Rh4DG169100

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009705
Physical Location & Seq
Forward (+)
33667491 .. 33678700
11210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG169100.1

Sequence Viewer

Length: 678 bp
ATGAACGAAGGTGCAGAACCATCTCCCAGCACTTTGAGAAAGCTCTCACCCATCTCCAAATTGAACATGGCCATGAGAATAGCCAGTGACTATTGGGAAGTGGTGGGCGACGCTCTCTGTGACGTATGTGTCAGCCCAGATTTTGTGGACGTCGTTTCTGAACCAGAAAACGAGGTTCTATGCACCACCAAGTTCTTGATCGATATCCAGGCGGTGATCAGACGCGTCACCTCCTGCGATGCCGAACGACTCTCAGACTTGGACGACGTCATCAGCCGCACGAGTGTGACTGAGGCCTCAATTGAACTCTACTCTTCTAACTCAGACGAAGAAGCTGCAGTCTCCAACGCACTCCGAGAGCTGAAGGTACCACTGAATGAACGCGTCCCCATGGTGCAGAGAATAATGTACAAAGCCTGCGAGATAGAAAATGAGAATAGGTGTTATGGAAGCAGAAAGATTGCTCATATGTCGGTGAAGATCGATCTTATTGTTGTTGATGATGATGGTGGCGACGCAGATGAGGATGGTATTGTGGAGTGCTGTCTTGATGGATCACATCCTTACCCGGATCCTTCCATGGTAGAGCAGCTACAGAAAACTGGGGTTTGCCCTATGTGTGATGATGAAAGGGAAGTGTACTGCTTGACAAAGATGGAGAATGAGGGGATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

225

Amino Acids

24.98

Weight (kDa)

4.28

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AatII GACGTC 2 cut(s) 153, 270
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 367
AccII CGCG 2 cut(s) 225, 384
AciI CCGC 2 cut(s) 212, 277
AclWI GGATC 3 cut(s) 562, 566, 579
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 2 cut(s) 150, 267
AfaI GTAC 3 cut(s) 369, 410, 641
AflIII ACRYGT 2 cut(s) 223, 382
AgsI TTSAA 2 cut(s) 64, 305
AjnI CCWGG 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 4 cut(s) 43, 335, 361, 592
AluI AGCT 4 cut(s) 43, 335, 361, 592
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 3 cut(s) 562, 566, 579
AoxI GGCC 2 cut(s) 69, 294
ApeKI GCWGC 2 cut(s) 335, 589
Asp718I GGTACC 1 cut(s) 367
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 4 cut(s) 39, 220, 226, 487
BalI TGGCCA 1 cut(s) 71
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 367
BauI CACGAG 1 cut(s) 280
BbvI GCAGC 2 cut(s) 322, 601
BccI CCATC 6 cut(s) 28, 59, 500, 521, 545, 649
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 1 cut(s) 346
BfmI CTRYAG 2 cut(s) 336, 593
BisI GCNGC 3 cut(s) 277, 336, 590
BlsI GCNGC 3 cut(s) 278, 337, 591
Bme1390I CCNGG 2 cut(s) 209, 569
BmiI GGNNCC 2 cut(s) 369, 573
BmrFI CCNGG 2 cut(s) 209, 569
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 612
BpuMI CCSGG 1 cut(s) 569
Bsa29I ATCGAT 2 cut(s) 201, 483
BsaBI GATNNNNATC 1 cut(s) 203
BsaHI GRCGYC 2 cut(s) 150, 267
BsaJI CCNNGG 2 cut(s) 390, 579
Bse1I ACTGG 2 cut(s) 84, 607
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 2 cut(s) 201, 483
BseDI CCNNGG 2 cut(s) 390, 579
BseGI GGATG 2 cut(s) 532, 559
BseJI GATNNNNATC 1 cut(s) 203
BseMII CTCAG 3 cut(s) 267, 282, 336
BseNI ACTGG 2 cut(s) 84, 607
BseXI GCAGC 2 cut(s) 322, 601
BseYI CCCAGC 1 cut(s) 26
BsgI GTGCAG 2 cut(s) 33, 416
Bsh1236I CGCG 2 cut(s) 225, 384
BshFI GGCC 2 cut(s) 71, 296
BshNI GGYRCC 1 cut(s) 367
BshVI ATCGAT 2 cut(s) 201, 483
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 2 cut(s) 71, 296
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 6 cut(s) 198, 216, 480, 484, 554, 571
Bsp19I CCATGG 2 cut(s) 390, 579
BspACI CCGC 2 cut(s) 212, 277
BspANI GGCC 2 cut(s) 71, 296
BspCNI CTCAG 3 cut(s) 266, 283, 335
BspDI ATCGAT 2 cut(s) 201, 483
BspFNI CGCG 2 cut(s) 225, 384
BspLI GGNNCC 2 cut(s) 369, 573
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 3 cut(s) 562, 566, 579
BspT107I GGYRCC 1 cut(s) 367
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 2 cut(s) 84, 607
BssECI CCNNGG 2 cut(s) 390, 579
BssMI GATC 6 cut(s) 198, 216, 480, 484, 554, 571
BssNI GRCGYC 2 cut(s) 150, 267
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 2 cut(s) 390, 579
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 319
BstACI GRCGYC 2 cut(s) 150, 267
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 253, 291, 322
BstDSI CCRYGG 2 cut(s) 390, 579
BstF5I GGATG 2 cut(s) 532, 559
BstFNI CGCG 2 cut(s) 225, 384
BstKTI GATC 6 cut(s) 201, 219, 483, 487, 557, 574
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 6 cut(s) 198, 216, 480, 484, 554, 571
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 207, 567
BstSFI CTRYAG 2 cut(s) 336, 593
BstUI CGCG 2 cut(s) 225, 384
BstV1I GCAGC 2 cut(s) 322, 601
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu15I ATCGAT 2 cut(s) 201, 483
BsuRI GGCC 2 cut(s) 71, 296
BsuTUI ATCGAT 2 cut(s) 201, 483
BtgI CCRYGG 2 cut(s) 390, 579
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 532, 559
BtsIMutI CAGTG 2 cut(s) 91, 371
Cac8I GCNNGC 1 cut(s) 418
ClaI ATCGAT 2 cut(s) 201, 483
CseI GACGC 5 cut(s) 119, 214, 231, 373, 524
Csp6I GTAC 3 cut(s) 368, 409, 640
CviAII CATG 4 cut(s) 67, 73, 391, 580
CviQI GTAC 3 cut(s) 368, 409, 640
DdeI CTNAG 3 cut(s) 253, 291, 322
DpnI GATC 6 cut(s) 200, 218, 482, 486, 556, 573
DpnII GATC 6 cut(s) 198, 216, 480, 484, 554, 571
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 390, 579
Eco147I AGGCCT 1 cut(s) 296
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 207
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 390, 579
ErhI CCWWGG 2 cut(s) 390, 579
FaeI CATG 4 cut(s) 70, 76, 394, 583
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 66, 72, 390, 579
FauNDI CATATG 1 cut(s) 468
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 277, 336, 590
FokI GGATG 2 cut(s) 539, 546
Fsp4HI GCNGC 3 cut(s) 277, 336, 590
GluI GCNGC 3 cut(s) 277, 336, 590
GsaI CCCAGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 71, 296
HapII CCGG 1 cut(s) 569
HgaI GACGC 5 cut(s) 119, 214, 231, 373, 524
Hin1I GRCGYC 2 cut(s) 150, 267
Hin1II CATG 4 cut(s) 70, 76, 394, 583
HinfI GANTC 2 cut(s) 249, 670
HpaII CCGG 1 cut(s) 569
HphI GGTGA 4 cut(s) 39, 220, 226, 487
Hpy166II GTNNAC 2 cut(s) 148, 640
Hpy188I TCNGA 5 cut(s) 160, 221, 256, 325, 356
Hpy188III TCNNGA 2 cut(s) 196, 548
Hpy8I GTNNAC 2 cut(s) 148, 640
Hpy99I CGWCG 4 cut(s) 113, 155, 269, 518
HpyAV CCTTC 2 cut(s) 358, 585
HpyCH4IV ACGT 3 cut(s) 123, 150, 267
HpyCH4V TGCA 4 cut(s) 14, 183, 338, 397
HpyF3I CTNAG 3 cut(s) 253, 291, 322
HpySE526I ACGT 3 cut(s) 123, 150, 267
Hsp92I GRCGYC 2 cut(s) 150, 267
Hsp92II CATG 4 cut(s) 70, 76, 394, 583
KpnI GGTACC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 6 cut(s) 198, 216, 480, 484, 554, 571
Lsp1109I GCAGC 2 cut(s) 322, 601
LweI GCATC 1 cut(s) 229
MaeII ACGT 3 cut(s) 123, 150, 267
MaeIII GTNAC 4 cut(s) 86, 119, 226, 286
MalI GATC 6 cut(s) 200, 218, 482, 486, 556, 573
MboI GATC 6 cut(s) 198, 216, 480, 484, 554, 571
MboII GAAGA 3 cut(s) 306, 341, 490
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 2 cut(s) 59, 300
MluI ACGCGT 2 cut(s) 223, 382
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 6 cut(s) 166, 241, 286, 307, 517, 658
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 71, 284
Msp20I TGGCCA 1 cut(s) 71
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 2 cut(s) 209, 569
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 2 cut(s) 225, 384
NciI CCSGG 1 cut(s) 569
NcoI CCATGG 2 cut(s) 390, 579
NdeI CATATG 1 cut(s) 468
NdeII GATC 6 cut(s) 198, 216, 480, 484, 554, 571
NlaIII CATG 4 cut(s) 70, 76, 394, 583
NlaIV GGNNCC 2 cut(s) 369, 573
NmuCI GTSAC 4 cut(s) 86, 119, 226, 286
OliI CACNNNNGTG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 296
PfeI GAWTC 1 cut(s) 670
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 278, 337, 591
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 369, 573
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 571
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 3 cut(s) 369, 410, 641
RsaNI GTAC 3 cut(s) 368, 409, 640
RseI CAYNNNNRTG 2 cut(s) 71, 284
SatI GCNGC 3 cut(s) 277, 336, 590
Sau3AI GATC 6 cut(s) 198, 216, 480, 484, 554, 571
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 2 cut(s) 209, 569
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 2 cut(s) 336, 593
SmiMI CAYNNNNRTG 2 cut(s) 71, 284
Sse9I AATT 2 cut(s) 59, 300
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 2 cut(s) 212, 277
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 207, 567
StyI CCWWGG 2 cut(s) 390, 579
TaiI ACGT 3 cut(s) 126, 153, 270
TaqI TCGA 2 cut(s) 201, 483
TasI AATT 2 cut(s) 59, 300
TatI WGTACW 2 cut(s) 408, 639
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 670
TscAI CASTG 2 cut(s) 91, 378
TseFI GTSAC 4 cut(s) 86, 119, 226, 286
TseI GCWGC 2 cut(s) 335, 589
Tsp45I GTSAC 4 cut(s) 86, 119, 226, 286
TspDTI ATGAA 3 cut(s) 17, 393, 642
TspRI CASTG 2 cut(s) 91, 378
Tth111I GACNNNGTC 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
ZraI GACGTC 2 cut(s) 151, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.