Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013704

Physical Location & Seq

Genomic Coordinates Forward (+)

67235227 .. 67235769

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0543000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTAACCATTCGAGCAGATGAAATTAGTAATATTATCCGCGAACGTATTGAGCAATATAACCGAGAGGTAAAGATTTTAAATACGGGTACTGTACTTCAAGTGGGAGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTAGAATTTGAAGAAGGTACGATAGGCATTGCTCTGAATTTGGAATCAAATAATGTTGGTGTTGTATTAATGGGTGACGGTTTGATGATACAAGAGGGGAGTTCTGTAAAAGCAACGGGAAGAATTGCTCAGATCCCAGTAAGTGAGGCGTTTTTAGGTCGTGTTGTAAATGCACTGGCTAAACCTATTGATGGCCGGGGCGAAATTTCAGCCTCTGAATCTCGGTTAATTGAGTCTCCTGCTCCTGGTATTATTTCGAGACGTTCCGTATACGAGCCCCTTCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGCGGTCAGCGGGAATTGATTATTGGGGACAGACAGTGTCACGCCCCGAATTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

180

Amino Acids

19.44

Weight (kDa)

4.8

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab_N	PF02874	29 - 93	1.2e-18	ATP synthase alpha/beta family, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica	MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica	Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis	pycom111g03300 pycom17g03870
rosa_chinensis	RchiOBHm_Chr2g0169761
rosa_laevigata	RLG00000021900
rosa_multiflora	Rmu_ssc0000389.1_g000029
rosa_roxburghii	Rroxscaffold_2G00081810
rosa_rugosa	Rorug02G0542900 Rorug02G0543000
rosa_samantha	Rh2AG615000 Rh2DG638100
rosa_wichuraiana	Rw2G050990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	2 cut(s)	42, 486
AciI	CCGC	3 cut(s)	40, 486, 493
AclWI	GGATC	2 cut(s)	286, 466
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	4 cut(s)	164, 196, 363, 532
AfaI	GTAC	3 cut(s)	91, 96, 178
AfiI	CCNNNNNNNGG	2 cut(s)	350, 404
AgsI	TTSAA	4 cut(s)	101, 170, 443, 539
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
Alw26I	GTCTC	2 cut(s)	399, 412
AlwI	GGATC	2 cut(s)	286, 466
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	4 cut(s)	164, 196, 363, 532
AseI	ATTAAT	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	164, 245
BanII	GRGCYC	1 cut(s)	438
BccI	CCATC	2 cut(s)	104, 344
BciT130I	CCWGG	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	399, 412
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	356, 405
BmrFI	CCNGG	2 cut(s)	356, 405
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 404
Bse1I	ACTGG	2 cut(s)	296, 339
Bse3DI	GCAATG	2 cut(s)	114, 186
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	350, 404
BseMI	GCAATG	2 cut(s)	114, 186
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	296, 339
Bsh1236I	CGCG	2 cut(s)	42, 486
BshFI	GGCC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	350, 404
BsmAI	GTCTC	2 cut(s)	399, 412
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	291, 471
BspACI	CCGC	3 cut(s)	40, 486, 493
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	42, 486
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	286, 466
BsrDI	GCAATG	2 cut(s)	114, 186
BsrI	ACTGG	2 cut(s)	296, 339
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	291, 471
BssNAI	GTATAC	1 cut(s)	430
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	94, 239, 519
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	4
BstFNI	CGCG	2 cut(s)	42, 486
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	2 cut(s)	294, 474
BstMAI	GTCTC	2 cut(s)	399, 412
BstMBI	GATC	2 cut(s)	291, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	405
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	354, 403
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	2 cut(s)	42, 486
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BstZ17I	GTATAC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	332, 524
BveI	ACCTGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	90, 95, 177
CviJI	RGCY	4 cut(s)	338, 354, 371, 436
CviKI_1	RGCY	4 cut(s)	338, 354, 371, 436
CviQI	GTAC	3 cut(s)	90, 95, 177
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	293, 473
DpnII	GATC	2 cut(s)	291, 471
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	412
FaiI	YATR	4 cut(s)	60, 129, 430, 479
FaqI	GGGAC	1 cut(s)	524
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	429
FriOI	GRGCYC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	355
HhaI	GCGC	1 cut(s)	486
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	203, 377, 392, 464
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	164, 245
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	195, 291, 376
Hpy188III	TCNNGA	2 cut(s)	134, 417
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	167, 449
HpyCH4III	ACNGT	3 cut(s)	94, 239, 519
HpyCH4IV	ACGT	2 cut(s)	46, 421
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	46, 421
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	291, 471
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	8 cut(s)	135, 309, 320, 368, 390, 411, 417, 432
MaeII	ACGT	2 cut(s)	46, 421
MaeIII	GTNAC	3 cut(s)	4, 233, 521
MalI	GATC	2 cut(s)	293, 473
MboI	GATC	2 cut(s)	291, 471
MboII	GAAGA	2 cut(s)	182, 291
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	9 cut(s)	24, 155, 164, 196, 282, 363, 387, 497, 532
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	61, 247, 298, 382
MseI	TTAA	3 cut(s)	80, 227, 386
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	356, 405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	42, 486
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	291, 471
NmuCI	GTSAC	2 cut(s)	233, 521
PaqCI	CACCTGC	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	203, 377, 464
PflFI	GACNNNGTC	1 cut(s)	519
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	519
RsaI	GTAC	3 cut(s)	91, 96, 178
RsaNI	GTAC	3 cut(s)	90, 95, 177
SaqAI	TTAA	3 cut(s)	80, 227, 386
Sau3AI	GATC	2 cut(s)	291, 471
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	356, 405
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	7 cut(s)	49, 72, 154, 178, 319, 346, 424
SfcI	CTRYAG	1 cut(s)	477
Sse9I	AATT	9 cut(s)	24, 155, 164, 196, 282, 363, 387, 497, 532
SsiI	CCGC	3 cut(s)	40, 486, 493
SspI	AATATT	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	354, 403
TaaI	ACNGT	3 cut(s)	94, 239, 519
TaiI	ACGT	2 cut(s)	49, 424
TaqI	TCGA	3 cut(s)	13, 416, 467
TasI	AATT	9 cut(s)	24, 155, 164, 196, 282, 363, 387, 497, 532
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	3 cut(s)	203, 377, 464
Tru1I	TTAA	3 cut(s)	80, 227, 386
Tru9I	TTAA	3 cut(s)	80, 227, 386
TscAI	CASTG	2 cut(s)	339, 524
TseFI	GTSAC	2 cut(s)	233, 521
Tsp45I	GTSAC	2 cut(s)	233, 521
TspDTI	ATGAA	2 cut(s)	36, 153
TspGWI	ACGGA	1 cut(s)	415
TspRI	CASTG	2 cut(s)	339, 524
Tth111I	GACNNNGTC	1 cut(s)	519
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	4 cut(s)	164, 196, 363, 532
XmiI	GTMKAC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.