Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009705

Physical Location & Seq

Genomic Coordinates Reverse (-)

74915279 .. 74915907

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCCATGGCCAGTGACTATTGGACGGGCCGCCGGGAAGTGGTGGTGGGCGATGCTCTCAGGGACGTACGTGTCAACCCACATTTTGTGGACGTCGTTTTTGAACCAGAAAACGAGGTGCTATGCGCAACCATGTTCTTGATCGATTTCCAGGCGGTGATCAGACGCCTCACCTCCTGCGATGCCGAACGACTCTCAAACTTGGACGACGTCATCAGCCGCACGATTGTAACTGAGGCCTGTATCGAACTCGATTCCTCTAACTCATACGAAGAAGCAGCTGCCGTGTCCGACTTGCTTCGGCAGCTGAAGATCGATGTTATTGTCGTTGATGATGATGGTGACGACACAGATGAGGATGGTATTGCAATGTGTTGCCTTGAAGGATCACATCCTTACTCGGATCGCTCCATGGTAGAGCAGCTGCAGAAAACTGGGGTTTGCCCTATGTGTGATGATGATAGGAAAGTGTTCTTGACAAAGATGGAGAGCGAGGGGGTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

4.16

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45570
rosa_chinensis	RchiOBHm_Chr4g0412611
rosa_laevigata	RLG00000008273 RLG00000021407
rosa_multiflora	Rmu_sc0002136.1_g000001 Rmu_sc0016141.1_g000010 Rmu_sc0032469.1_g000005 Rmu_ssc0000381.1_g000035
rosa_roxburghii	Rroxscaffold_5G00356730 Rroxscaffold_5G00356790 Rroxscaffold_7G00189160
rosa_rugosa	Rorug04G0102800
rosa_samantha	Rh4BG173600 Rh4BG173700 Rh4CG184600 Rh4CG185100 Rh4CG185200 Rh4DG169000 Rh4DG169100 Rh4DG169900 Rh4DG170400 Rh6AG165500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AatII	GACGTC	2 cut(s)	96, 213
Acc16I	TGCGCA	1 cut(s)	127
AciI	CCGC	3 cut(s)	31, 155, 220
AclWI	GGATC	2 cut(s)	394, 411
AcoI	YGGCCR	2 cut(s)	3, 9
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	3 cut(s)	93, 166, 210
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	104, 383
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	281, 307, 424
AluI	AGCT	3 cut(s)	281, 307, 424
AlwI	GGATC	2 cut(s)	394, 411
AoxI	GGCC	4 cut(s)	3, 9, 28, 237
ApeKI	GCWGC	5 cut(s)	278, 281, 304, 421, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	163, 169, 353
BalI	TGGCCA	2 cut(s)	5, 11
BbvI	GCAGC	5 cut(s)	268, 290, 316, 411, 433
BccI	CCATC	3 cut(s)	332, 353, 478
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	425, 503
BisI	GCNGC	7 cut(s)	31, 220, 279, 282, 305, 422, 425
BlsI	GCNGC	7 cut(s)	32, 221, 280, 283, 306, 423, 426
Bme1390I	CCNGG	2 cut(s)	35, 152
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	35, 152
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	43, 172
BmuI	ACTGGG	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	35
Bsa29I	ATCGAT	2 cut(s)	144, 315
BsaAI	YACGTR	1 cut(s)	71
BsaHI	GRCGYC	3 cut(s)	93, 166, 210
BsaJI	CCNNGG	2 cut(s)	6, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	12, 439
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	152
BseCI	ATCGAT	2 cut(s)	144, 315
BseDI	CCNNGG	2 cut(s)	6, 411
BseGI	GGATG	2 cut(s)	364, 391
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	73, 225
BseNI	ACTGG	2 cut(s)	12, 439
BseXI	GCAGC	5 cut(s)	268, 290, 316, 411, 433
BshFI	GGCC	4 cut(s)	5, 11, 30, 239
BshVI	ATCGAT	2 cut(s)	144, 315
BsiSI	CCGG	1 cut(s)	34
BsiWI	CGTACG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	5, 11, 30, 239
Bsp143I	GATC	5 cut(s)	141, 159, 312, 386, 403
Bsp19I	CCATGG	2 cut(s)	6, 411
BspACI	CCGC	3 cut(s)	31, 155, 220
BspANI	GGCC	4 cut(s)	5, 11, 30, 239
BspCNI	CTCAG	2 cut(s)	72, 226
BspDI	ATCGAT	2 cut(s)	144, 315
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	2 cut(s)	394, 411
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	12, 439
BssECI	CCNNGG	2 cut(s)	6, 411
BssMI	GATC	5 cut(s)	141, 159, 312, 386, 403
BssNI	GRCGYC	3 cut(s)	93, 166, 210
BssT1I	CCWWGG	2 cut(s)	6, 411
Bst2UI	CCWGG	1 cut(s)	152
BstACI	GRCGYC	3 cut(s)	93, 166, 210
BstBAI	YACGTR	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	59, 234
BstDSI	CCRYGG	2 cut(s)	6, 411
BstF5I	GGATG	2 cut(s)	364, 391
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	5 cut(s)	144, 162, 315, 389, 406
BstMBI	GATC	5 cut(s)	141, 159, 312, 386, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	33, 150
BstSFI	CTRYAG	2 cut(s)	425, 503
BstV1I	GCAGC	5 cut(s)	268, 290, 316, 411, 433
Bsu15I	ATCGAT	2 cut(s)	144, 315
BsuRI	GGCC	4 cut(s)	5, 11, 30, 239
BsuTUI	ATCGAT	2 cut(s)	144, 315
BtgI	CCRYGG	2 cut(s)	6, 411
BtgZI	GCGATG	2 cut(s)	66, 195
BtsCI	GGATG	2 cut(s)	364, 391
BtsIMutI	CAGTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	28
ClaI	ATCGAT	2 cut(s)	144, 315
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	3 cut(s)	7, 133, 412
CviJI	RGCY	8 cut(s)	5, 11, 30, 219, 239, 281, 307, 424
CviKI_1	RGCY	8 cut(s)	5, 11, 30, 219, 239, 281, 307, 424
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	59, 234
DpnI	GATC	5 cut(s)	143, 161, 314, 388, 405
DpnII	GATC	5 cut(s)	141, 159, 312, 386, 403
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	2 cut(s)	3, 9
Eco130I	CCWWGG	2 cut(s)	6, 411
Eco147I	AGGCCT	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	6, 411
ErhI	CCWWGG	2 cut(s)	6, 411
FaeI	CATG	3 cut(s)	10, 136, 415
FaiI	YATR	7 cut(s)	8, 124, 134, 268, 413, 449, 505
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	6, 132, 411
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	7 cut(s)	31, 220, 279, 282, 305, 422, 425
FokI	GGATG	2 cut(s)	371, 378
Fsp4HI	GCNGC	7 cut(s)	31, 220, 279, 282, 305, 422, 425
FspI	TGCGCA	1 cut(s)	127
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	7 cut(s)	31, 220, 279, 282, 305, 422, 425
HaeIII	GGCC	4 cut(s)	5, 11, 30, 239
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	3 cut(s)	93, 166, 210
Hin1II	CATG	3 cut(s)	10, 136, 415
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	192, 254
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	3 cut(s)	163, 169, 353
Hpy166II	GTNNAC	2 cut(s)	76, 91
Hpy188I	TCNGA	3 cut(s)	164, 292, 403
Hpy188III	TCNNGA	2 cut(s)	139, 475
Hpy8I	GTNNAC	2 cut(s)	76, 91
Hpy99I	CGWCG	2 cut(s)	98, 212
HpyAV	CCTTC	1 cut(s)	377
HpyCH4IV	ACGT	4 cut(s)	66, 70, 93, 210
HpyCH4V	TGCA	2 cut(s)	368, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	2 cut(s)	59, 234
HpySE526I	ACGT	4 cut(s)	66, 70, 93, 210
Hsp92I	GRCGYC	3 cut(s)	93, 166, 210
Hsp92II	CATG	3 cut(s)	10, 136, 415
HspAI	GCGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	141, 159, 312, 386, 403
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	9 cut(s)	25, 46, 47, 120, 137, 164, 190, 253, 420
Lsp1109I	GCAGC	5 cut(s)	268, 290, 316, 411, 433
LweI	GCATC	2 cut(s)	43, 172
MaeII	ACGT	4 cut(s)	66, 70, 93, 210
MaeIII	GTNAC	3 cut(s)	14, 229, 341
MalI	GATC	5 cut(s)	143, 161, 314, 388, 405
MboI	GATC	5 cut(s)	141, 159, 312, 386, 403
MboII	GAAGA	2 cut(s)	284, 322
MlsI	TGGCCA	2 cut(s)	5, 11
MluNI	TGGCCA	2 cut(s)	5, 11
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	109, 179, 184, 229, 268, 349, 487
Mox20I	TGGCCA	2 cut(s)	5, 11
MroXI	GAANNNNTTC	1 cut(s)	470
MscI	TGGCCA	2 cut(s)	5, 11
Msp20I	TGGCCA	2 cut(s)	5, 11
MspA1I	CMGCKG	3 cut(s)	281, 307, 424
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	35, 152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	35
NcoI	CCATGG	2 cut(s)	6, 411
NdeII	GATC	5 cut(s)	141, 159, 312, 386, 403
NlaIII	CATG	3 cut(s)	10, 136, 415
NmuCI	GTSAC	2 cut(s)	14, 341
NsbI	TGCGCA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	254
Pfl23II	CGTACG	1 cut(s)	67
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	7 cut(s)	32, 221, 280, 283, 306, 423, 426
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Ppu21I	YACGTR	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspLI	CGTACG	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	209
PvuII	CAGCTG	3 cut(s)	281, 307, 424
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SatI	GCNGC	7 cut(s)	31, 220, 279, 282, 305, 422, 425
Sau3AI	GATC	5 cut(s)	141, 159, 312, 386, 403
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	35, 152
SetI	ASST	9 cut(s)	69, 73, 96, 120, 176, 213, 283, 309, 426
SfaNI	GCATC	2 cut(s)	43, 172
SfcI	CTRYAG	2 cut(s)	425, 503
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	31, 155, 220
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	33, 150
StyI	CCWWGG	2 cut(s)	6, 411
TaiI	ACGT	4 cut(s)	69, 73, 96, 213
TaqI	TCGA	4 cut(s)	144, 246, 252, 315
TauI	GCSGC	2 cut(s)	33, 222
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	14, 341
TseI	GCWGC	5 cut(s)	278, 281, 304, 421, 424
Tsp45I	GTSAC	2 cut(s)	14, 341
TspRI	CASTG	1 cut(s)	19
Tth111I	GACNNNGTC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	470
ZraI	GACGTC	2 cut(s)	94, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.