FvH4_6g49730

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013704
Physical Location & Seq
Forward (+)
37186086 .. 37189828
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49730.t5

Sequence Viewer

Length: 1455 bp
ATGGACATTGAGAATCATAAATACAGAAAAAGGTTTAGAAAGTGGTTCAAAAGAAACCACAAGAAATATGACCCGTATCAACTCAGCCAAGTTTCAGATGGGGGTGAAGATGAAAGTGGTGATTACTTGGATGAGATTGTCACGCAGTCCGTGGAGATGGATCCATGTACTTCCACTAATGCGTTGAGAATTTTTGTGGGAACTTGGAATGTGGCTGGAAGGTCTCCCATAGGGAGCTTAGCAGAAGATTTGGAAGAGTGGCTGAATCTTAAGGATGCAGCAGACTTGTATGTTCTTGGGTTTCAAGAGATTGTACCTTTGAAGACACGCACTGTGATTGGAACAGAAGACCCAACTGAAGCAAGAAATTGGAACCTGTTGATAGGGAAAACTCTCAACAACAAACATGGCAGCCCTTGGTTCACATCCATATCGAACCCTACTTCAAGTGAAAACTACCAGTACGTGGACATGCCTGACCCTGAAAGCAGAAGAAGCGTTAGTAACCACACTGGGAGCCCCATTGTTGAGCAATATGAAATGCCAGAGGGTGGCAGTACGTACAAGCAAATGGCAAGCAAGAAGATGGTGGGAGTGTTCATTAGTGTATGGATAAAAAGTGAATTTCTCAGAAAGTATAGCATTTCAAATGTTAAAGTTTGTTCAGTGGCTTGTGGCATCATGGGTTATTTGGGAAATAAAGGCTCAGTTTCAGTCAGCATGACAATTGAAGGAACTAGTTTTTGCTTTGTTGTTGCCCATTTGGCTTCTGGCGAGAAGAAAGGAGATGAAGGCAGAAGGAATCACCAAGTCTCAGAGATTTTTAGGCGAACCACTTTCCCTCGATCTCCCAGCATCCCTACAGACAATCATACCTCCCACCCTCTCACCATCTTAGGACACGATCGGATATTCTGGTTTGGGGATCTCAACTATAGGCTATACTTGGAGGACAATTCAGCCAGGCAGCTGATAAACAAACTAGACTGGAGAGCATTACAAGAGTTCGATCAGCTTCGTAGGGAACGAGAATATGGTGGGGTATTTCAGGGATGGGAAGAGGGAGCTATAGAATTTGCACCTACCTACAAGTATTCTTCATCAAATTGCAACAGATACTCAGGTGGGATTCCAAGCAAATCAGGAGAGAAGCAAAGAACTCCAGCATGGTGCGACAGAATTCTATGGTATGGAAAAGGGGTGACTCAGCTCTCCTATTTCCGTAGCGAGAGTAAGTTCTCAGACCACAGGCCAGTCTCTGCCCTATTCTCAACACAGGTAGAAGTAGAGAAGTCAATTAATCCAAGAATGGTTTCACCGCGAACGATTCTTCCCAACATAACACTTCCTAAAGCAACTGAGCAGAGAAAACATGCTGAAAAGACCCAATCTACGTTGAAATCGTTCCTGGAAAAGGATATAGATGCATCACCACCACATAGAGCAAAAGGGTAG

Protein Analysis

485

Amino Acids

55.15

Weight (kDa)

8.65

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 67 - 421 4.6e-65 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis pycom111g03300 pycom17g03870
rosa_chinensis RchiOBHm_Chr2g0169761
rosa_laevigata RLG00000021900
rosa_multiflora Rmu_ssc0000389.1_g000029
rosa_roxburghii Rroxscaffold_2G00081810
rosa_rugosa Rorug02G0542900 Rorug02G0543000
rosa_samantha Rh2AG615000 Rh2DG638100
rosa_wichuraiana Rw2G050990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 466, 551
AccII CGCG 1 cut(s) 1321
AciI CCGC 1 cut(s) 1319
AclWI GGATC 3 cut(s) 155, 168, 933
AcsI RAATTY 4 cut(s) 189, 623, 1073, 1179
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 5 cut(s) 169, 315, 464, 559, 563
AfiI CCNNNNNNNGG 3 cut(s) 466, 551, 1414
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 7 cut(s) 49, 305, 322, 447, 648, 731, 1399
AhlI ACTAGT 1 cut(s) 737
AjnI CCWGG 2 cut(s) 962, 1407
AjuI GAANNNNNNNTTGG 2 cut(s) 1297, 1329
AloI GAACNNNNNNTCC 2 cut(s) 1315, 1347
AluBI AGCT 5 cut(s) 237, 970, 1015, 1067, 1210
AluI AGCT 5 cut(s) 237, 970, 1015, 1067, 1210
Alw26I GTCTC 3 cut(s) 228, 817, 1261
AlwI GGATC 3 cut(s) 155, 168, 933
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 1 cut(s) 1250
ApeKI GCWGC 3 cut(s) 278, 411, 967
ApoI RAATTY 4 cut(s) 189, 623, 1073, 1179
AseI ATTAAT 1 cut(s) 1299
Asp700I GAANNNNTTC 2 cut(s) 1312, 1403
AsuHPI GGTGA 7 cut(s) 116, 131, 797, 880, 1213, 1308, 1422
BaeI ACNNNNGTAYC 2 cut(s) 1108, 1141
BamHI GGATCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 329, 354
BbvI GCAGC 3 cut(s) 290, 423, 979
BccI CCATC 5 cut(s) 92, 151, 580, 899, 1047
BciT130I CCWGG 2 cut(s) 964, 1409
BcoDI GTCTC 3 cut(s) 228, 817, 1261
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 2 cut(s) 738, 983
BfmI CTRYAG 3 cut(s) 861, 934, 1068
BfrI CTTAAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 764
BisI GCNGC 3 cut(s) 279, 412, 968
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 3 cut(s) 280, 413, 969
Bme1390I CCNGG 2 cut(s) 964, 1409
BmiI GGNNCC 3 cut(s) 162, 374, 518
BmrFI CCNGG 2 cut(s) 964, 1409
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 5 cut(s) 265, 687, 864, 1414, 1436
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 329, 354
BpmI CTGGAG 2 cut(s) 1009, 1146
Bpu1102I GCTNAGC 1 cut(s) 238
BsaAI YACGTR 2 cut(s) 466, 561
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 150, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 551, 1414
Bse1I ACTGG 4 cut(s) 460, 517, 992, 1253
BseBI CCWGG 2 cut(s) 964, 1409
BseDI CCNNGG 2 cut(s) 150, 416
BseGI GGATG 5 cut(s) 136, 280, 425, 855, 1058
BseLI CCNNNNNNNGG 3 cut(s) 466, 551, 1414
BseMII CTCAG 8 cut(s) 97, 643, 720, 828, 1134, 1220, 1254, 1350
BseNI ACTGG 4 cut(s) 460, 517, 992, 1253
BseXI GCAGC 3 cut(s) 290, 423, 979
BseYI CCCAGC 1 cut(s) 851
Bsh1236I CGCG 1 cut(s) 1321
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 1 cut(s) 1252
BsiEI CGRYCG 1 cut(s) 907
BslI CCNNNNNNNGG 3 cut(s) 466, 551, 1414
BsmAI GTCTC 3 cut(s) 228, 817, 1261
BsnI GGCC 1 cut(s) 1252
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 5 cut(s) 160, 845, 904, 925, 1009
Bsp1720I GCTNAGC 1 cut(s) 238
BspACI CCGC 1 cut(s) 1319
BspANI GGCC 1 cut(s) 1252
BspCNI CTCAG 8 cut(s) 96, 642, 719, 827, 1133, 1219, 1253, 1351
BspFNI CGCG 1 cut(s) 1321
BspLI GGNNCC 3 cut(s) 162, 374, 518
BspPI GGATC 3 cut(s) 155, 168, 933
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 4 cut(s) 460, 517, 992, 1253
BssECI CCNNGG 2 cut(s) 150, 416
BssMI GATC 5 cut(s) 160, 845, 904, 925, 1009
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 964, 1409
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 249, 1053
BstAFI CTTAAG 1 cut(s) 269
BstBAI YACGTR 2 cut(s) 466, 561
BstC8I GCNNGC 1 cut(s) 577
BstDSI CCRYGG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 1412
BstF5I GGATG 5 cut(s) 136, 280, 425, 855, 1058
BstFNI CGCG 1 cut(s) 1321
BstKTI GATC 5 cut(s) 163, 848, 907, 928, 1012
BstMAI GTCTC 3 cut(s) 228, 817, 1261
BstMBI GATC 5 cut(s) 160, 845, 904, 925, 1009
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 2 cut(s) 495, 764
BstNI CCWGG 2 cut(s) 964, 1409
BstNSI RCATGY 2 cut(s) 475, 1376
BstSCI CCNGG 2 cut(s) 962, 1407
BstSFI CTRYAG 3 cut(s) 861, 934, 1068
BstSNI TACGTA 1 cut(s) 561
BstUI CGCG 1 cut(s) 1321
BstV1I GCAGC 3 cut(s) 290, 423, 979
BstV2I GAAGAC 2 cut(s) 329, 354
BstX2I RGATCY 2 cut(s) 160, 925
BstYI RGATCY 2 cut(s) 160, 925
BsuRI GGCC 1 cut(s) 1252
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 5 cut(s) 136, 280, 425, 855, 1058
BtsIMutI CAGTG 3 cut(s) 330, 510, 672
Cac8I GCNNGC 1 cut(s) 577
CaiI CAGNNNCTG 1 cut(s) 1259
Csp6I GTAC 5 cut(s) 168, 314, 463, 558, 562
CviAII CATG 7 cut(s) 165, 407, 472, 682, 721, 1167, 1373
CviQI GTAC 5 cut(s) 168, 314, 463, 558, 562
DpnI GATC 5 cut(s) 162, 847, 906, 927, 1011
DpnII GATC 5 cut(s) 160, 845, 904, 925, 1009
Eam1104I CTCTTC 2 cut(s) 249, 1053
EarI CTCTTC 2 cut(s) 249, 1053
Eco105I TACGTA 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 1412
EcoRI GAATTC 1 cut(s) 1179
EcoRII CCWGG 2 cut(s) 962, 1407
EcoT14I CCWWGG 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 1429
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 7 cut(s) 168, 410, 475, 685, 724, 1170, 1376
FatI CATG 7 cut(s) 164, 406, 471, 681, 720, 1166, 1372
Fnu4HI GCNGC 3 cut(s) 279, 412, 968
FokI GGATG 5 cut(s) 143, 287, 412, 842, 1065
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 3 cut(s) 279, 412, 968
FspBI CTAG 2 cut(s) 738, 983
GluI GCNGC 3 cut(s) 279, 412, 968
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 2 cut(s) 1009, 1146
HaeIII GGCC 1 cut(s) 1252
Hin1II CATG 7 cut(s) 168, 410, 475, 685, 724, 1170, 1376
HinfI GANTC 6 cut(s) 13, 265, 802, 1129, 1204, 1327
HphI GGTGA 7 cut(s) 116, 131, 797, 880, 1213, 1308, 1422
Hpy166II GTNNAC 2 cut(s) 423, 469
Hpy188I TCNGA 5 cut(s) 97, 632, 817, 909, 1243
Hpy188III TCNNGA 2 cut(s) 305, 1143
Hpy8I GTNNAC 2 cut(s) 423, 469
HpyAV CCTTC 4 cut(s) 213, 725, 785, 792
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 3 cut(s) 465, 560, 1394
HpyCH4V TGCA 4 cut(s) 278, 1079, 1110, 1427
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 764
HpySE526I ACGT 3 cut(s) 465, 560, 1394
Hsp92II CATG 7 cut(s) 168, 410, 475, 685, 724, 1170, 1376
Kzo9I GATC 5 cut(s) 160, 845, 904, 925, 1009
LmnI GCTCC 3 cut(s) 234, 516, 1064
Lsp1109I GCAGC 3 cut(s) 290, 423, 979
LweI GCATC 5 cut(s) 265, 687, 864, 1414, 1436
MaeI CTAG 2 cut(s) 738, 983
MaeII ACGT 3 cut(s) 465, 560, 1394
MaeIII GTNAC 3 cut(s) 139, 503, 1201
MalI GATC 5 cut(s) 162, 847, 906, 927, 1011
MboI GATC 5 cut(s) 160, 845, 904, 925, 1009
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 2 cut(s) 160, 925
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 9 cut(s) 189, 367, 623, 726, 955, 1073, 1105, 1179, 1296
MlyI GAGTC 1 cut(s) 1198
MnlI CCTC 6 cut(s) 541, 852, 886, 894, 943, 1054
Mph1103I ATGCAT 1 cut(s) 1429
MroXI GAANNNNTTC 2 cut(s) 1312, 1403
MseI TTAA 3 cut(s) 270, 654, 1299
MspA1I CMGCKG 1 cut(s) 970
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 964, 1409
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 2 cut(s) 964, 1409
MvnI CGCG 1 cut(s) 1321
MwoI GCNNNNNNNGC 2 cut(s) 495, 764
NdeII GATC 5 cut(s) 160, 845, 904, 925, 1009
NlaIII CATG 7 cut(s) 168, 410, 475, 685, 724, 1170, 1376
NlaIV GGNNCC 3 cut(s) 162, 374, 518
NmuCI GTSAC 2 cut(s) 139, 1201
NsiI ATGCAT 1 cut(s) 1429
NspI RCATGY 2 cut(s) 475, 1376
PcsI WCGNNNNNNNCGW 2 cut(s) 1024, 1400
PdmI GAANNNNTTC 2 cut(s) 1312, 1403
PfeI GAWTC 5 cut(s) 13, 265, 802, 1129, 1327
PflMI CCANNNNNTGG 2 cut(s) 466, 551
PfoI TCCNGGA 1 cut(s) 1407
PkrI GCNGC 3 cut(s) 280, 413, 969
Ple19I CGATCG 1 cut(s) 907
PleI GAGTC 1 cut(s) 1198
PpsI GAGTC 1 cut(s) 1198
Ppu21I YACGTR 2 cut(s) 466, 561
PshBI ATTAAT 1 cut(s) 1299
Psp6I CCWGG 2 cut(s) 962, 1407
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 962, 1407
PspN4I GGNNCC 3 cut(s) 162, 374, 518
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 2 cut(s) 160, 925
PvuI CGATCG 1 cut(s) 907
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 5 cut(s) 169, 315, 464, 559, 563
RsaNI GTAC 5 cut(s) 168, 314, 463, 558, 562
SaqAI TTAA 3 cut(s) 270, 654, 1299
SatI GCNGC 3 cut(s) 279, 412, 968
Sau3AI GATC 5 cut(s) 160, 845, 904, 925, 1009
SchI GAGTC 1 cut(s) 1198
ScrFI CCNGG 2 cut(s) 964, 1409
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 5 cut(s) 265, 687, 864, 1414, 1436
SfcI CTRYAG 3 cut(s) 861, 934, 1068
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SnaBI TACGTA 1 cut(s) 561
SpeI ACTAGT 1 cut(s) 737
Sse9I AATT 9 cut(s) 189, 367, 623, 726, 955, 1073, 1105, 1179, 1296
SsiI CCGC 1 cut(s) 1319
SspMI CTAG 2 cut(s) 738, 983
StyD4I CCNGG 2 cut(s) 962, 1407
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 3 cut(s) 468, 563, 1397
TaqI TCGA 3 cut(s) 434, 844, 1008
TasI AATT 9 cut(s) 189, 367, 623, 726, 955, 1073, 1105, 1179, 1296
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 5 cut(s) 13, 265, 802, 1129, 1327
Tru1I TTAA 3 cut(s) 270, 654, 1299
Tru9I TTAA 3 cut(s) 270, 654, 1299
TscAI CASTG 3 cut(s) 337, 517, 672
TseFI GTSAC 2 cut(s) 139, 1201
TseI GCWGC 3 cut(s) 278, 411, 967
Tsp45I GTSAC 2 cut(s) 139, 1201
TspDTI ATGAA 5 cut(s) 126, 552, 589, 804, 1089
TspGWI ACGGA 2 cut(s) 139, 1211
TspRI CASTG 3 cut(s) 337, 517, 672
Van91I CCANNNNNTGG 2 cut(s) 466, 551
Vha464I CTTAAG 1 cut(s) 269
VspI ATTAAT 1 cut(s) 1299
XagI CCTNNNNNAGG 1 cut(s) 1412
XapI RAATTY 4 cut(s) 189, 623, 1073, 1179
XceI RCATGY 2 cut(s) 475, 1376
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 767
XmnI GAANNNNTTC 2 cut(s) 1312, 1403
XspI CTAG 2 cut(s) 738, 983
Zsp2I ATGCAT 1 cut(s) 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.