FvH4_6g45650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006053
Physical Location & Seq
Forward (+)
34997828 .. 34999487
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45650.t1

Sequence Viewer

Length: 402 bp
ATGGTGATGATGGGGTTGGATAGGTTGCTGGGGAATTTGAAGTCCAAGTTCAGGTCCTTGAAGATGAAGAAACCTGCAGCTGAGGATTATAACAAGATCGAAAAGAGCGATAGCATGAGAGTCGAAATAAGGAGCAAGAAGGCCAGAAAGCTCATTGAGAAGACTCTCAAAGTTGCAGACTCTCCCAAGACGAAAACGGATATGAGAGCGACAGAAATGGCTGAGATGATGAAAGAAGATAACCAACGAGTTAACTATACAAAGTCTTCCATTTCTCATTATCCAGGTTTAAAGCAACTGGGGTTCTGGTTCAGCTTTCATGAAACTTCAACAGTCATGGCGTTTGCACAATATAATCTGGACAATCAGATGAATGCTCTGTATATTTTGAACATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.5

Weight (kDa)

9.75

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 4 cut(s) 40, 61, 330, 391
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 80, 151, 315
AluI AGCT 3 cut(s) 80, 151, 315
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 167, 258
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 308
BpiI GAAGAC 2 cut(s) 167, 258
Bpu10I CCTNAGC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 72, 213
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 51
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 96
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 73, 214
BspHI TCATGA 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 303
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 81, 222
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 2 cut(s) 167, 258
BsuRI GGCC 1 cut(s) 143
BveI ACCTGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 3 cut(s) 115, 320, 337
CviJI RGCY 5 cut(s) 80, 143, 151, 221, 315
CviKI_1 RGCY 5 cut(s) 80, 143, 151, 221, 315
DdeI CTNAG 2 cut(s) 81, 222
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DraI TTTAAA 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 118, 323, 340
FaiI YATR 8 cut(s) 90, 116, 203, 258, 321, 338, 354, 384
FatI CATG 3 cut(s) 114, 319, 336
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 3 cut(s) 118, 323, 340
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 120, 163, 179
HpaI GTTAAC 1 cut(s) 253
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 2 cut(s) 320, 359
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 77, 176, 347
HpyF3I CTNAG 2 cut(s) 81, 222
Hsp92II CATG 3 cut(s) 118, 323, 340
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 9 cut(s) 14, 37, 87, 157, 270, 284, 292, 297, 344
Lsp1109I GCAGC 1 cut(s) 89
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 5 cut(s) 73, 79, 172, 248, 258
MluCI AATT 1 cut(s) 34
MlyI GAGTC 3 cut(s) 129, 157, 173
MnlI CCTC 1 cut(s) 76
MseI TTAA 2 cut(s) 252, 290
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 285
NdeII GATC 1 cut(s) 96
NlaIII CATG 3 cut(s) 118, 323, 340
PagI TCATGA 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 3 cut(s) 128, 157, 173
PpsI GAGTC 3 cut(s) 128, 157, 173
PpuMI RGGWCCY 1 cut(s) 54
PsiI TTATAA 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 283
PspPI GGNCC 1 cut(s) 54
PspPPI RGGWCCY 1 cut(s) 54
PstI CTGCAG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 80
SaqAI TTAA 2 cut(s) 252, 290
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 3 cut(s) 129, 157, 173
ScrFI CCNGG 1 cut(s) 285
SetI ASST 7 cut(s) 26, 56, 76, 82, 153, 289, 317
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 54
Sse9I AATT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 99, 123
TasI AATT 1 cut(s) 34
Tru1I TTAA 2 cut(s) 252, 290
Tru9I TTAA 2 cut(s) 252, 290
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 6 cut(s) 80, 245, 308, 336, 386, 386
TspGWI ACGGA 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.