Rmu_co8460151.1_g000001

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8460151.1
OG0016903
Physical Location & Seq
Forward (+)
41 .. 1762
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8460151.1_g000001.1.cds

Sequence Viewer

Length: 888 bp
atggaagaagtggtggtgccaaagccattgatgatctctttagaggaagaacacaaaaactgcttaaactacgcattcaggtgcagttgggatatttcaagagagaagaatctggtttgtgtgaccagtgggaattcttacctgggttctcacatagttagggctcttttggctcgcggatatcggattcgagtcaccattcaaaaccaagaggattatgaagacatgaagaagctaatgagagatgaagagataaaccaactagaaagtgttgttgtggcaaagatgggaaacttggataggctttgtgatgcttttaggggctgccatgcaatttttcatacttcttccttcattgatccacatggtgtctctggttattctggacaaatggcatttcttgaaactgaaggggcaaagaatgtgatcgaagcttgtggcagggcagcgcatgcaaagagatgcatcttcacttcctctcttcttgcttctatttggacaggtgatagtgaaaacaagatcattgatgagtttagctggagcaatgaagaattctgcagggaaaacaagctttggctggccttggggaagaccactgcagagatggcttgttggagaaagtcaaaggaaatgaaagtcaatcttgtgacagtttgccccggccttctcatggactcatatgctcacaaggacagctctataccctatcttaaaggtggcaaggacatgctaaaaaatggtcacctagccattgaggatgtgaagaaggctgcagaggcgcacgtctatgtatatgaggccatggatagtggagcatgtgggagatacctgtgctttgggaaggaggaagccttgaagtttttgacgaagaagcaggtgcagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
3Beta_HSD NAD_binding_10

Protein Analysis

295

Amino Acids

33.3

Weight (kDa)

6.75

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016903)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45521
malus_domestica MD09G1082100.v1.1
prunus_persica Prupe.3G241700_v2.0.a1
pyrus_communis pycom09g00860
rosa_chinensis RchiOBHm_Chr2g0163471
rosa_laevigata RLG00000021404
rosa_multiflora Rmu_co8460151.1_g000001
rosa_roxburghii Rroxscaffold_2G00087290
rosa_rugosa Rorug02G0503000
rosa_samantha Rh2AG570000 Rh2BG582200 Rh2CG552000 Rh2DG592000
rosa_wichuraiana Rw2G047190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 16
AccII CGCG 1 cut(s) 177
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 133, 551
AcuI CTGAAG 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 4 cut(s) 99, 203, 404, 856
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 5 cut(s) 235, 434, 537, 571, 696
AluI AGCT 5 cut(s) 235, 434, 537, 571, 696
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 353
AoxI GGCC 3 cut(s) 579, 661, 798
ApeKI GCWGC 3 cut(s) 324, 446, 770
ApoI RAATTY 2 cut(s) 133, 551
AspLEI GCGC 2 cut(s) 451, 781
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 3 cut(s) 187, 515, 734
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 228, 596
BbvI GCAGC 3 cut(s) 311, 458, 757
BccI CCATC 2 cut(s) 280, 598
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 2 cut(s) 263, 746
BfmI CTRYAG 3 cut(s) 556, 597, 771
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 3 cut(s) 325, 447, 771
BlsI GCNGC 3 cut(s) 326, 448, 772
Bme1390I CCNGG 2 cut(s) 143, 660
BmgBI CACGTC 1 cut(s) 784
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 143, 660
BmsI GCATC 3 cut(s) 301, 452, 474
BpiI GAAGAC 2 cut(s) 228, 596
BpmI CTGGAG 1 cut(s) 559
BpuMI CCSGG 1 cut(s) 660
BsaJI CCNNGG 4 cut(s) 142, 582, 658, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 550
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 4 cut(s) 142, 582, 658, 801
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 550
BseNI ACTGG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 311, 458, 757
BsgI GTGCAG 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 581, 663, 800
BshNI GGYRCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 660
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 581, 663, 800
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 4 cut(s) 33, 358, 426, 519
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 1 cut(s) 177
BspANI GGCC 3 cut(s) 581, 663, 800
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 3 cut(s) 560, 601, 775
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 550
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 4 cut(s) 142, 582, 658, 801
BssMI GATC 4 cut(s) 33, 358, 426, 519
BssT1I CCWWGG 2 cut(s) 582, 801
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 2 cut(s) 243, 486
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 3 cut(s) 175, 453, 579
BstDSI CCRYGG 1 cut(s) 801
BstEII GGTNACC 1 cut(s) 740
BstF5I GGATG 1 cut(s) 763
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 2 cut(s) 451, 781
BstKTI GATC 4 cut(s) 36, 361, 429, 522
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 33, 358, 426, 519
BstMWI GCNNNNNNNGC 4 cut(s) 170, 452, 605, 776
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 3 cut(s) 455, 730, 819
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 141, 658
BstSFI CTRYAG 3 cut(s) 556, 597, 771
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 311, 458, 757
BstV2I GAAGAC 2 cut(s) 228, 596
BsuRI GGCC 3 cut(s) 581, 663, 800
BtgI CCRYGG 1 cut(s) 801
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 1 cut(s) 763
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 133, 594
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 175, 453, 579
CfoI GCGC 2 cut(s) 451, 781
CviAII CATG 8 cut(s) 226, 329, 365, 452, 670, 727, 802, 816
DpnI GATC 4 cut(s) 35, 360, 428, 521
DpnII GATC 4 cut(s) 33, 358, 426, 519
DraIII CACNNNGTG 1 cut(s) 368
Eam1104I CTCTTC 2 cut(s) 243, 486
EarI CTCTTC 2 cut(s) 243, 486
Eco130I CCWWGG 2 cut(s) 582, 801
Eco24I GRGCYC 1 cut(s) 166
Eco32I GATATC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 429
Eco91I GGTNACC 1 cut(s) 740
EcoO65I GGTNACC 1 cut(s) 740
EcoRI GAATTC 2 cut(s) 133, 551
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 182
EcoT14I CCWWGG 2 cut(s) 582, 801
EcoT22I ATGCAT 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 582, 801
FaeI CATG 8 cut(s) 229, 332, 368, 455, 673, 730, 805, 819
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FatI CATG 8 cut(s) 225, 328, 364, 451, 669, 726, 801, 815
FauNDI CATATG 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 325, 447, 771
FokI GGATG 1 cut(s) 770
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 325, 447, 771
FspBI CTAG 2 cut(s) 263, 746
GlaI GCGC 2 cut(s) 450, 780
GluI GCNGC 3 cut(s) 325, 447, 771
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 3 cut(s) 581, 663, 800
HapII CCGG 1 cut(s) 660
HhaI GCGC 2 cut(s) 451, 781
Hin1II CATG 8 cut(s) 229, 332, 368, 455, 673, 730, 805, 819
Hin6I GCGC 2 cut(s) 449, 779
HinP1I GCGC 2 cut(s) 449, 779
HindIII AAGCTT 2 cut(s) 432, 569
HinfI GANTC 4 cut(s) 109, 187, 192, 674
HpaII CCGG 1 cut(s) 660
HphI GGTGA 3 cut(s) 187, 515, 734
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 3 cut(s) 99, 384, 401
HpyAV CCTTC 5 cut(s) 361, 404, 674, 760, 835
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 8 cut(s) 84, 332, 455, 465, 558, 599, 773, 880
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 452, 605, 776
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 8 cut(s) 229, 332, 368, 455, 673, 730, 805, 819
HspAI GCGC 2 cut(s) 449, 779
Kzo9I GATC 4 cut(s) 33, 358, 426, 519
LmnI GCTCC 2 cut(s) 540, 812
Lsp1109I GCAGC 3 cut(s) 311, 458, 757
LweI GCATC 3 cut(s) 301, 452, 474
MaeI CTAG 2 cut(s) 263, 746
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 4 cut(s) 121, 193, 646, 740
MalI GATC 4 cut(s) 35, 360, 428, 521
MboI GATC 4 cut(s) 33, 358, 426, 519
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 3 cut(s) 133, 333, 551
MlyI GAGTC 2 cut(s) 201, 668
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 7 cut(s) 37, 205, 487, 748, 769, 790, 838
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 2 cut(s) 65, 711
MslI CAYNNNNRTG 2 cut(s) 79, 786
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 2 cut(s) 143, 660
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 170, 452, 605, 776
NciI CCSGG 1 cut(s) 660
NcoI CCATGG 1 cut(s) 801
NdeI CATATG 1 cut(s) 679
NdeII GATC 4 cut(s) 33, 358, 426, 519
NlaIII CATG 8 cut(s) 229, 332, 368, 455, 673, 730, 805, 819
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 4 cut(s) 121, 193, 646, 740
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 3 cut(s) 455, 730, 819
PaeI GCATGC 1 cut(s) 455
PaqCI CACCTGC 1 cut(s) 865
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 109, 187
PkrI GCNGC 3 cut(s) 326, 448, 772
PleI GAGTC 2 cut(s) 200, 668
PpsI GAGTC 2 cut(s) 200, 668
Psp6I CCWGG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 740
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 3 cut(s) 560, 601, 775
RseI CAYNNNNRTG 2 cut(s) 79, 786
SaqAI TTAA 2 cut(s) 65, 711
SatI GCNGC 3 cut(s) 325, 447, 771
Sau3AI GATC 4 cut(s) 33, 358, 426, 519
SchI GAGTC 2 cut(s) 201, 668
ScrFI CCNGG 2 cut(s) 143, 660
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 3 cut(s) 301, 452, 474
SfcI CTRYAG 3 cut(s) 556, 597, 771
SmiMI CAYNNNNRTG 2 cut(s) 79, 786
SphI GCATGC 1 cut(s) 455
Sse9I AATT 3 cut(s) 133, 333, 551
SsiI CCGC 1 cut(s) 177
SspMI CTAG 2 cut(s) 263, 746
StyD4I CCNGG 2 cut(s) 141, 658
StyI CCWWGG 2 cut(s) 582, 801
TaaI ACNGT 1 cut(s) 652
TaiI ACGT 1 cut(s) 786
TaqI TCGA 2 cut(s) 190, 429
TasI AATT 3 cut(s) 133, 333, 551
TfiI GAWTC 2 cut(s) 109, 187
Tru1I TTAA 2 cut(s) 65, 711
Tru9I TTAA 2 cut(s) 65, 711
TscAI CASTG 2 cut(s) 133, 601
TseFI GTSAC 4 cut(s) 121, 193, 646, 740
TseI GCWGC 3 cut(s) 324, 446, 770
Tsp45I GTSAC 4 cut(s) 121, 193, 646, 740
TspDTI ATGAA 7 cut(s) 234, 242, 261, 329, 343, 561, 647
TspRI CASTG 2 cut(s) 133, 601
XapI RAATTY 2 cut(s) 133, 551
XceI RCATGY 3 cut(s) 455, 730, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XspI CTAG 2 cut(s) 263, 746
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.