MD17G1043400.v1.1

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013704
Physical Location & Seq
Reverse (-)
3177180 .. 3178213
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1043400.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGAACGGGAATATGGTGGGGCATTTCAGGGTTGGATGGAGGGAGCTTTAGAATTTGCACCTACCTATAAGTATTCTTCATCAAACTGCAATCGCTATTCAGGTGGGCTTCCAAGCAGATCAGGAGAGAAGCAAAGGACTCCAGCATGGTGCGATAGAATTATGTGGTATGGAAAAGGAGTGACACAGCTCTCTTATTTCCGTAGTGAAAGTAAGTTCTCTGACCATCGCCCTGTCTCTGCCCTATTCGCAACACAGGTAGACGTACTGCAATCTACTAATCCAAGAATGGTTTCAATTCATACCGTTCTTCCCATCATACCAACTCTTAAAGAAATTGTACAGAGAGACCATGACGAAGAGGCCAGTTCTACATTATTATCAATGATCTTAAAGGATATAGAAGAATCACCAGCAGGAAATGCAAGTTGTATAGAACAAATAGATGACAGTGGTTGCAGCTAG

Protein Analysis

155

Amino Acids

17.21

Weight (kDa)

5.19

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 2 - 81 3.3e-19 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis pycom111g03300 pycom17g03870
rosa_chinensis RchiOBHm_Chr2g0169761
rosa_laevigata RLG00000021900
rosa_multiflora Rmu_ssc0000389.1_g000029
rosa_roxburghii Rroxscaffold_2G00081810
rosa_rugosa Rorug02G0542900 Rorug02G0543000
rosa_samantha Rh2AG615000 Rh2DG638100
rosa_wichuraiana Rw2G050990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 2 cut(s) 267, 342
AgsI TTSAA 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 277, 309
AluBI AGCT 3 cut(s) 47, 190, 462
AluI AGCT 3 cut(s) 47, 190, 462
Alw26I GTCTC 2 cut(s) 241, 342
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 459
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 402
BccI CCATC 3 cut(s) 31, 234, 323
BcoDI GTCTC 2 cut(s) 241, 342
BfaI CTAG 1 cut(s) 463
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
BpmI CTGGAG 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 366
BshFI GGCC 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 241, 342
BsnI GGCC 1 cut(s) 365
Bso31I GGTCTC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 119, 387
BspANI GGCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 342
BsrGI TGTACA 1 cut(s) 340
BsrI ACTGG 1 cut(s) 366
BssMI GATC 2 cut(s) 119, 387
Bst4CI ACNGT 2 cut(s) 307, 452
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 340
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 122, 390
BstMAI GTCTC 2 cut(s) 241, 342
BstMBI GATC 2 cut(s) 119, 387
BstMWI GCNNNNNNNGC 2 cut(s) 248, 422
BsuRI GGCC 1 cut(s) 365
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 457
Csp6I GTAC 2 cut(s) 266, 341
CviAII CATG 2 cut(s) 147, 353
CviJI RGCY 5 cut(s) 47, 109, 190, 365, 462
CviKI_1 RGCY 5 cut(s) 47, 109, 190, 365, 462
CviQI GTAC 2 cut(s) 266, 341
DpnI GATC 2 cut(s) 121, 389
DpnII GATC 2 cut(s) 119, 387
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 342
FaeI CATG 2 cut(s) 150, 356
FatI CATG 2 cut(s) 146, 352
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 1 cut(s) 463
GluI GCNGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 365
Hin1II CATG 2 cut(s) 150, 356
HinfI GANTC 2 cut(s) 139, 407
HphI GGTGA 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 307, 452
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 5 cut(s) 59, 90, 271, 425, 459
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 422
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 150, 356
Kzo9I GATC 2 cut(s) 119, 387
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 9 cut(s) 14, 87, 108, 156, 242, 246, 379, 402, 426
MaeI CTAG 1 cut(s) 463
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 121, 389
MboI GATC 2 cut(s) 119, 387
MboII GAAGA 4 cut(s) 69, 302, 371, 416
MluCI AATT 4 cut(s) 53, 159, 297, 336
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 2 cut(s) 34, 355
MroXI GAANNNNTTC 1 cut(s) 292
MseI TTAA 2 cut(s) 330, 392
MwoI GCNNNNNNNGC 2 cut(s) 248, 422
NdeII GATC 2 cut(s) 119, 387
NlaIII CATG 2 cut(s) 150, 356
NmuCI GTSAC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 461
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
RsaI GTAC 2 cut(s) 267, 342
RsaNI GTAC 2 cut(s) 266, 341
SaqAI TTAA 2 cut(s) 330, 392
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 2 cut(s) 119, 387
SchI GAGTC 1 cut(s) 133
SetI ASST 8 cut(s) 49, 64, 68, 106, 192, 261, 267, 464
Sse9I AATT 4 cut(s) 53, 159, 297, 336
SspMI CTAG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 307, 452
TaiI ACGT 1 cut(s) 267
TasI AATT 4 cut(s) 53, 159, 297, 336
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 330, 392
Tru9I TTAA 2 cut(s) 330, 392
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 69, 290
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 457
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.