Prupe.3G241700_v2.0.a1

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016903
Physical Location & Seq
Reverse (-)
23499209 .. 23501379
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G241700.1

Sequence Viewer

Length: 1029 bp
ATGAGAAAGATGGCAATGGAAGAATTCGCAGTTCTAAAACCTCAAGTGCGTTGTTTAAGGGAGGAGGAGCAGAAGGTTTGTGTGAACAATGCCTTCAGCTGCGGTTTGGATGCAAGAGAGAGGAAGCTGGTTTGTGTGACCGGTGGGAATTCTAACTTGGGTTCTCACATAGTTAAGGCTCTATTGGCACGTAGTTACTTGGTCCGAGTCACAATTCAAAACCAAGGGGATTATGAAGACATGAAGAAGCTAATGAGAGATGAAGAGATAAACCAACTCGAGGGCGTTGTTGTGGCGAAGATGGGTAGTCTGGACAGTCTCTGTGAGGCTTTTAGAGGTTGTCATGCAATTTTTCATACCTCCTCCTTCATTGATCCACACGGTATCTCCGGTTATTCGGAACATATGGCATTTCTCGAGGCTGAAGCGGCAAGGAATGTTATTGAAGCTTGTGGCAGGGCAGCATATGCAAAGAGATGTATCTTCACTTCCTCTCTTCTTGCTGCCATTTGGACTGGTGACAATGAAAACAAGATCATTGATGAGTTTAGCTGGACCAATGAGGAATTCTGCAGAGAAAACAAGCTTTGGCTAGCCTTAGGAAAGACCACTGCAGAGATGACTTGTTGGAGGAAGTCCAAGGAAATGAAAGTGAATCTTGTTACAGTCTGCCCCGGCCTTCTCATGGATGCATCTTTTCCAAATGCTCACAACTATGTACCATATCTTAAAGGCGGCAAGGTCATGCTCGAACACGGTCACCTAGCCATTGAGGATGCGAGGAAGGCGGCAAAAGCACATGTCTATGTTTATGAAGCCATGGACTATGGAGCCTGTGGGAGATACCTCTGCTATGGGAAGGTTGTAAGAAAAATGAGCGAAGCTATTGAACTAGAAAATGGATTGAAGATTCATGGTTTGTTATCAGGAGGAAGACATGAGGCCTTAGATGAAGAAATACATATCATGCTTAGTAATGCAAAGCTTGTTCGATTGATTCAAGGTTCTCAAAAGTTGTCTTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD NAD_binding_10

Protein Analysis

343

Amino Acids

38.29

Weight (kDa)

7.53

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016903)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45521
malus_domestica MD09G1082100.v1.1
prunus_persica Prupe.3G241700_v2.0.a1
pyrus_communis pycom09g00860
rosa_chinensis RchiOBHm_Chr2g0163471
rosa_laevigata RLG00000021404
rosa_multiflora Rmu_co8460151.1_g000001
rosa_roxburghii Rroxscaffold_2G00087290
rosa_rugosa Rorug02G0503000
rosa_samantha Rh2AG570000 Rh2BG582200 Rh2CG552000 Rh2DG592000
rosa_wichuraiana Rw2G047190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 102, 428, 735, 788
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 3 cut(s) 23, 148, 566
AcuI CTGAAG 2 cut(s) 79, 444
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 2 cut(s) 280, 685
AflIII ACRYGT 1 cut(s) 799
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 5 cut(s) 218, 446, 890, 907, 1001
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 551, 583
AluBI AGCT 8 cut(s) 99, 127, 250, 449, 552, 586, 884, 985
AluI AGCT 8 cut(s) 99, 127, 250, 449, 552, 586, 884, 985
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 321
Ama87I CYCGRG 2 cut(s) 278, 416
AoxI GGCC 2 cut(s) 676, 942
ApeKI GCWGC 3 cut(s) 99, 461, 503
ApoI RAATTY 3 cut(s) 23, 148, 566
AsiGI ACCGGT 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 202, 555
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 530, 752
AsuNHI GCTAGC 1 cut(s) 592
AvaI CYCGRG 2 cut(s) 278, 416
AvaII GGWCC 2 cut(s) 202, 555
AxyI CCTNAGG 1 cut(s) 598
BarI GAAGNNNNNNTAC 2 cut(s) 472, 504
BbsI GAAGAC 2 cut(s) 243, 940
BbvI GCAGC 3 cut(s) 86, 473, 490
BccI CCATC 2 cut(s) 4, 295
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 3 cut(s) 593, 764, 893
BfmI CTRYAG 2 cut(s) 571, 612
BisI GCNGC 6 cut(s) 100, 429, 462, 504, 736, 789
BlsI GCNGC 6 cut(s) 101, 430, 463, 505, 737, 790
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 2 cut(s) 202, 555
BmeT110I CYCGRG 2 cut(s) 278, 416
BmgT120I GGNCC 2 cut(s) 202, 555
BmiI GGNNCC 1 cut(s) 832
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 4 cut(s) 100, 679, 701, 766
BmtI GCTAGC 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 243, 940
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 675
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 223, 639, 673, 819
BsaWI WCCGGW 2 cut(s) 140, 389
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 685
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 21
BseDI CCNNGG 4 cut(s) 223, 639, 673, 819
BseGI GGATG 3 cut(s) 115, 694, 781
BseLI CCNNNNNNNGG 2 cut(s) 280, 685
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 3 cut(s) 77, 80, 352
BseXI GCAGC 3 cut(s) 86, 473, 490
BshFI GGCC 2 cut(s) 678, 944
BshTI ACCGGT 1 cut(s) 140
BsiHKCI CYCGRG 2 cut(s) 278, 416
BsiSI CCGG 3 cut(s) 141, 390, 675
BslI CCNNNNNNNGG 2 cut(s) 280, 685
BsmAI GTCTC 1 cut(s) 323
BsnI GGCC 2 cut(s) 678, 944
BsoBI CYCGRG 2 cut(s) 278, 416
Bsp143I GATC 2 cut(s) 373, 534
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 4 cut(s) 102, 428, 735, 788
BspANI GGCC 2 cut(s) 678, 944
BspLI GGNNCC 1 cut(s) 832
BspMAI CTGCAG 2 cut(s) 575, 616
BspOI GCTAGC 1 cut(s) 596
BspPI GGATC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 223, 639, 673, 819
BssMI GATC 2 cut(s) 373, 534
BssT1I CCWWGG 3 cut(s) 223, 639, 819
Bst4CI ACNGT 4 cut(s) 317, 383, 667, 758
Bst6I CTCTTC 2 cut(s) 258, 501
BstAPI GCANNNNNTGC 1 cut(s) 467
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 598, 946, 971
BstDSI CCRYGG 1 cut(s) 819
BstEII GGTNACC 1 cut(s) 758
BstF5I GGATG 3 cut(s) 115, 694, 781
BstKTI GATC 2 cut(s) 376, 537
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 373, 534
BstMWI GCNNNNNNNGC 5 cut(s) 185, 428, 467, 785, 794
BstNSI RCATGY 1 cut(s) 803
BstPI GGTNACC 1 cut(s) 758
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 2 cut(s) 571, 612
BstV1I GCAGC 3 cut(s) 86, 473, 490
BstV2I GAAGAC 2 cut(s) 243, 940
Bsu36I CCTNAGG 1 cut(s) 598
BsuRI GGCC 2 cut(s) 678, 944
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 3 cut(s) 115, 694, 781
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 609
Cac8I GCNNGC 1 cut(s) 594
CaiI CAGNNNCTG 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 202, 555
Csp6I GTAC 1 cut(s) 719
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 9 cut(s) 241, 344, 685, 745, 800, 820, 914, 938, 967
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 3 cut(s) 598, 946, 971
DpnI GATC 2 cut(s) 375, 536
DpnII GATC 2 cut(s) 373, 534
Eam1104I CTCTTC 2 cut(s) 258, 501
EarI CTCTTC 2 cut(s) 258, 501
Eco130I CCWWGG 3 cut(s) 223, 639, 819
Eco147I AGGCCT 1 cut(s) 944
Eco47I GGWCC 2 cut(s) 202, 555
Eco57I CTGAAG 2 cut(s) 79, 444
Eco81I CCTNAGG 1 cut(s) 598
Eco88I CYCGRG 2 cut(s) 278, 416
Eco91I GGTNACC 1 cut(s) 758
EcoO65I GGTNACC 1 cut(s) 758
EcoRI GAATTC 3 cut(s) 23, 148, 566
EcoT14I CCWWGG 3 cut(s) 223, 639, 819
EcoT22I ATGCAT 1 cut(s) 694
ErhI CCWWGG 3 cut(s) 223, 639, 819
FaeI CATG 9 cut(s) 244, 347, 688, 748, 803, 823, 917, 941, 970
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 9 cut(s) 240, 343, 684, 744, 799, 819, 913, 937, 966
FauNDI CATATG 2 cut(s) 405, 466
Fnu4HI GCNGC 6 cut(s) 100, 429, 462, 504, 736, 789
FokI GGATG 3 cut(s) 122, 701, 788
Fsp4HI GCNGC 6 cut(s) 100, 429, 462, 504, 736, 789
FspBI CTAG 3 cut(s) 593, 764, 893
GluI GCNGC 6 cut(s) 100, 429, 462, 504, 736, 789
HaeIII GGCC 2 cut(s) 678, 944
HapII CCGG 3 cut(s) 141, 390, 675
Hin1II CATG 9 cut(s) 244, 347, 688, 748, 803, 823, 917, 941, 970
HindIII AAGCTT 3 cut(s) 447, 584, 983
HinfI GANTC 4 cut(s) 207, 655, 910, 997
HpaII CCGG 3 cut(s) 141, 390, 675
HphI GGTGA 2 cut(s) 530, 752
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 206, 400
Hpy188III TCNNGA 3 cut(s) 311, 416, 927
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 6 cut(s) 67, 103, 376, 689, 778, 853
HpyCH4III ACNGT 4 cut(s) 317, 383, 667, 758
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 8 cut(s) 113, 347, 470, 573, 614, 692, 980, 1023
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 428, 467, 785, 794
HpyF3I CTNAG 3 cut(s) 598, 946, 971
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 9 cut(s) 244, 347, 688, 748, 803, 823, 917, 941, 970
Kzo9I GATC 2 cut(s) 373, 534
LmnI GCTCC 2 cut(s) 67, 830
Lsp1109I GCAGC 3 cut(s) 86, 473, 490
LweI GCATC 4 cut(s) 100, 679, 701, 766
MaeI CTAG 3 cut(s) 593, 764, 893
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 6 cut(s) 136, 194, 208, 518, 661, 758
MalI GATC 2 cut(s) 375, 536
MboI GATC 2 cut(s) 373, 534
MluCI AATT 5 cut(s) 23, 148, 213, 348, 566
MlyI GAGTC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 3 cut(s) 56, 174, 729
MslI CAYNNNNRTG 2 cut(s) 714, 804
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 3 cut(s) 141, 390, 675
MspR9I CCNGG 1 cut(s) 675
MwoI GCNNNNNNNGC 5 cut(s) 185, 428, 467, 785, 794
NciI CCSGG 1 cut(s) 675
NcoI CCATGG 1 cut(s) 819
NdeI CATATG 2 cut(s) 405, 466
NdeII GATC 2 cut(s) 373, 534
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 9 cut(s) 244, 347, 688, 748, 803, 823, 917, 941, 970
NlaIV GGNNCC 1 cut(s) 832
NmuCI GTSAC 4 cut(s) 136, 208, 518, 758
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 803
PaeR7I CTCGAG 2 cut(s) 278, 416
PceI AGGCCT 1 cut(s) 944
PciI ACATGT 1 cut(s) 799
PfeI GAWTC 3 cut(s) 655, 910, 997
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 6 cut(s) 101, 430, 463, 505, 737, 790
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Ppu21I YACGTR 1 cut(s) 191
PscI ACATGT 1 cut(s) 799
PspEI GGTNACC 1 cut(s) 758
PspN4I GGNNCC 1 cut(s) 832
PspPI GGNCC 2 cut(s) 202, 555
PspXI VCTCGAGB 1 cut(s) 278
PstI CTGCAG 2 cut(s) 575, 616
PstNI CAGNNNCTG 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 99
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
RseI CAYNNNNRTG 2 cut(s) 714, 804
SaqAI TTAA 3 cut(s) 56, 174, 729
SatI GCNGC 6 cut(s) 100, 429, 462, 504, 736, 789
Sau3AI GATC 2 cut(s) 373, 534
Sau96I GGNCC 2 cut(s) 202, 555
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 4 cut(s) 100, 679, 701, 766
SfcI CTRYAG 2 cut(s) 571, 612
Sfr274I CTCGAG 2 cut(s) 278, 416
SinI GGWCC 2 cut(s) 202, 555
SlaI CTCGAG 2 cut(s) 278, 416
SmiMI CAYNNNNRTG 2 cut(s) 714, 804
SmlI CTYRAG 3 cut(s) 42, 278, 416
SmoI CTYRAG 3 cut(s) 42, 278, 416
Sse9I AATT 5 cut(s) 23, 148, 213, 348, 566
SseBI AGGCCT 1 cut(s) 944
SsiI CCGC 4 cut(s) 102, 428, 735, 788
SspMI CTAG 3 cut(s) 593, 764, 893
StuI AGGCCT 1 cut(s) 944
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 3 cut(s) 223, 639, 819
TaaI ACNGT 4 cut(s) 317, 383, 667, 758
TaiI ACGT 1 cut(s) 193
TaqI TCGA 4 cut(s) 279, 417, 750, 991
TasI AATT 5 cut(s) 23, 148, 213, 348, 566
TauI GCSGC 3 cut(s) 431, 738, 791
TfiI GAWTC 3 cut(s) 655, 910, 997
Tru1I TTAA 3 cut(s) 56, 174, 729
Tru9I TTAA 3 cut(s) 56, 174, 729
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 4 cut(s) 136, 208, 518, 758
TseI GCWGC 3 cut(s) 99, 461, 503
Tsp45I GTSAC 4 cut(s) 136, 208, 518, 758
TspRI CASTG 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 202, 555
XapI RAATTY 3 cut(s) 23, 148, 566
XceI RCATGY 1 cut(s) 803
XhoI CTCGAG 2 cut(s) 278, 416
XspI CTAG 3 cut(s) 593, 764, 893
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.