Rh2BG583200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006053
Physical Location & Seq
Forward (+)
79981067 .. 79981847
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG583200.1

Sequence Viewer

Length: 312 bp
ATGGTGACTGGCGGTGTTGCTCCAGGTTGGGGCCTCTCATTCTCAGGGTTCTCTGTTTCCTCTGCCGGAAATCTCAAGGCGAAGAGCGGCTCCAGACCTGAGGCCAGTGGAGGCGAGCCTGAAGGTAGTGCCGATAGACTCAACGCGGGCAGCGGCAAAAGAGTGGTTGGGGTGCCCTGCTTCTTGGGTGTCTTTAGTAATTGGGTCTGGGCTTACAGTTGGGCCTGGTTCTCAAGTCCTCTGGGTTTGGGTTATTGGGTTGGGCTAGGGTTCAAACATTGGAAGCTTAGGGCCATTGGACATGGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.75

Weight (kDa)

9.9

Isoelectric Point (pI)

17.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 172, 305
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 1 cut(s) 146
AciI CCGC 4 cut(s) 12, 87, 146, 153
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 2 cut(s) 22, 224
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
AoxI GGCC 4 cut(s) 31, 102, 222, 291
ApeKI GCWGC 1 cut(s) 150
AspS9I GGNCC 3 cut(s) 31, 222, 291
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 2 cut(s) 172, 305
BbvI GCAGC 1 cut(s) 162
BciT130I CCWGG 2 cut(s) 24, 226
BfaI CTAG 2 cut(s) 266, 310
BisI GCNGC 3 cut(s) 88, 151, 154
BlsI GCNGC 3 cut(s) 89, 152, 155
Bme1390I CCNGG 2 cut(s) 24, 226
BmgT120I GGNCC 3 cut(s) 31, 222, 291
BmiI GGNNCC 4 cut(s) 32, 91, 174, 307
BmrFI CCNGG 2 cut(s) 24, 226
BpmI CTGGAG 2 cut(s) 6, 76
Bpu10I CCTNAGC 1 cut(s) 287
BpuEI CTTGAG 2 cut(s) 59, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 13, 105
Bse21I CCTNAGG 1 cut(s) 99
BseBI CCWGG 2 cut(s) 24, 226
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 57, 90
BseNI ACTGG 2 cut(s) 13, 105
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 4 cut(s) 33, 104, 224, 293
BshNI GGYRCC 2 cut(s) 172, 305
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 4 cut(s) 33, 104, 224, 293
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 4 cut(s) 12, 87, 146, 153
BspANI GGCC 4 cut(s) 33, 104, 224, 293
BspCNI CTCAG 2 cut(s) 56, 91
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 4 cut(s) 32, 91, 174, 307
BspQI GCTCTTC 1 cut(s) 77
BspT107I GGYRCC 2 cut(s) 172, 305
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 2 cut(s) 13, 105
Bst2UI CCWGG 2 cut(s) 24, 226
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 116, 148
BstDEI CTNAG 3 cut(s) 43, 99, 287
BstFNI CGCG 1 cut(s) 146
BstNI CCWGG 2 cut(s) 24, 226
BstSCI CCNGG 2 cut(s) 22, 224
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 162
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 33, 104, 224, 293
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 116, 148
Cfr13I GGNCC 3 cut(s) 31, 222, 291
CviAII CATG 1 cut(s) 302
CviJI RGCY 9 cut(s) 33, 90, 104, 118, 212, 224, 265, 286, 293
CviKI_1 RGCY 9 cut(s) 33, 90, 104, 118, 212, 224, 265, 286, 293
DdeI CTNAG 3 cut(s) 43, 99, 287
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 22, 224
FaeI CATG 1 cut(s) 305
FaiI YATR 1 cut(s) 303
FatI CATG 1 cut(s) 301
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 88, 151, 154
Fsp4HI GCNGC 3 cut(s) 88, 151, 154
FspBI CTAG 2 cut(s) 266, 310
GluI GCNGC 3 cut(s) 88, 151, 154
GsuI CTGGAG 2 cut(s) 6, 76
HaeIII GGCC 4 cut(s) 33, 104, 224, 293
HapII CCGG 1 cut(s) 66
Hin1II CATG 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 43, 99, 287
Hsp92II CATG 1 cut(s) 305
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 25, 95
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 2 cut(s) 266, 310
MaeIII GTNAC 1 cut(s) 4
MbiI CCGCTC 1 cut(s) 87
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 199
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 5 cut(s) 44, 70, 94, 104, 249
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 24, 226
MvaI CCWGG 2 cut(s) 24, 226
MvnI CGCG 1 cut(s) 146
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 4 cut(s) 32, 91, 174, 307
NmuCI GTSAC 1 cut(s) 4
PciSI GCTCTTC 1 cut(s) 77
PkrI GCNGC 3 cut(s) 89, 152, 155
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 22, 224
PspGI CCWGG 2 cut(s) 22, 224
PspN4I GGNNCC 4 cut(s) 32, 91, 174, 307
PspPI GGNCC 3 cut(s) 31, 222, 291
SapI GCTCTTC 1 cut(s) 77
SatI GCNGC 3 cut(s) 88, 151, 154
Sau96I GGNCC 3 cut(s) 31, 222, 291
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 24, 226
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 28, 100, 127, 288, 311
SmlI CTYRAG 2 cut(s) 74, 232
SmoI CTYRAG 2 cut(s) 74, 232
Sse9I AATT 1 cut(s) 199
SsiI CCGC 4 cut(s) 12, 87, 146, 153
SspMI CTAG 2 cut(s) 266, 310
StyD4I CCNGG 2 cut(s) 22, 224
TaaI ACNGT 1 cut(s) 218
TasI AATT 1 cut(s) 199
TauI GCSGC 2 cut(s) 90, 156
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 4
TspRI CASTG 1 cut(s) 112
XspI CTAG 2 cut(s) 266, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.