Rh2CG554100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006053
Physical Location & Seq
Forward (+)
73279245 .. 73284385
5141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG554100.1

Sequence Viewer

Length: 369 bp
ATGGTGACTGGCGGTGTTGCTCCAGGTTGGGGCCTCTCATTCTCAGGGTTCTCTGTTTCCTCTGCCGGAAATCTCAAGGCGAAGAGCGGCTCCAGACCTGAGGCCAGTGGAGGCGAGCCTGAAGGTGGCCACTACTCTGAAAGTAAGTCAAAGGATATAATTCCAAGGCTCATTAGTATTGCGTGGTTGGTGGGGAATTTGAAGTCCAAGTTCAGGTCCTTTAAGATGAAGAAACCAGCTGCAGATTACAACAAGATCGAAAAGAGCGATAGCATGAGAGTCGAAATAAGAAGCAAGAAGGCCAGAAAGCTCATTGAGAAGACACTGAAAGTTGCAGACTCTCCCAAGACGAAAACTTTCGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.21

Weight (kDa)

10.17

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 2 cut(s) 12, 87
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 29, 125, 213
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 239, 310
AluI AGCT 2 cut(s) 239, 310
AoxI GGCC 4 cut(s) 31, 102, 127, 300
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 31, 216
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 216
AxyI CCTNAGG 1 cut(s) 99
BalI TGGCCA 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 88, 240
BlsI GCNGC 2 cut(s) 89, 241
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 31, 216
BmiI GGNNCC 2 cut(s) 32, 91
BmrFI CCNGG 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 6, 76
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 125, 213
Bse1I ACTGG 2 cut(s) 13, 105
Bse21I CCTNAGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 29, 125, 213
BseMII CTCAG 2 cut(s) 57, 90
BseNI ACTGG 2 cut(s) 13, 105
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 4 cut(s) 33, 104, 129, 302
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 3 cut(s) 29, 125, 213
BsnI GGCC 4 cut(s) 33, 104, 129, 302
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 2 cut(s) 12, 87
BspANI GGCC 4 cut(s) 33, 104, 129, 302
BspCNI CTCAG 2 cut(s) 56, 91
BspLI GGNNCC 2 cut(s) 32, 91
BspMAI CTGCAG 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 2 cut(s) 13, 105
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 43, 99
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 33, 104, 129, 302
BtsIMutI CAGTG 2 cut(s) 112, 323
Cac8I GCNNGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 31, 216
CviAII CATG 1 cut(s) 274
CviJI RGCY 9 cut(s) 33, 90, 104, 118, 129, 169, 239, 302, 310
CviKI_1 RGCY 9 cut(s) 33, 90, 104, 118, 129, 169, 239, 302, 310
DdeI CTNAG 2 cut(s) 43, 99
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 99
EcoO109I RGGNCCY 2 cut(s) 31, 216
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 277
FaiI YATR 2 cut(s) 158, 275
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 88, 240
Fsp4HI GCNGC 2 cut(s) 88, 240
GluI GCNGC 2 cut(s) 88, 240
GsuI CTGGAG 2 cut(s) 6, 76
HaeIII GGCC 4 cut(s) 33, 104, 129, 302
HapII CCGG 1 cut(s) 66
Hin1II CATG 1 cut(s) 277
HinfI GANTC 2 cut(s) 279, 338
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 116, 292
HpyCH4V TGCA 2 cut(s) 242, 335
HpyF3I CTNAG 2 cut(s) 43, 99
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 1 cut(s) 255
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 25, 95
Lsp1109I GCAGC 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 257
MbiI CCGCTC 1 cut(s) 87
MboI GATC 1 cut(s) 255
MboII GAAGA 3 cut(s) 94, 241, 331
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 2 cut(s) 159, 196
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 2 cut(s) 288, 332
MnlI CCTC 4 cut(s) 44, 70, 94, 104
Mox20I TGGCCA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 356
MscI TGGCCA 1 cut(s) 129
MseI TTAA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
NdeII GATC 1 cut(s) 255
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 2 cut(s) 32, 91
NmuCI GTSAC 1 cut(s) 4
PciSI GCTCTTC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 89, 241
PleI GAGTC 2 cut(s) 287, 332
PpsI GAGTC 2 cut(s) 287, 332
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 32, 91
PspPI GGNCC 2 cut(s) 31, 216
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 88, 240
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 2 cut(s) 31, 216
SchI GAGTC 2 cut(s) 288, 332
ScrFI CCNGG 1 cut(s) 24
SetI ASST 6 cut(s) 28, 100, 127, 218, 241, 312
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 159, 196
SsiI CCGC 2 cut(s) 12, 87
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 164
TaqI TCGA 2 cut(s) 258, 282
TasI AATT 2 cut(s) 159, 196
TauI GCSGC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 112, 330
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 2 cut(s) 112, 330
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.