Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0013704

Physical Location & Seq

Genomic Coordinates Reverse (-)

1999657 .. 2002076

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTAGGAGGGGAACAGCTTTCATCTGATCAGCAAGGCGCAGGAGTATTACGGAATGGGGGCGAAGATGAAAGCGCAGATTACTTGGATGATATTCTCTTTCAGTCCATGGAGATGGATCCATGCACTTCAACTAGTGAGTTGAGGTCTCCCAGAGGGAGCTTGGCAGTAGATTTGGATGAGTGGTTGAATCTTAAGGACGCGGCAGACATGTATGTTCTCGGATTTCAGGAGATCGTACCTTTGAAGACCCGAAATGTGATAGGAGTGGAAGACCCAACCGAAGCAAGAAACTGGAACCTGCTGATAGGGAAAACTCTCAACGAAAAATTCGGATGCCCTTGGTCGACGCCCATTGTTCATCCAATTTCTAGTGAGAACTACAATTATGTGCAAGTTTCTGAACTCGAACCTGAAATCACGAGGGAGCAATCAAGAACCCTACAAGAAAAGCCAAAGAGTGTGAGTAAGTACAAGCTAATTGCAAGCAAGAAGATGGTTGGAGTCTTCATTAGTGTATGGATGAAAAGTGAATTGGTCAGAAAACATAACATTTCAAATGTTAAAGTTTGTTCCGTGGCCTGTGGCATCATGGGTTATTTGGGAAACAAAGGTTCGGTTTCAGTTAGCATGACAATCGAGAGAACTAGTTTTTGCTTTGTTGTTGCCCATTTAGCTTCTGGAGAGAAGAAAGGAGATGAAGGTAGAAGGAATCATCAAGTCGCAGAGATTTTTAAGCGAACGGCTTTCCCTCGATCCTCTTCAGACGACGATATTCGTCATCCTCTCACCATCTTAGGACACAAGCTATACTTGGAGGACAATTCAGCCAGGCAGATGATAAAGAAACTAGACTGGACAGCGTTGCAAGAATTTGATCAACTTCGTAGGGAACGAGAATATGGTGGGGTATTTCAGGGTTGGAAGGAGGGAGCTTTAGAATTTGCACCTACCTATAAGTATTCTTCATCAAATTGCAATCGCTATTCAGGTGGGCTTCCAGGCAGATCAGGAGAGAAGCAAAGGACTCCAGCATGGTGTGACAGAATTCTGTGGTATGGAAAAGGGGTGACGCAGCTCTCTTATTTCCGTAGTGAAAGTAAGTTCTCAGACCATCGGCCCGTCTCTGCCCTATTCTCAACACAGGTGCAGAGCAACTGTGATGAAGAGGCCAGTTCTACATTTTTATCATTGATCGTAAAGGATTTCGAAGAATCACCAACACAAAATGGAAGTTGTATAGAACAAATAGATGACAGTGGTTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

424

Amino Acids

47.48

Weight (kDa)

5.58

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica	MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica	Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis	pycom111g03300 pycom17g03870
rosa_chinensis	RchiOBHm_Chr2g0169761
rosa_laevigata	RLG00000021900
rosa_multiflora	Rmu_ssc0000389.1_g000029
rosa_roxburghii	Rroxscaffold_2G00081810
rosa_rugosa	Rorug02G0542900 Rorug02G0543000
rosa_samantha	Rh2AG615000 Rh2DG638100
rosa_wichuraiana	Rw2G050990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	3 cut(s)	113, 126, 750
AcsI	RAATTY	4 cut(s)	329, 872, 941, 1047
AcuI	CTGAAG	1 cut(s)	747
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	2 cut(s)	240, 473
AflII	CTTAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	132, 190, 247, 558
AhlI	ACTAGT	2 cut(s)	134, 647
AjnI	CCWGG	2 cut(s)	830, 1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	8 cut(s)	19, 162, 478, 677, 808, 935, 1078, 1269
AluI	AGCT	8 cut(s)	19, 162, 478, 677, 808, 935, 1078, 1269
Alw26I	GTCTC	2 cut(s)	153, 1129
AlwI	GGATC	3 cut(s)	113, 126, 750
AoxI	GGCC	3 cut(s)	579, 1118, 1170
ApeKI	GCWGC	2 cut(s)	1075, 1266
ApoI	RAATTY	4 cut(s)	329, 872, 941, 1047
AspLEI	GCGC	2 cut(s)	41, 77
AspS9I	GGNCC	1 cut(s)	1119
AsuHPI	GGTGA	3 cut(s)	781, 1081, 1209
AsuII	TTCGAA	1 cut(s)	1209
BamHI	GGATCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	421
BbsI	GAAGAC	3 cut(s)	254, 279, 499
BbvI	GCAGC	1 cut(s)	1087
BccI	CCATC	4 cut(s)	109, 490, 800, 1122
BceAI	ACGGC	1 cut(s)	759
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	2 cut(s)	832, 1002
BclI	TGATCA	2 cut(s)	28, 877
BcoDI	GTCTC	2 cut(s)	153, 1129
BcuI	ACTAGT	2 cut(s)	134, 647
BfaI	CTAG	5 cut(s)	135, 372, 648, 851, 1270
BfrI	CTTAAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	3 cut(s)	204, 1076, 1267
BlsI	GCNGC	3 cut(s)	205, 1077, 1268
Bme1390I	CCNGG	2 cut(s)	832, 1002
BmgT120I	GGNCC	1 cut(s)	1119
BmiI	GGNNCC	2 cut(s)	120, 299
BmrFI	CCNGG	2 cut(s)	832, 1002
BmsI	GCATC	2 cut(s)	326, 597
BpiI	GAAGAC	3 cut(s)	254, 279, 499
BpmI	CTGGAG	2 cut(s)	702, 1014
Bpu14I	TTCGAA	1 cut(s)	1209
BsaHI	GRCGYC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	108, 341, 576
Bse1I	ACTGG	3 cut(s)	299, 860, 1173
BseBI	CCWGG	2 cut(s)	832, 1002
BseDI	CCNNGG	3 cut(s)	108, 341, 576
BseGI	GGATG	6 cut(s)	94, 184, 341, 361, 528, 781
BseMII	CTCAG	1 cut(s)	1122
BseNI	ACTGG	3 cut(s)	299, 860, 1173
BseXI	GCAGC	1 cut(s)	1087
BsgI	GTGCAG	1 cut(s)	1169
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	581, 1120, 1172
BsmAI	GTCTC	2 cut(s)	153, 1129
BsmBI	CGTCTC	1 cut(s)	1129
BsnI	GGCC	3 cut(s)	581, 1120, 1172
Bso31I	GGTCTC	1 cut(s)	153
Bsp119I	TTCGAA	1 cut(s)	1209
Bsp143I	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	3 cut(s)	581, 1120, 1172
BspCNI	CTCAG	1 cut(s)	1121
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	120, 299
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	113, 126, 750
BspT104I	TTCGAA	1 cut(s)	1209
BspTI	CTTAAG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	153
BsrI	ACTGG	3 cut(s)	299, 860, 1173
BssECI	CCNNGG	3 cut(s)	108, 341, 576
BssMI	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
BssNI	GRCGYC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	108, 341
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	2 cut(s)	832, 1002
Bst4CI	ACNGT	2 cut(s)	1160, 1259
Bst6I	CTCTTC	2 cut(s)	766, 1161
BstACI	GRCGYC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	1209
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	2 cut(s)	796, 1108
BstDSI	CCRYGG	2 cut(s)	108, 576
BstF5I	GGATG	6 cut(s)	94, 184, 341, 361, 528, 781
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	41, 77
BstKTI	GATC	7 cut(s)	31, 121, 237, 758, 880, 1010, 1197
BstMAI	GTCTC	2 cut(s)	153, 1129
BstMBI	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	2 cut(s)	832, 1002
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	830, 1000
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	1087
BstV2I	GAAGAC	3 cut(s)	254, 279, 499
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	581, 1120, 1172
BtgI	CCRYGG	2 cut(s)	108, 576
BtsCI	GGATG	6 cut(s)	94, 184, 341, 361, 528, 781
BtsIMutI	CAGTG	1 cut(s)	1264
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	2 cut(s)	41, 77
Cfr13I	GGNCC	1 cut(s)	1119
CseI	GACGC	3 cut(s)	209, 358, 1081
Csp6I	GTAC	2 cut(s)	239, 472
CviAII	CATG	6 cut(s)	109, 123, 211, 592, 631, 1035
CviQI	GTAC	2 cut(s)	239, 472
DdeI	CTNAG	2 cut(s)	796, 1108
DpnI	GATC	7 cut(s)	30, 120, 236, 757, 879, 1009, 1196
DpnII	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
Eam1104I	CTCTTC	2 cut(s)	766, 1161
EarI	CTCTTC	2 cut(s)	766, 1161
Eco130I	CCWWGG	2 cut(s)	108, 341
Eco31I	GGTCTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	747
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	830, 1000
EcoT14I	CCWWGG	2 cut(s)	108, 341
ErhI	CCWWGG	2 cut(s)	108, 341
Esp3I	CGTCTC	1 cut(s)	1129
FaeI	CATG	6 cut(s)	112, 126, 214, 595, 634, 1038
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	6 cut(s)	108, 122, 210, 591, 630, 1034
FbaI	TGATCA	2 cut(s)	28, 877
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	3 cut(s)	204, 1076, 1267
FokI	GGATG	6 cut(s)	101, 191, 348, 348, 535, 768
Fsp4HI	GCNGC	3 cut(s)	204, 1076, 1267
FspBI	CTAG	5 cut(s)	135, 372, 648, 851, 1270
GlaI	GCGC	2 cut(s)	40, 76
GluI	GCNGC	3 cut(s)	204, 1076, 1267
GsuI	CTGGAG	2 cut(s)	702, 1014
HaeIII	GGCC	3 cut(s)	581, 1120, 1172
HgaI	GACGC	3 cut(s)	209, 358, 1081
HhaI	GCGC	2 cut(s)	41, 77
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	6 cut(s)	112, 126, 214, 595, 634, 1038
Hin6I	GCGC	2 cut(s)	39, 75
HinP1I	GCGC	2 cut(s)	39, 75
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	5 cut(s)	190, 504, 712, 1027, 1214
HphI	GGTGA	3 cut(s)	781, 1081, 1209
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	7 cut(s)	28, 224, 335, 403, 542, 766, 1111
Hpy188III	TCNNGA	6 cut(s)	230, 421, 435, 640, 681, 1011
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	2 cut(s)	352, 773
HpyAV	CCTTC	3 cut(s)	695, 702, 919
HpyCH4III	ACNGT	2 cut(s)	1160, 1259
HpyCH4V	TGCA	8 cut(s)	126, 394, 485, 868, 947, 978, 1150, 1266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	2 cut(s)	796, 1108
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	6 cut(s)	112, 126, 214, 595, 634, 1038
HspAI	GCGC	2 cut(s)	39, 75
Ksp22I	TGATCA	2 cut(s)	28, 877
Kzo9I	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
LmnI	GCTCC	3 cut(s)	159, 427, 932
Lsp1109I	GCAGC	1 cut(s)	1087
LweI	GCATC	2 cut(s)	326, 597
MaeI	CTAG	5 cut(s)	135, 372, 648, 851, 1270
MaeIII	GTNAC	2 cut(s)	1040, 1069
MalI	GATC	7 cut(s)	30, 120, 236, 757, 879, 1009, 1196
MboI	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
MflI	RGATCY	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	513, 1021
MmeI	TCCRAC	2 cut(s)	481, 902
MnlI	CCTC	9 cut(s)	138, 149, 417, 762, 769, 795, 811, 922, 1162
MseI	TTAA	3 cut(s)	195, 564, 735
MslI	CAYNNNNRTG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	832, 1002
MvaI	CCWGG	2 cut(s)	832, 1002
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	674
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
NlaIII	CATG	6 cut(s)	112, 126, 214, 595, 634, 1038
NlaIV	GGNNCC	2 cut(s)	120, 299
NmuCI	GTSAC	2 cut(s)	1040, 1069
NspI	RCATGY	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	1209
PciI	ACATGT	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PfeI	GAWTC	3 cut(s)	190, 712, 1214
PkrI	GCNGC	3 cut(s)	205, 1077, 1268
PleI	GAGTC	2 cut(s)	512, 1021
PpsI	GAGTC	2 cut(s)	512, 1021
PscI	ACATGT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	830, 1000
PspGI	CCWGG	2 cut(s)	830, 1000
PspN4I	GGNNCC	2 cut(s)	120, 299
PspPI	GGNCC	1 cut(s)	1119
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	240, 473
RsaNI	GTAC	2 cut(s)	239, 472
RseI	CAYNNNNRTG	1 cut(s)	113
SalI	GTCGAC	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	195, 564, 735
SatI	GCNGC	3 cut(s)	204, 1076, 1267
Sau3AI	GATC	7 cut(s)	28, 118, 234, 755, 877, 1007, 1194
Sau96I	GGNCC	1 cut(s)	1119
SchI	GAGTC	2 cut(s)	513, 1021
ScrFI	CCNGG	2 cut(s)	832, 1002
SfaNI	GCATC	2 cut(s)	326, 597
SfuI	TTCGAA	1 cut(s)	1209
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	2 cut(s)	134, 647
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	5 cut(s)	135, 372, 648, 851, 1270
StyD4I	CCNGG	2 cut(s)	830, 1000
StyI	CCWWGG	2 cut(s)	108, 341
TaaI	ACNGT	2 cut(s)	1160, 1259
TaqI	TCGA	5 cut(s)	347, 408, 639, 754, 1209
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	190, 712, 1214
Tru1I	TTAA	3 cut(s)	195, 564, 735
Tru9I	TTAA	3 cut(s)	195, 564, 735
TscAI	CASTG	1 cut(s)	1264
TseFI	GTSAC	2 cut(s)	1040, 1069
TseI	GCWGC	2 cut(s)	1075, 1266
Tsp45I	GTSAC	2 cut(s)	1040, 1069
TspDTI	ATGAA	8 cut(s)	12, 84, 350, 499, 539, 714, 957, 1179
TspGWI	ACGGA	3 cut(s)	67, 565, 1079
TspRI	CASTG	1 cut(s)	1264
Vha464I	CTTAAG	1 cut(s)	194
XapI	RAATTY	4 cut(s)	329, 872, 941, 1047
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	2 cut(s)	160, 677
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	5 cut(s)	135, 372, 648, 851, 1270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.