Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002136.1

Orthogroup ID

OG0009705

Physical Location & Seq

Genomic Coordinates Reverse (-)

2656 .. 3261

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002136.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgagaatagccagtgactattgggaagtggtgggcgacgctctctgtgacgtatgtgtcaacccagattttgtggacgtcgtttctgaaccagaaaacgaggtgctatgcaccaccaagttcttgatcgatatccaggcggtgatcagacgcgtcacctcctgcgatgccgaacgactctcagacttggacgacgtcatcagccgcacgagtgtgactgaggcctcaattgaactctactcttctaactcagacgaagaagctgcagtctccaacgcactccgagagctgaaggtaccactgaatgaacgtgtccccatggtgcagagaataatgtacaaagcctgcgagatagaaaatgagaataggtgttatggaagcagaaagattgctcatatgtcggtgaagatcgatcttattgttgttgatgatgatggtggcgacgcagatgaggatggtattgtggagtgctgtcttgatggatcacatccttacccggatccttccatggtagagcagctacagaaaactggggtttgccctatgtgtgatgatgaaagggaagtgtactgcttgacaaagatggagaacgaggggattctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

201

Amino Acids

22.45

Weight (kDa)

4.19

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45570
rosa_chinensis	RchiOBHm_Chr4g0412611
rosa_laevigata	RLG00000008273 RLG00000021407
rosa_multiflora	Rmu_sc0002136.1_g000001 Rmu_sc0016141.1_g000010 Rmu_sc0032469.1_g000005 Rmu_ssc0000381.1_g000035
rosa_roxburghii	Rroxscaffold_5G00356730 Rroxscaffold_5G00356790 Rroxscaffold_7G00189160
rosa_rugosa	Rorug04G0102800
rosa_samantha	Rh4BG173600 Rh4BG173700 Rh4CG184600 Rh4CG185100 Rh4CG185200 Rh4DG169000 Rh4DG169100 Rh4DG169900 Rh4DG170400 Rh6AG165500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	2 cut(s)	81, 198
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	140, 205
AclWI	GGATC	3 cut(s)	490, 494, 507
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	2 cut(s)	78, 195
AfaI	GTAC	3 cut(s)	297, 338, 569
AflIII	ACRYGT	2 cut(s)	151, 310
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	135
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	263, 289, 520
AluI	AGCT	3 cut(s)	263, 289, 520
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	3 cut(s)	490, 494, 507
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	263, 517
Asp718I	GGTACC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	148, 154, 415
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	250, 529
BccI	CCATC	4 cut(s)	428, 449, 473, 577
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	2 cut(s)	264, 521
BisI	GCNGC	3 cut(s)	205, 264, 518
BlsI	GCNGC	3 cut(s)	206, 265, 519
Bme1390I	CCNGG	2 cut(s)	137, 497
BmiI	GGNNCC	2 cut(s)	297, 501
BmrFI	CCNGG	2 cut(s)	137, 497
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	497
Bsa29I	ATCGAT	2 cut(s)	129, 411
BsaBI	GATNNNNATC	1 cut(s)	131
BsaHI	GRCGYC	2 cut(s)	78, 195
BsaJI	CCNNGG	2 cut(s)	318, 507
Bse1I	ACTGG	2 cut(s)	12, 535
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	2 cut(s)	129, 411
BseDI	CCNNGG	2 cut(s)	318, 507
BseGI	GGATG	2 cut(s)	460, 487
BseJI	GATNNNNATC	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	195, 210, 264
BseNI	ACTGG	2 cut(s)	12, 535
BseXI	GCAGC	2 cut(s)	250, 529
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	295
BshVI	ATCGAT	2 cut(s)	129, 411
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
Bsp19I	CCATGG	2 cut(s)	318, 507
BspACI	CCGC	2 cut(s)	140, 205
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	3 cut(s)	194, 211, 263
BspDI	ATCGAT	2 cut(s)	129, 411
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	297, 501
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	3 cut(s)	490, 494, 507
BspT107I	GGYRCC	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	12, 535
BssECI	CCNNGG	2 cut(s)	318, 507
BssMI	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
BssNI	GRCGYC	2 cut(s)	78, 195
BssSI	CACGAG	1 cut(s)	208
BssT1I	CCWWGG	2 cut(s)	318, 507
Bst2BI	CACGAG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	247
BstACI	GRCGYC	2 cut(s)	78, 195
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	3 cut(s)	181, 219, 250
BstDSI	CCRYGG	2 cut(s)	318, 507
BstF5I	GGATG	2 cut(s)	460, 487
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	6 cut(s)	129, 147, 411, 415, 485, 502
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	135, 495
BstSFI	CTRYAG	2 cut(s)	264, 521
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	250, 529
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu15I	ATCGAT	2 cut(s)	129, 411
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	2 cut(s)	129, 411
BtgI	CCRYGG	2 cut(s)	318, 507
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	460, 487
BtsIMutI	CAGTG	2 cut(s)	19, 299
Cac8I	GCNNGC	1 cut(s)	346
ClaI	ATCGAT	2 cut(s)	129, 411
CseI	GACGC	4 cut(s)	47, 142, 159, 452
Csp6I	GTAC	3 cut(s)	296, 337, 568
CviAII	CATG	2 cut(s)	319, 508
CviJI	RGCY	7 cut(s)	11, 204, 224, 263, 289, 344, 520
CviKI_1	RGCY	7 cut(s)	11, 204, 224, 263, 289, 344, 520
CviQI	GTAC	3 cut(s)	296, 337, 568
DdeI	CTNAG	3 cut(s)	181, 219, 250
DpnI	GATC	6 cut(s)	128, 146, 410, 414, 484, 501
DpnII	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	318, 507
Eco147I	AGGCCT	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	318, 507
ErhI	CCWWGG	2 cut(s)	318, 507
FaeI	CATG	2 cut(s)	322, 511
FaiI	YATR	9 cut(s)	55, 109, 320, 375, 396, 398, 509, 545, 604
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	318, 507
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	205, 264, 518
FokI	GGATG	2 cut(s)	467, 474
Fsp4HI	GCNGC	3 cut(s)	205, 264, 518
GluI	GCNGC	3 cut(s)	205, 264, 518
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	4 cut(s)	47, 142, 159, 452
Hin1I	GRCGYC	2 cut(s)	78, 195
Hin1II	CATG	2 cut(s)	322, 511
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	177, 598
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	3 cut(s)	148, 154, 415
Hpy166II	GTNNAC	3 cut(s)	61, 76, 568
Hpy188I	TCNGA	5 cut(s)	88, 149, 184, 253, 284
Hpy188III	TCNNGA	2 cut(s)	124, 476
Hpy8I	GTNNAC	3 cut(s)	61, 76, 568
Hpy99I	CGWCG	4 cut(s)	41, 83, 197, 446
HpyAV	CCTTC	2 cut(s)	286, 513
HpyCH4IV	ACGT	4 cut(s)	51, 78, 195, 310
HpyCH4V	TGCA	3 cut(s)	111, 266, 325
HpyF3I	CTNAG	3 cut(s)	181, 219, 250
HpySE526I	ACGT	4 cut(s)	51, 78, 195, 310
Hsp92I	GRCGYC	2 cut(s)	78, 195
Hsp92II	CATG	2 cut(s)	322, 511
KpnI	GGTACC	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
LpnPI	CCDG	9 cut(s)	25, 78, 105, 122, 149, 175, 358, 510, 516
Lsp1109I	GCAGC	2 cut(s)	250, 529
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	4 cut(s)	51, 78, 195, 310
MaeIII	GTNAC	4 cut(s)	14, 47, 154, 214
MalI	GATC	6 cut(s)	128, 146, 410, 414, 484, 501
MboI	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
MboII	GAAGA	3 cut(s)	234, 269, 418
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	1 cut(s)	228
MluI	ACGCGT	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	6 cut(s)	94, 169, 214, 235, 445, 586
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	137, 497
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	1 cut(s)	497
NcoI	CCATGG	2 cut(s)	318, 507
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
NlaIII	CATG	2 cut(s)	322, 511
NlaIV	GGNNCC	2 cut(s)	297, 501
NmuCI	GTSAC	4 cut(s)	14, 47, 154, 214
OliI	CACNNNNGTG	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	598
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	206, 265, 519
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	297, 501
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	3 cut(s)	297, 338, 569
RsaNI	GTAC	3 cut(s)	296, 337, 568
RseI	CAYNNNNRTG	1 cut(s)	212
SatI	GCNGC	3 cut(s)	205, 264, 518
Sau3AI	GATC	6 cut(s)	126, 144, 408, 412, 482, 499
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	137, 497
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	2 cut(s)	264, 521
SmiMI	CAYNNNNRTG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	228
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	2 cut(s)	140, 205
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	135, 495
StyI	CCWWGG	2 cut(s)	318, 507
TaiI	ACGT	4 cut(s)	54, 81, 198, 313
TaqI	TCGA	2 cut(s)	129, 411
TasI	AATT	1 cut(s)	228
TatI	WGTACW	2 cut(s)	336, 567
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	598
TscAI	CASTG	2 cut(s)	19, 306
TseFI	GTSAC	4 cut(s)	14, 47, 154, 214
TseI	GCWGC	2 cut(s)	263, 517
Tsp45I	GTSAC	4 cut(s)	14, 47, 154, 214
TspDTI	ATGAA	2 cut(s)	321, 570
TspRI	CASTG	2 cut(s)	19, 306
Tth111I	GACNNNGTC	1 cut(s)	194
ZraI	GACGTC	2 cut(s)	79, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.