Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006053

Physical Location & Seq

Genomic Coordinates Reverse (-)

21744316 .. 21744513

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1104700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGACGAACCAGTTGGAGAGCTTGGTGGAGTCGATCAAATCGAAAGTCCGAGCGCTGAAGAAGAAGTCGAAGAAGCCGTACATAAAGATGGACAAAAGCTCCAGCGTCAAGGTCGAGATCCGCAGCAAAAAGGCACGCAAGCTCATCGACAAAACCCTCAAGGCCGCCGACCATCCCGGCAAGCGCCCCATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

7.39

Weight (kDa)

10.49

Isoelectric Point (pI)

23.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19660
fragaria_vesca	FvH4_2g03450 FvH4_6g45650
malus_domestica	MD05G1104700.v1.1 MD10G1109000.v1.1
prunus_persica	Prupe.3G242600_v2.0.a1 Prupe.3G242600_v2.0.a1 Prupe.8G149100_v2.0.a1
pyrus_communis	pycom17g07160
rosa_chinensis	RchiOBHm_Chr2g0163791 RchiOBHm_Chr6g0248611
rosa_roxburghii	Rroxscaffold_2G00087010 Rroxscaffold_6G00403090 Rroxscaffold_7G00213170
rosa_rugosa	Rorug02G0504600 Rorug05G0532500
rosa_samantha	Rh2BG583200 Rh2CG554100 Rh5CG188300 Rh5DG173800 Rh6AG049400 Rh6BG045200 Rh6CG041400 Rh6DG037700
rosa_wichuraiana	Rw2G047330 Rw6G004270 Rw6G004370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	121, 165
AclWI	GGATC	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	80
AfeI	AGCGCT	1 cut(s)	54
AluBI	AGCT	3 cut(s)	21, 99, 142
AluI	AGCT	3 cut(s)	21, 99, 142
AlwI	GGATC	1 cut(s)	112
Aor51HI	AGCGCT	1 cut(s)	54
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	2 cut(s)	55, 186
AsuC2I	CCSGG	1 cut(s)	177
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	82, 180
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	56, 187
BisI	GCNGC	2 cut(s)	124, 165
BlsI	GCNGC	2 cut(s)	125, 166
Bme1390I	CCNGG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bse1I	ACTGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	33, 117
BspACI	CCGC	2 cut(s)	121, 165
BspANI	GGCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	33, 117
BstC8I	GCNNGC	3 cut(s)	136, 140, 182
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	2 cut(s)	56, 187
BstHHI	GCGC	2 cut(s)	55, 186
BstKTI	GATC	2 cut(s)	36, 120
BstMBI	GATC	2 cut(s)	33, 117
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	172
Cac8I	GCNNGC	3 cut(s)	136, 140, 182
CfoI	GCGC	2 cut(s)	55, 186
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	5 cut(s)	21, 76, 99, 142, 164
CviKI_1	RGCY	5 cut(s)	21, 76, 99, 142, 164
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	2 cut(s)	35, 119
DpnII	GATC	2 cut(s)	33, 117
Eco47III	AGCGCT	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	77
FaiI	YATR	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	124, 165
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	124, 165
GlaI	GCGC	2 cut(s)	54, 185
GluI	GCNGC	2 cut(s)	124, 165
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	2 cut(s)	56, 187
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	2 cut(s)	55, 186
Hin6I	GCGC	2 cut(s)	53, 184
HinP1I	GCGC	2 cut(s)	53, 184
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	115
HspAI	GCGC	2 cut(s)	53, 184
Kzo9I	GATC	2 cut(s)	33, 117
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	3 cut(s)	23, 115, 190
Lsp1109I	GCAGC	1 cut(s)	135
MalI	GATC	2 cut(s)	35, 119
MboI	GATC	2 cut(s)	33, 117
MboII	GAAGA	3 cut(s)	70, 73, 82
MflI	RGATCY	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	196
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	33, 117
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 74
PkrI	GCNGC	2 cut(s)	125, 166
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	2 cut(s)	124, 165
Sau3AI	GATC	2 cut(s)	33, 117
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	4 cut(s)	23, 101, 114, 144
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	2 cut(s)	121, 165
StyD4I	CCNGG	1 cut(s)	175
TaqI	TCGA	5 cut(s)	32, 41, 68, 114, 147
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TseI	GCWGC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.