pycom09g00860

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016903
Physical Location & Seq
Forward (+)
655404 .. 657228
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00860.2

Sequence Viewer

Length: 1203 bp
ATGAAAAATTCTGGACGCAGTTGCAACTTTCCAAAGAATATGATTCTTGGCCAATCAAAGTTTAAAGCTGCATCACTTTCGAGCTGCCGTTGTTGTTTATATCTAGTGTTGCATGAGACTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCAATGGAAGAAATGGAAGTCCCAAAACATTTGATGTCCTCTTCGGGGGAGGAACATAAAATTTGTGTCAAAAATGCATTCAGCTGCAGTTTAGATGCAAGAGATAGGAGGCTGGTTTGTGTGACCAGTGGGAATTCTCACTTGGGTTCTCACATAGTTAGGGCACTATTGGCCCGGGGTTATTTGGTCCGAGTAACCATTCAAAATGAAGTGGATTTTGAGGACATGAAGAAGCTAATGAGAGGTGAAGAGATAAGCCAGTTGGAGTGCGTGGTTGTGGCAAAGATGGGTGATTTGGATAATCTCTGCGATGCCTTTAGAGGTTGCCATGCAATTTTTCACACCTCCTCTTTTATTGATCCACATGGTATCTCCGGTTATTCAGAAAAAATGGCATTTCTTGAAACTGAAGGGGCAAGAAATGTAATTGAAGCTTGTGGGAGGGCAGCATATGCAAGGAGATGCATCTTCACTTCCTCTCTCCTTGCTGCGATCTGGACAGGTGAAAACTACGAAGAAAAGAAGATCATCGATGAGTATAGCTGGACCAATGTGGAATTCTGCAGAGAAAACAAGCTTTGGTTAGCCCTAGGGAAGACCACAGCAGAGATGGCTTGTTGGAGGAAGTCCAAGGAAATGAAAGTCAATCTTGTTACTGTGTGCCCTGGCCTCCTAATGGATGCATCTCATCCAAATGCTCACATATCCACTTCCATACCATATCTTAAAGGTGGCAAGACAATGCTCAAACACTGTCGCCTGGCTGTGGATGACGTGAAGAAGGCGGCTAAGGCGCATGTCTGCGTTTACGAAGCGATGGACCATGGCGCCAGCGGGCGATACCTCAGCTTTGGGAAGGTTGTAACAAAAATGGCTGAAGCCATTGAGTTAGAGAATGGATTGAAGATTCATGGGTTGTTATCAGGAGAAGGACTTGAGGACTTGGGTGAAGAAACAGATGAAGAATTACAAAGCATGCTTAGTAATGCAAAGCTTGCCAGATTGATTGGAGCTTCACAAAAGTTGTCTTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD NAD_binding_10

Protein Analysis

401

Amino Acids

44.74

Weight (kDa)

7.18

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016903)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45521
malus_domestica MD09G1082100.v1.1
prunus_persica Prupe.3G241700_v2.0.a1
pyrus_communis pycom09g00860
rosa_chinensis RchiOBHm_Chr2g0163471
rosa_laevigata RLG00000021404
rosa_multiflora Rmu_co8460151.1_g000001
rosa_roxburghii Rroxscaffold_2G00087290
rosa_rugosa Rorug02G0503000
rosa_samantha Rh2AG570000 Rh2BG582200 Rh2CG552000 Rh2DG592000
rosa_wichuraiana Rw2G047190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 992
AciI CCGC 2 cut(s) 950, 999
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 4 cut(s) 7, 225, 298, 722
AcuI CTGAAG 2 cut(s) 594, 1062
AcyI GRCGYC 1 cut(s) 993
AfiI CCNNNNNNNGG 3 cut(s) 210, 841, 931
AgsI TTSAA 4 cut(s) 368, 569, 596, 1069
AjiI CACGTC 1 cut(s) 940
AjnI CCWGG 2 cut(s) 829, 924
AjuI GAANNNNNNNTTGG 4 cut(s) 290, 322, 707, 739
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 3 cut(s) 49, 336, 832
ApeKI GCWGC 5 cut(s) 68, 84, 249, 611, 653
ApoI RAATTY 4 cut(s) 7, 225, 298, 722
AspA2I CCTAGG 1 cut(s) 754
AspLEI GCGC 2 cut(s) 961, 995
AspS9I GGNCC 4 cut(s) 337, 352, 711, 985
AsuC2I CCSGG 2 cut(s) 340, 341
AsuHPI GGTGA 4 cut(s) 422, 467, 680, 1124
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 3 cut(s) 352, 711, 985
AvrII CCTAGG 1 cut(s) 754
BaeGI GKGCMC 2 cut(s) 331, 830
BalI TGGCCA 1 cut(s) 51
BanI GGYRCC 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 767
BbvCI CCTCAGC 1 cut(s) 1010
BbvI GCAGC 5 cut(s) 55, 71, 236, 623, 640
BccI CCATC 4 cut(s) 157, 445, 769, 976
BceAI ACGGC 1 cut(s) 72
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 2 cut(s) 831, 926
BcnI CCSGG 2 cut(s) 340, 341
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 104, 755
BfmI CTRYAG 2 cut(s) 250, 727
BfoI RGCGCY 1 cut(s) 996
BisI GCNGC 6 cut(s) 69, 85, 250, 612, 654, 951
BlnI CCTAGG 1 cut(s) 754
BlsI GCNGC 6 cut(s) 70, 86, 251, 613, 655, 952
Bme1390I CCNGG 4 cut(s) 340, 341, 831, 926
Bme18I GGWCC 3 cut(s) 352, 711, 985
BmeT110I CYCGRG 1 cut(s) 339
BmgBI CACGTC 1 cut(s) 940
BmgT120I GGNCC 4 cut(s) 337, 352, 711, 985
BmiI GGNNCC 1 cut(s) 994
BmrFI CCNGG 4 cut(s) 340, 341, 831, 926
BmsI GCATC 7 cut(s) 80, 250, 466, 617, 639, 835, 857
BpiI GAAGAC 1 cut(s) 767
Bpu10I CCTNAGC 2 cut(s) 954, 1010
BpuEI CTTGAG 1 cut(s) 1121
BpuMI CCSGG 2 cut(s) 340, 341
Bsa29I ATCGAT 1 cut(s) 696
BsaHI GRCGYC 1 cut(s) 993
BsaJI CCNNGG 6 cut(s) 339, 340, 754, 795, 829, 988
BsaWI WCCGGW 1 cut(s) 539
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 841, 931
Bse1I ACTGG 2 cut(s) 291, 424
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 831, 926
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 6 cut(s) 339, 340, 754, 795, 829, 988
BseGI GGATG 3 cut(s) 850, 853, 940
BseLI CCNNNNNNNGG 3 cut(s) 210, 841, 931
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 1024
BseNI ACTGG 2 cut(s) 291, 424
BseRI GAGGAG 1 cut(s) 502
BseSI GKGCMC 2 cut(s) 331, 830
BseXI GCAGC 5 cut(s) 55, 71, 236, 623, 640
BshFI GGCC 3 cut(s) 51, 338, 834
BshNI GGYRCC 1 cut(s) 992
BshVI ATCGAT 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 340, 540
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 210, 841, 931
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 3 cut(s) 51, 338, 834
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 331, 830
Bsp143I GATC 3 cut(s) 523, 657, 690
Bsp19I CCATGG 1 cut(s) 988
BspACI CCGC 2 cut(s) 950, 999
BspANI GGCC 3 cut(s) 51, 338, 834
BspCNI CTCAG 1 cut(s) 1023
BspDI ATCGAT 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 994
BspMAI CTGCAG 2 cut(s) 254, 731
BspPI GGATC 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 992
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 2 cut(s) 291, 424
BssECI CCNNGG 6 cut(s) 339, 340, 754, 795, 829, 988
BssMI GATC 3 cut(s) 523, 657, 690
BssNI GRCGYC 1 cut(s) 993
BssT1I CCWWGG 3 cut(s) 754, 795, 988
Bst2UI CCWGG 2 cut(s) 831, 926
Bst4CI ACNGT 2 cut(s) 823, 920
Bst6I CTCTTC 2 cut(s) 211, 408
BstACI GRCGYC 1 cut(s) 993
BstAPI GCANNNNNTGC 2 cut(s) 617, 1160
BstC8I GCNNGC 4 cut(s) 997, 1001, 1142, 1161
BstDEI CTNAG 3 cut(s) 954, 1010, 1145
BstDSI CCRYGG 1 cut(s) 988
BstF5I GGATG 3 cut(s) 850, 853, 940
BstH2I RGCGCY 1 cut(s) 996
BstHHI GCGC 2 cut(s) 961, 995
BstKTI GATC 3 cut(s) 526, 660, 693
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 523, 657, 690
BstMWI GCNNNNNNNGC 5 cut(s) 335, 617, 776, 956, 1160
BstNI CCWGG 2 cut(s) 831, 926
BstNSI RCATGY 2 cut(s) 965, 1144
BstSCI CCNGG 4 cut(s) 338, 339, 829, 924
BstSFI CTRYAG 2 cut(s) 250, 727
BstSLI GKGCMC 2 cut(s) 331, 830
BstV1I GCAGC 5 cut(s) 55, 71, 236, 623, 640
BstV2I GAAGAC 1 cut(s) 767
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 3 cut(s) 51, 338, 834
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 1 cut(s) 988
BtgZI GCGATG 2 cut(s) 489, 995
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 3 cut(s) 850, 853, 940
BtsIMutI CAGTG 2 cut(s) 298, 916
Cac8I GCNNGC 4 cut(s) 997, 1001, 1142, 1161
CfoI GCGC 2 cut(s) 961, 995
Cfr13I GGNCC 4 cut(s) 337, 352, 711, 985
Cfr9I CCCGGG 1 cut(s) 339
ClaI ATCGAT 1 cut(s) 696
CseI GACGC 1 cut(s) 24
CviAII CATG 8 cut(s) 113, 391, 494, 530, 962, 989, 1076, 1141
DdeI CTNAG 3 cut(s) 954, 1010, 1145
DinI GGCGCC 1 cut(s) 994
DpnI GATC 3 cut(s) 525, 659, 692
DpnII GATC 3 cut(s) 523, 657, 690
DraI TTTAAA 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 211, 408
EarI CTCTTC 2 cut(s) 211, 408
Eco130I CCWWGG 3 cut(s) 754, 795, 988
Eco47I GGWCC 3 cut(s) 352, 711, 985
Eco57I CTGAAG 2 cut(s) 594, 1062
Eco88I CYCGRG 1 cut(s) 339
EcoRI GAATTC 2 cut(s) 298, 722
EcoRII CCWGG 2 cut(s) 829, 924
EcoT14I CCWWGG 3 cut(s) 754, 795, 988
EcoT22I ATGCAT 3 cut(s) 244, 632, 850
EgeI GGCGCC 1 cut(s) 994
EheI GGCGCC 1 cut(s) 994
ErhI CCWWGG 3 cut(s) 754, 795, 988
FaeI CATG 8 cut(s) 116, 394, 497, 533, 965, 992, 1079, 1144
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 170
FatI CATG 8 cut(s) 112, 390, 493, 529, 961, 988, 1075, 1140
FauI CCCGC 1 cut(s) 992
FauNDI CATATG 1 cut(s) 616
Fnu4HI GCNGC 6 cut(s) 69, 85, 250, 612, 654, 951
FokI GGATG 3 cut(s) 840, 857, 947
Fsp4HI GCNGC 6 cut(s) 69, 85, 250, 612, 654, 951
FspBI CTAG 2 cut(s) 104, 755
GlaI GCGC 2 cut(s) 960, 994
GluI GCNGC 6 cut(s) 69, 85, 250, 612, 654, 951
HaeII RGCGCY 1 cut(s) 996
HaeIII GGCC 3 cut(s) 51, 338, 834
HapII CCGG 2 cut(s) 340, 540
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 961, 995
Hin1I GRCGYC 1 cut(s) 993
Hin1II CATG 8 cut(s) 116, 394, 497, 533, 965, 992, 1079, 1144
Hin6I GCGC 2 cut(s) 959, 993
HinP1I GCGC 2 cut(s) 959, 993
HindIII AAGCTT 3 cut(s) 597, 740, 1157
HinfI GANTC 2 cut(s) 43, 1072
HpaII CCGG 2 cut(s) 340, 540
HphI GGTGA 4 cut(s) 422, 467, 680, 1124
Hpy166II GTNNAC 1 cut(s) 973
Hpy188I TCNGA 2 cut(s) 356, 550
Hpy188III TCNNGA 4 cut(s) 12, 566, 661, 1089
Hpy8I GTNNAC 1 cut(s) 973
HpyAV CCTTC 4 cut(s) 569, 940, 1015, 1088
HpyCH4III ACNGT 2 cut(s) 823, 920
HpyCH4IV ACGT 1 cut(s) 939
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 617, 776, 956, 1160
HpyF3I CTNAG 3 cut(s) 954, 1010, 1145
HpySE526I ACGT 1 cut(s) 939
Hsp92I GRCGYC 1 cut(s) 993
Hsp92II CATG 8 cut(s) 116, 394, 497, 533, 965, 992, 1079, 1144
HspAI GCGC 2 cut(s) 959, 993
KasI GGCGCC 1 cut(s) 992
Kzo9I GATC 3 cut(s) 523, 657, 690
LmnI GCTCC 1 cut(s) 1175
Lsp1109I GCAGC 5 cut(s) 55, 71, 236, 623, 640
LweI GCATC 7 cut(s) 80, 250, 466, 617, 639, 835, 857
MaeI CTAG 2 cut(s) 104, 755
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 4 cut(s) 286, 358, 817, 1027
MalI GATC 3 cut(s) 525, 659, 692
MboI GATC 3 cut(s) 523, 657, 690
MhlI GDGCHC 2 cut(s) 331, 830
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 7 cut(s) 7, 225, 298, 498, 591, 722, 1130
MluNI TGGCCA 1 cut(s) 51
Mly113I GGCGCC 1 cut(s) 993
MmeI TCCRAC 2 cut(s) 408, 764
Mox20I TGGCCA 1 cut(s) 51
Mph1103I ATGCAT 3 cut(s) 244, 632, 850
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 63, 891
MslI CAYNNNNRTG 1 cut(s) 858
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 249, 999
MspI CCGG 2 cut(s) 340, 540
MspR9I CCNGG 4 cut(s) 340, 341, 831, 926
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 2 cut(s) 831, 926
MwoI GCNNNNNNNGC 5 cut(s) 335, 617, 776, 956, 1160
NarI GGCGCC 1 cut(s) 993
NciI CCSGG 2 cut(s) 340, 341
NcoI CCATGG 1 cut(s) 988
NdeI CATATG 1 cut(s) 616
NdeII GATC 3 cut(s) 523, 657, 690
NlaIII CATG 8 cut(s) 116, 394, 497, 533, 965, 992, 1079, 1144
NlaIV GGNNCC 1 cut(s) 994
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 3 cut(s) 244, 632, 850
NspI RCATGY 2 cut(s) 965, 1144
PaeI GCATGC 1 cut(s) 1144
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 43, 1072
PkrI GCNGC 6 cut(s) 70, 86, 251, 613, 655, 952
PluTI GGCGCC 1 cut(s) 996
Psp6I CCWGG 2 cut(s) 829, 924
PspGI CCWGG 2 cut(s) 829, 924
PspN4I GGNNCC 1 cut(s) 994
PspPI GGNCC 4 cut(s) 337, 352, 711, 985
PstI CTGCAG 2 cut(s) 254, 731
PvuII CAGCTG 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 858
SaqAI TTAA 2 cut(s) 63, 891
SatI GCNGC 6 cut(s) 69, 85, 250, 612, 654, 951
Sau3AI GATC 3 cut(s) 523, 657, 690
Sau96I GGNCC 4 cut(s) 337, 352, 711, 985
ScrFI CCNGG 4 cut(s) 340, 341, 831, 926
SduI GDGCHC 2 cut(s) 331, 830
SfaNI GCATC 7 cut(s) 80, 250, 466, 617, 639, 835, 857
SfcI CTRYAG 2 cut(s) 250, 727
SfoI GGCGCC 1 cut(s) 994
SinI GGWCC 3 cut(s) 352, 711, 985
SmaI CCCGGG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 858
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
SphI GCATGC 1 cut(s) 1144
Sse9I AATT 7 cut(s) 7, 225, 298, 498, 591, 722, 1130
SsiI CCGC 2 cut(s) 950, 999
SspDI GGCGCC 1 cut(s) 992
SspMI CTAG 2 cut(s) 104, 755
StyD4I CCNGG 4 cut(s) 338, 339, 829, 924
StyI CCWWGG 3 cut(s) 754, 795, 988
TaaI ACNGT 2 cut(s) 823, 920
TaiI ACGT 1 cut(s) 942
TaqI TCGA 2 cut(s) 80, 696
TasI AATT 7 cut(s) 7, 225, 298, 498, 591, 722, 1130
TauI GCSGC 1 cut(s) 953
TfiI GAWTC 2 cut(s) 43, 1072
Tru1I TTAA 2 cut(s) 63, 891
Tru9I TTAA 2 cut(s) 63, 891
TscAI CASTG 2 cut(s) 298, 923
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 5 cut(s) 68, 84, 249, 611, 653
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 6 cut(s) 17, 387, 407, 818, 1064, 1140
TspMI CCCGGG 1 cut(s) 339
TspRI CASTG 2 cut(s) 298, 923
VpaK11BI GGWCC 3 cut(s) 352, 711, 985
XapI RAATTY 4 cut(s) 7, 225, 298, 722
XceI RCATGY 2 cut(s) 965, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmaI CCCGGG 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 754
XspI CTAG 2 cut(s) 104, 755
Zsp2I ATGCAT 3 cut(s) 244, 632, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.