Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009705

Physical Location & Seq

Genomic Coordinates Reverse (-)

34956283 .. 34957042

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCATCGCCAGTGACTATTGGAAAGTGGTGGCCGACGCTCTCTGTGACGTACGTGTCGACCCTCATTTTCAGGACGTTGCTGAACCAGAACTGTGCAGCACTACCAAGTTCTTGATCGATTTCCAGGCGGTGATCAGACGCGTCACCTCCTGTGATGCCGACCGACTCTCAGACTTGGACGACGTCATCAGCCGCACAAGTGTGACTAAGGCCTCAATCGAACTCGAATCCTCTGATGCACACGAAGCAGCTGTCGTCTCCGGCGTCCTCCGAGAGCTGAAGGTACCTCTGAGTGAACGTGCTCACATGGTGGAGAGAATAATGAACAAAGCCTGCGATGTAGAAAATGAGAATTGGAGTGGTGGAAGGAAAAAGATTGTTCATATGTTGGTGAATATCGATCTTGTTGTCGTTGATGATGATGATGATAGAGATGAGGATGGTATTGTAGTGTGTTGCCTTGAAGGATCACATCCTTACTCGGATCGTTCCATGGTAGAGCAGCTGCGGAAAACTGGAGTTTGCCCTATGTGTGATGATGATAGGAAAGTGCTCGTGACAAAGATGGATAAGGAGGGGATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.9

Weight (kDa)

4.62

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45570
rosa_chinensis	RchiOBHm_Chr4g0412611
rosa_laevigata	RLG00000008273 RLG00000021407
rosa_multiflora	Rmu_sc0002136.1_g000001 Rmu_sc0016141.1_g000010 Rmu_sc0032469.1_g000005 Rmu_ssc0000381.1_g000035
rosa_roxburghii	Rroxscaffold_5G00356730 Rroxscaffold_5G00356790 Rroxscaffold_7G00189160
rosa_rugosa	Rorug04G0102800
rosa_samantha	Rh4BG173600 Rh4BG173700 Rh4CG184600 Rh4CG185100 Rh4CG185200 Rh4DG169000 Rh4DG169100 Rh4DG169900 Rh4DG170400 Rh6AG165500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	1 cut(s)	189
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	131, 196, 511
AclWI	GGATC	2 cut(s)	478, 495
AcoI	YGGCCR	2 cut(s)	3, 33
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	186, 267
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	54, 288
AflIII	ACRYGT	2 cut(s)	55, 142
AgsI	TTSAA	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	126
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	3 cut(s)	254, 280, 508
AluI	AGCT	3 cut(s)	254, 280, 508
Alw21I	GWGCWC	2 cut(s)	307, 558
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	2 cut(s)	478, 495
AoxI	GGCC	3 cut(s)	3, 33, 213
ApeKI	GCWGC	4 cut(s)	99, 251, 505, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
Asp718I	GGTACC	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	139, 145, 406
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	307, 558
BbvI	GCAGC	4 cut(s)	111, 263, 495, 517
BccI	CCATC	3 cut(s)	14, 437, 562
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	265
BfmI	CTRYAG	1 cut(s)	587
BisI	GCNGC	5 cut(s)	100, 196, 252, 506, 509
BlsI	GCNGC	5 cut(s)	101, 197, 253, 507, 510
Bme1390I	CCNGG	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	148, 229
BpmI	CTGGAG	1 cut(s)	540
Bsa29I	ATCGAT	2 cut(s)	120, 402
BsaAI	YACGTR	1 cut(s)	56
BsaHI	GRCGYC	2 cut(s)	186, 267
BsaJI	CCNNGG	1 cut(s)	495
Bse1I	ACTGG	2 cut(s)	12, 523
BseBI	CCWGG	1 cut(s)	128
BseCI	ATCGAT	2 cut(s)	120, 402
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	448, 475
BseMII	CTCAG	2 cut(s)	186, 284
BseNI	ACTGG	2 cut(s)	12, 523
BseXI	GCAGC	4 cut(s)	111, 263, 495, 517
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	5, 35, 215
BshNI	GGYRCC	1 cut(s)	286
BshVI	ATCGAT	2 cut(s)	120, 402
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	2 cut(s)	307, 558
BsiSI	CCGG	1 cut(s)	264
BsiWI	CGTACG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	265
BsmBI	CGTCTC	1 cut(s)	265
BsnI	GGCC	3 cut(s)	5, 35, 215
Bsp1286I	GDGCHC	2 cut(s)	307, 558
Bsp143I	GATC	5 cut(s)	117, 135, 403, 470, 487
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	3 cut(s)	131, 196, 511
BspANI	GGCC	3 cut(s)	5, 35, 215
BspCNI	CTCAG	2 cut(s)	185, 285
BspDI	ATCGAT	2 cut(s)	120, 402
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	478, 495
BspT107I	GGYRCC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	12, 523
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	5 cut(s)	117, 135, 403, 470, 487
BssNI	GRCGYC	2 cut(s)	186, 267
BssSI	CACGAG	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	96
BstACI	GRCGYC	2 cut(s)	186, 267
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	172, 210, 293
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	448, 475
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	5 cut(s)	120, 138, 406, 473, 490
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	5 cut(s)	117, 135, 403, 470, 487
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	587
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	111, 263, 495, 517
Bsu15I	ATCGAT	2 cut(s)	120, 402
BsuRI	GGCC	3 cut(s)	5, 35, 215
BsuTUI	ATCGAT	2 cut(s)	120, 402
BtgI	CCRYGG	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	448, 475
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	337
ClaI	ATCGAT	2 cut(s)	120, 402
CseI	GACGC	4 cut(s)	47, 133, 150, 256
Csp6I	GTAC	2 cut(s)	53, 287
CviAII	CATG	2 cut(s)	310, 496
CviJI	RGCY	8 cut(s)	5, 35, 195, 215, 254, 280, 335, 508
CviKI_1	RGCY	8 cut(s)	5, 35, 195, 215, 254, 280, 335, 508
CviQI	GTAC	2 cut(s)	53, 287
DdeI	CTNAG	3 cut(s)	172, 210, 293
DpnI	GATC	5 cut(s)	119, 137, 405, 472, 489
DpnII	GATC	5 cut(s)	117, 135, 403, 470, 487
DraIII	CACNNNGTG	1 cut(s)	313
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	2 cut(s)	3, 33
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	2 cut(s)	313, 499
FaiI	YATR	6 cut(s)	311, 387, 389, 497, 533, 589
FatI	CATG	2 cut(s)	309, 495
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	5 cut(s)	100, 196, 252, 506, 509
FokI	GGATG	2 cut(s)	455, 462
Fsp4HI	GCNGC	5 cut(s)	100, 196, 252, 506, 509
GluI	GCNGC	5 cut(s)	100, 196, 252, 506, 509
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	5, 35, 215
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	4 cut(s)	47, 133, 150, 256
Hin1I	GRCGYC	2 cut(s)	186, 267
Hin1II	CATG	2 cut(s)	313, 499
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	168, 230, 583
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	139, 145, 406
Hpy166II	GTNNAC	2 cut(s)	61, 299
Hpy188I	TCNGA	6 cut(s)	140, 175, 238, 275, 294, 487
Hpy188III	TCNNGA	3 cut(s)	74, 115, 559
Hpy8I	GTNNAC	2 cut(s)	61, 299
Hpy99I	CGWCG	2 cut(s)	41, 188
HpyAV	CCTTC	3 cut(s)	277, 363, 461
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	5 cut(s)	51, 55, 78, 186, 301
HpyCH4V	TGCA	2 cut(s)	99, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	172, 210, 293
HpySE526I	ACGT	5 cut(s)	51, 55, 78, 186, 301
Hsp92I	GRCGYC	2 cut(s)	186, 267
Hsp92II	CATG	2 cut(s)	313, 499
KpnI	GGTACC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	117, 135, 403, 470, 487
LpnPI	CCDG	9 cut(s)	25, 59, 102, 113, 140, 166, 277, 349, 504
Lsp1109I	GCAGC	4 cut(s)	111, 263, 495, 517
LweI	GCATC	2 cut(s)	148, 229
MaeII	ACGT	5 cut(s)	51, 55, 78, 186, 301
MaeIII	GTNAC	5 cut(s)	14, 47, 145, 205, 559
MalI	GATC	5 cut(s)	119, 137, 405, 472, 489
MboI	GATC	5 cut(s)	117, 135, 403, 470, 487
MhlI	GDGCHC	2 cut(s)	307, 558
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	355
MluI	ACGCGT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	8 cut(s)	75, 160, 226, 244, 281, 300, 433, 571
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	254, 508
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	5 cut(s)	117, 135, 403, 470, 487
NlaIII	CATG	2 cut(s)	313, 499
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	5 cut(s)	14, 47, 145, 205, 559
OliI	CACNNNNGTG	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 264
PfeI	GAWTC	2 cut(s)	230, 583
Pfl23II	CGTACG	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	101, 197, 253, 507, 510
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspLI	CGTACG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	288
PsyI	GACNNNGTC	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	254, 508
RsaI	GTAC	2 cut(s)	54, 288
RsaNI	GTAC	2 cut(s)	53, 287
RseI	CAYNNNNRTG	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	59
SatI	GCNGC	5 cut(s)	100, 196, 252, 506, 509
Sau3AI	GATC	5 cut(s)	117, 135, 403, 470, 487
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	2 cut(s)	307, 558
SfaNI	GCATC	2 cut(s)	148, 229
SfcI	CTRYAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	355
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	3 cut(s)	131, 196, 511
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	5 cut(s)	54, 58, 81, 189, 304
TaqI	TCGA	5 cut(s)	60, 120, 222, 228, 402
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	355
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	230, 583
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	5 cut(s)	14, 47, 145, 205, 559
TseI	GCWGC	4 cut(s)	99, 251, 505, 508
Tsp45I	GTSAC	5 cut(s)	14, 47, 145, 205, 559
TspDTI	ATGAA	2 cut(s)	341, 374
TspRI	CASTG	1 cut(s)	19
Tth111I	GACNNNGTC	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.