MD10G1109000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006053
Physical Location & Seq
Reverse (-)
17952487 .. 17952684
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1109000.v1.1.491

Sequence Viewer

Length: 198 bp
ATGACGAACCAGTTGGAGAGCTTGGTGGAGTCGATCAAATCGAAAGTTCGAGCGCTGAAGAAGAAGTCGAAGAAGCCGTACATAAAGATGGACAAAAGCTCCAGCGTCAAGGTCGAGATCCGCAGCAAAAAGGCCCGCAAGCTCATTGACAAAACCCTCCAGGCCGCCGACCGTCCCGGCAAGCGCCCCATTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.41

Weight (kDa)

10.6

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 121, 136, 165
AclWI GGATC 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 80
AfeI AGCGCT 1 cut(s) 54
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 3 cut(s) 21, 99, 142
AluI AGCT 3 cut(s) 21, 99, 142
AlwI GGATC 1 cut(s) 112
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 2 cut(s) 132, 162
ApeKI GCWGC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 55, 186
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 56, 187
BisI GCNGC 2 cut(s) 124, 165
BlsI GCNGC 2 cut(s) 125, 166
Bme1390I CCNGG 2 cut(s) 161, 177
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 2 cut(s) 161, 177
BpmI CTGGAG 2 cut(s) 85, 143
BpuMI CCSGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 134, 164
BsiEI CGRYCG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 134, 164
Bsp143I GATC 2 cut(s) 33, 117
BspACI CCGC 3 cut(s) 121, 136, 165
BspANI GGCC 2 cut(s) 134, 164
BspPI GGATC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 10
BssMI GATC 2 cut(s) 33, 117
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 136, 140, 182
BstH2I RGCGCY 2 cut(s) 56, 187
BstHHI GCGC 2 cut(s) 55, 186
BstKTI GATC 2 cut(s) 36, 120
BstMBI GATC 2 cut(s) 33, 117
BstMCI CGRYCG 1 cut(s) 172
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 159, 175
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 2 cut(s) 134, 164
Cac8I GCNNGC 3 cut(s) 136, 140, 182
CfoI GCGC 2 cut(s) 55, 186
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 6 cut(s) 21, 76, 99, 134, 142, 164
CviKI_1 RGCY 6 cut(s) 21, 76, 99, 134, 142, 164
CviQI GTAC 1 cut(s) 79
DpnI GATC 2 cut(s) 35, 119
DpnII GATC 2 cut(s) 33, 117
Eco47III AGCGCT 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 159
FaiI YATR 1 cut(s) 83
FaqI GGGAC 1 cut(s) 159
FauI CCCGC 1 cut(s) 143
Fnu4HI GCNGC 2 cut(s) 124, 165
Fsp4HI GCNGC 2 cut(s) 124, 165
GlaI GCGC 2 cut(s) 54, 185
GluI GCNGC 2 cut(s) 124, 165
GsuI CTGGAG 2 cut(s) 85, 143
HaeII RGCGCY 2 cut(s) 56, 187
HaeIII GGCC 2 cut(s) 134, 164
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 55, 186
Hin6I GCGC 2 cut(s) 53, 184
HinP1I GCGC 2 cut(s) 53, 184
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 173
HspAI GCGC 2 cut(s) 53, 184
Kzo9I GATC 2 cut(s) 33, 117
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 5 cut(s) 23, 115, 146, 173, 190
Lsp1109I GCAGC 1 cut(s) 135
MalI GATC 2 cut(s) 35, 119
MboI GATC 2 cut(s) 33, 117
MboII GAAGA 3 cut(s) 70, 73, 82
MflI RGATCY 1 cut(s) 117
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 1 cut(s) 167
MseI TTAA 1 cut(s) 196
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 161, 177
MvaI CCWGG 1 cut(s) 161
NciI CCSGG 1 cut(s) 177
NdeII GATC 2 cut(s) 33, 117
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 74
PkrI GCNGC 2 cut(s) 125, 166
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 196
SatI GCNGC 2 cut(s) 124, 165
Sau3AI GATC 2 cut(s) 33, 117
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 161, 177
SetI ASST 4 cut(s) 23, 101, 114, 144
SmiMI CAYNNNNRTG 1 cut(s) 86
SsiI CCGC 3 cut(s) 121, 136, 165
StyD4I CCNGG 2 cut(s) 159, 175
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 5 cut(s) 32, 41, 49, 68, 114
TauI GCSGC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TseI GCWGC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.