTTTATGAAGCCATGGATAATGGAGCATGTGGGAGATACCTATGCTTTGGGAAGGTTATAAGAACAAGAAGTGAAGCCATCGAACTAGAAAACAGCTTAAAAGTTCAGGGTTTGTTATCAGGAGGAGGAGGAAGCCATGAAGTCTCAGATGAAGAAGCAGATGCAGAAATAAACAGCATGCTTAGTAATGCAAAGCTTGTCAGATTGATTCAAACTTCTAAAAGATTATCGTGCAAGCTAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD NAD_binding_10

Protein Analysis

348

Amino Acids

38.64

Weight (kDa)

5.92

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	41 - 173	5.9e-06	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	43 - 164	6.9e-09	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45521
malus_domestica	MD09G1082100.v1.1
prunus_persica	Prupe.3G241700_v2.0.a1
pyrus_communis	pycom09g00860
rosa_chinensis	RchiOBHm_Chr2g0163471
rosa_laevigata	RLG00000021404
rosa_multiflora	Rmu_co8460151.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087290
rosa_rugosa	Rorug02G0503000
rosa_samantha	Rh2AG570000 Rh2BG582200 Rh2CG552000 Rh2DG592000
rosa_wichuraiana	Rw2G047190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	2 cut(s)	605, 777
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	139, 557
AcuI	CTGAAG	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	501, 676
AgsI	TTSAA	5 cut(s)	49, 105, 209, 410, 1007
AjiI	CACGTC	1 cut(s)	790
AjnI	CCWGG	5 cut(s)	117, 147, 189, 664, 693
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
Alw21I	GWGCWC	2 cut(s)	172, 691
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	667, 774
ApoI	RAATTY	2 cut(s)	139, 557
AspLEI	GCGC	2 cut(s)	181, 787
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	193, 683
AvaII	GGWCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	234, 602
Bbv12I	GWGCWC	2 cut(s)	172, 691
BccI	CCATC	3 cut(s)	286, 391, 881
BciT130I	CCWGG	5 cut(s)	119, 149, 191, 666, 695
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	943
BfaI	CTAG	3 cut(s)	269, 881, 1034
BfmI	CTRYAG	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	782
BisI	GCNGC	1 cut(s)	777
BlsI	GCNGC	1 cut(s)	778
Bme1390I	CCNGG	5 cut(s)	119, 149, 191, 666, 695
Bme18I	GGWCC	1 cut(s)	679
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	2 cut(s)	24, 681
BmrFI	CCNGG	5 cut(s)	119, 149, 191, 666, 695
BmsI	GCATC	4 cut(s)	307, 458, 480, 946
BpiI	GAAGAC	2 cut(s)	234, 602
BpmI	CTGGAG	1 cut(s)	565
BsaJI	CCNNGG	3 cut(s)	148, 664, 807
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 676
Bse1I	ACTGG	2 cut(s)	132, 385
Bse3DI	GCAATG	2 cut(s)	12, 556
BseBI	CCWGG	5 cut(s)	119, 149, 191, 666, 695
BseDI	CCNNGG	3 cut(s)	148, 664, 807
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	2 cut(s)	501, 676
BseMI	GCAATG	2 cut(s)	12, 556
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	2 cut(s)	132, 385
BseRI	GAGGAG	3 cut(s)	343, 933, 936
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	669, 776
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	172, 691
BslI	CCNNNNNNNGG	2 cut(s)	501, 676
BsmAI	GTCTC	1 cut(s)	943
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	669, 776
Bsp1286I	GDGCHC	2 cut(s)	172, 691
Bsp143I	GATC	2 cut(s)	39, 364
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	2 cut(s)	605, 777
BspANI	GGCC	2 cut(s)	669, 776
BspCNI	CTCAG	1 cut(s)	953
BspLI	GGNNCC	2 cut(s)	24, 681
BspMAI	CTGCAG	1 cut(s)	566
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	12, 556
BsrI	ACTGG	2 cut(s)	132, 385
BssECI	CCNNGG	3 cut(s)	148, 664, 807
BssMI	GATC	2 cut(s)	39, 364
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	5 cut(s)	119, 149, 191, 666, 695
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	4 cut(s)	6, 249, 458, 492
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	4 cut(s)	508, 585, 974, 1031
BstDEI	CTNAG	3 cut(s)	751, 940, 977
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	1 cut(s)	769
BstHHI	GCGC	2 cut(s)	181, 787
BstKTI	GATC	2 cut(s)	42, 367
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	2 cut(s)	39, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 458, 611, 782
BstNI	CCWGG	5 cut(s)	119, 149, 191, 666, 695
BstNSI	RCATGY	3 cut(s)	736, 825, 976
BstSCI	CCNGG	5 cut(s)	117, 147, 189, 664, 693
BstSFI	CTRYAG	1 cut(s)	562
BstV2I	GAAGAC	2 cut(s)	234, 602
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	669, 776
BtgI	CCRYGG	1 cut(s)	807
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	769
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	139, 378, 600
Cac8I	GCNNGC	4 cut(s)	508, 585, 974, 1031
CfoI	GCGC	2 cut(s)	181, 787
Cfr13I	GGNCC	1 cut(s)	679
CsiI	ACCWGGT	2 cut(s)	117, 189
DdeI	CTNAG	3 cut(s)	751, 940, 977
DpnI	GATC	2 cut(s)	41, 366
DpnII	GATC	2 cut(s)	39, 364
DraIII	CACNNNGTG	1 cut(s)	374
Eam1104I	CTCTTC	4 cut(s)	6, 249, 458, 492
EarI	CTCTTC	4 cut(s)	6, 249, 458, 492
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	170
EcoRI	GAATTC	2 cut(s)	139, 557
EcoRII	CCWGG	5 cut(s)	117, 147, 189, 664, 693
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	2 cut(s)	82, 473
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	807
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	777
FokI	GGATG	1 cut(s)	776
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	777
FspBI	CTAG	3 cut(s)	269, 881, 1034
GlaI	GCGC	2 cut(s)	180, 786
GluI	GCNGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	565
HaeIII	GGCC	2 cut(s)	669, 776
HhaI	GCGC	2 cut(s)	181, 787
Hin6I	GCGC	2 cut(s)	179, 785
HinP1I	GCGC	2 cut(s)	179, 785
HindIII	AAGCTT	3 cut(s)	438, 575, 989
HinfI	GANTC	2 cut(s)	198, 1003
HphI	GGTGA	2 cut(s)	193, 683
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	943, 998
Hpy188III	TCNNGA	4 cut(s)	105, 390, 407, 915
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	7 cut(s)	43, 367, 410, 625, 680, 766, 841
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	8 cut(s)	80, 90, 338, 471, 564, 959, 986, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 458, 611, 782
HpyF3I	CTNAG	3 cut(s)	751, 940, 977
HpySE526I	ACGT	1 cut(s)	789
HspAI	GCGC	2 cut(s)	179, 785
Kzo9I	GATC	2 cut(s)	39, 364
LmnI	GCTCC	3 cut(s)	356, 546, 818
LweI	GCATC	4 cut(s)	307, 458, 480, 946
MabI	ACCWGGT	2 cut(s)	117, 189
MaeI	CTAG	3 cut(s)	269, 881, 1034
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	5 cut(s)	127, 199, 376, 652, 746
MalI	GATC	2 cut(s)	41, 366
MboI	GATC	2 cut(s)	39, 364
MhlI	GDGCHC	2 cut(s)	172, 691
MluCI	AATT	3 cut(s)	139, 339, 557
MlyI	GAGTC	1 cut(s)	207
Mph1103I	ATGCAT	2 cut(s)	82, 473
MseI	TTAA	3 cut(s)	645, 738, 893
MslI	CAYNNNNRTG	2 cut(s)	85, 792
MspR9I	CCNGG	5 cut(s)	119, 149, 191, 666, 695
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	5 cut(s)	119, 149, 191, 666, 695
MwoI	GCNNNNNNNGC	4 cut(s)	176, 458, 611, 782
NcoI	CCATGG	1 cut(s)	807
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	39, 364
NlaIV	GGNNCC	2 cut(s)	24, 681
NmuCI	GTSAC	5 cut(s)	127, 199, 376, 652, 746
NsiI	ATGCAT	2 cut(s)	82, 473
NspI	RCATGY	3 cut(s)	736, 825, 976
PaeI	GCATGC	1 cut(s)	976
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	1003
PkrI	GCNGC	1 cut(s)	778
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	5 cut(s)	117, 147, 189, 664, 693
PspGI	CCWGG	5 cut(s)	117, 147, 189, 664, 693
PspN4I	GGNNCC	2 cut(s)	24, 681
PspPI	GGNCC	1 cut(s)	679
PstI	CTGCAG	1 cut(s)	566
RseI	CAYNNNNRTG	2 cut(s)	85, 792
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	645, 738, 893
SatI	GCNGC	1 cut(s)	777
Sau3AI	GATC	2 cut(s)	39, 364
Sau96I	GGNCC	1 cut(s)	679
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	5 cut(s)	119, 149, 191, 666, 695
SduI	GDGCHC	2 cut(s)	172, 691
SexAI	ACCWGGT	2 cut(s)	117, 189
SfaNI	GCATC	4 cut(s)	307, 458, 480, 946
SfcI	CTRYAG	1 cut(s)	562
SinI	GGWCC	1 cut(s)	679
SmiMI	CAYNNNNRTG	2 cut(s)	85, 792
SphI	GCATGC	1 cut(s)	976
Sse9I	AATT	3 cut(s)	139, 339, 557
SsiI	CCGC	2 cut(s)	605, 777
SspMI	CTAG	3 cut(s)	269, 881, 1034
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	5 cut(s)	117, 147, 189, 664, 693
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	3 cut(s)	196, 629, 876
TasI	AATT	3 cut(s)	139, 339, 557
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	1 cut(s)	1003
Tru1I	TTAA	3 cut(s)	645, 738, 893
Tru9I	TTAA	3 cut(s)	645, 738, 893
TscAI	CASTG	3 cut(s)	139, 385, 607
TseFI	GTSAC	5 cut(s)	127, 199, 376, 652, 746
Tsp45I	GTSAC	5 cut(s)	127, 199, 376, 652, 746
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	3 cut(s)	139, 385, 607
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	2 cut(s)	139, 557
XceI	RCATGY	3 cut(s)	736, 825, 976
XspI	CTAG	3 cut(s)	269, 881, 1034
Zsp2I	ATGCAT	2 cut(s)	82, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.