Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013704

Physical Location & Seq

Genomic Coordinates Reverse (-)

2732807 .. 2735701

Gene Structure 2895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1042100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGAGATGGATCCATGCACTTCAACTAGTGAGTTGAGAATCTTTGTGGGAACTTGGAATGTTGCTGGAAGGTCTCCCAAAGGGAGCTTGGCAGTAGATTTGGATGAGTGGTTGAATCTTAAGGACGCGGCAGACATGTATGTTCTCGGATTTCAGGAGATCGTACCTTTGAAGACCCGAAATGTGATAGGAGTGGAAGACCCAACCGAAGCAAGAAACTGGAACCTGCTGATAGGGAAAACTCTCAACGAAAAATTCGGGTGCCCTTGGTTGACGCCCATTGTGCATCCAATTTCTAGTGAGAACTACAATTATGTGCAAGTTTCTGAACTCGAACCTGAAATCACGAGGGAGCAATCAAGAACCCTACAAGAAAAGCCAAAGAGTGTGAGTAAGTACAAGCTAATTGCAAGCAAGAAGATGGTTGGAGTCTTCCTTAGTGTATGGATGAAAAGTGAATTGGTCAGAAAATATGACATTTCAAATGTTAAAGTTTGTTCCGTGGCCTGTGGCATCATGGGTTATTTGGGAAACAAAGGTTCGGTTTCAGTTAGCATGACAATCGAAAGAACTAGTTTTTGCTTTGTTGTTGCCCATTTAGCTTCTGGAGAGAAGAAAGGAGATGAAGGTAGAAGGAATCATCAAGTCGCAGAGATTTTTAAGCGAACGGCTTTCCCTCGATCCTCTTCAGACAATGATATTCCTCATCCTCTCACCATCTTAGGACACGATCGGATTTTCTGGTTCGGGGATCTCAACTATAGGCTATACTTGGAGGACAATTCAGCCAGGCAGCTGATAAGGAAACTAGACTGGACAGCGTTGCAAGAATTTGATCAACTTCGTAGGGAACGAGAATATGGTGGGGTATTTCAGGGTTGGAAGGAGGGAGCTTTAGAATTTGCACCTACCTATAAGTATTCTTCATCAAATTGCAATCGCTATTCAGGTGGGCTTCCAAGCAGATCAGGAGAGAAGCAAAGGACTCCAGCATGGTGTGATAGAATTCTGTGGTATGGAAAAGGGGTGACACAGCTCTCTTATTTCCGGAGTGAAAGTAAGTTCTCAGACCATCGGCCCGTCTCTGCCCTATTCTCAACACAGGTAGATGTAGTGCAGTCTACTAATCCAAGAATGGTTTCAATGCATACCATTCTTCCCGCCATACCAACTCCTAAAGAAATTGTGCAGAGCAACCGTGATGAAGAGGCCAGTTCTACATTTTTATCATTGATCATAAAGGATTTCAAAGAATCACCAACACAAAATACAAGTTGTATAGAACAAATAGATGACAGTGGTTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

437

Amino Acids

49.42

Weight (kDa)

7.54

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	17 - 363	2.5e-66	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica	MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica	Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis	pycom111g03300 pycom17g03870
rosa_chinensis	RchiOBHm_Chr2g0169761
rosa_laevigata	RLG00000021900
rosa_multiflora	Rmu_ssc0000389.1_g000029
rosa_roxburghii	Rroxscaffold_2G00081810
rosa_rugosa	Rorug02G0542900 Rorug02G0543000
rosa_samantha	Rh2AG615000 Rh2DG638100
rosa_wichuraiana	Rw2G050990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	1121
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	1047
AciI	CCGC	2 cut(s)	128, 1161
AclWI	GGATC	4 cut(s)	5, 18, 675, 759
AcsI	RAATTY	4 cut(s)	254, 830, 899, 1005
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	165, 398
AflII	CTTAAG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	6 cut(s)	24, 115, 172, 483, 1143, 1249
AhlI	ACTAGT	2 cut(s)	26, 572
AjnI	CCWGG	1 cut(s)	788
AjuI	GAANNNNNNNTTGG	4 cut(s)	443, 475, 1123, 1155
AluBI	AGCT	7 cut(s)	87, 403, 602, 796, 893, 1036, 1308
AluI	AGCT	7 cut(s)	87, 403, 602, 796, 893, 1036, 1308
Alw26I	GTCTC	2 cut(s)	78, 1087
AlwI	GGATC	4 cut(s)	5, 18, 675, 759
Aor13HI	TCCGGA	1 cut(s)	1047
AoxI	GGCC	3 cut(s)	504, 1076, 1209
ApeKI	GCWGC	2 cut(s)	793, 1305
ApoI	RAATTY	4 cut(s)	254, 830, 899, 1005
Asp700I	GAANNNNTTC	1 cut(s)	1138
AspS9I	GGNCC	1 cut(s)	1077
AsuHPI	GGTGA	3 cut(s)	706, 1039, 1248
BaeGI	GKGCMC	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	346
BbsI	GAAGAC	3 cut(s)	179, 204, 424
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	3 cut(s)	415, 725, 1080
BceAI	ACGGC	1 cut(s)	684
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	1 cut(s)	790
BclI	TGATCA	2 cut(s)	835, 1233
BcoDI	GTCTC	2 cut(s)	78, 1087
BcuI	ACTAGT	2 cut(s)	26, 572
BfaI	CTAG	5 cut(s)	27, 297, 573, 809, 1309
BfmI	CTRYAG	1 cut(s)	760
BfrI	CTTAAG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	129, 794, 1306
BlsI	GCNGC	3 cut(s)	130, 795, 1307
Bme1390I	CCNGG	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	1077
BmiI	GGNNCC	3 cut(s)	12, 224, 263
BmrFI	CCNGG	1 cut(s)	790
BmsI	GCATC	2 cut(s)	295, 522
BpiI	GAAGAC	3 cut(s)	179, 204, 424
BpmI	CTGGAG	2 cut(s)	627, 972
BsaHI	GRCGYC	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	266, 501
BsaWI	WCCGGW	1 cut(s)	1047
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bse1I	ACTGG	3 cut(s)	224, 818, 1212
BseAI	TCCGGA	1 cut(s)	1047
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	2 cut(s)	266, 501
BseGI	GGATG	4 cut(s)	109, 286, 453, 706
BseMII	CTCAG	1 cut(s)	1080
BseNI	ACTGG	3 cut(s)	224, 818, 1212
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	805
BsgI	GTGCAG	2 cut(s)	1136, 1208
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	733
BshFI	GGCC	3 cut(s)	506, 1078, 1211
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	1048
BsmAI	GTCTC	2 cut(s)	78, 1087
BsmBI	CGTCTC	1 cut(s)	1087
BsnI	GGCC	3 cut(s)	506, 1078, 1211
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	1047
Bsp143I	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
BspACI	CCGC	2 cut(s)	128, 1161
BspANI	GGCC	3 cut(s)	506, 1078, 1211
BspCNI	CTCAG	1 cut(s)	1079
BspEI	TCCGGA	1 cut(s)	1047
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	12, 224, 263
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	4 cut(s)	5, 18, 675, 759
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	224, 818, 1212
BssECI	CCNNGG	2 cut(s)	266, 501
BssMI	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
BssNI	GRCGYC	1 cut(s)	275
BssSI	CACGAG	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	2 cut(s)	1199, 1298
Bst6I	CTCTTC	2 cut(s)	691, 1200
BstACI	GRCGYC	1 cut(s)	275
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	437, 721, 1066
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	4 cut(s)	109, 286, 453, 706
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	8 cut(s)	13, 162, 683, 733, 754, 838, 968, 1236
BstMAI	GTCTC	2 cut(s)	78, 1087
BstMBI	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
BstMCI	CGRYCG	1 cut(s)	733
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 599
BstNI	CCWGG	1 cut(s)	790
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	788
BstSFI	CTRYAG	1 cut(s)	760
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	805
BstV2I	GAAGAC	3 cut(s)	179, 204, 424
BstX2I	RGATCY	2 cut(s)	10, 751
BstYI	RGATCY	2 cut(s)	10, 751
BsuRI	GGCC	3 cut(s)	506, 1078, 1211
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	4 cut(s)	109, 286, 453, 706
BtsIMutI	CAGTG	1 cut(s)	1303
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	1077
CseI	GACGC	2 cut(s)	134, 283
Csp6I	GTAC	2 cut(s)	164, 397
CviAII	CATG	5 cut(s)	15, 136, 517, 556, 993
CviQI	GTAC	2 cut(s)	164, 397
DdeI	CTNAG	3 cut(s)	437, 721, 1066
DpnI	GATC	8 cut(s)	12, 161, 682, 732, 753, 837, 967, 1235
DpnII	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
Eam1104I	CTCTTC	2 cut(s)	691, 1200
EarI	CTCTTC	2 cut(s)	691, 1200
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	1005
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	1149
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	1087
FaeI	CATG	5 cut(s)	18, 139, 520, 559, 996
FatI	CATG	5 cut(s)	14, 135, 516, 555, 992
FauI	CCCGC	1 cut(s)	1168
FbaI	TGATCA	2 cut(s)	835, 1233
FblI	GTMKAC	1 cut(s)	1121
Fnu4HI	GCNGC	3 cut(s)	129, 794, 1306
FokI	GGATG	4 cut(s)	116, 273, 460, 693
Fsp4HI	GCNGC	3 cut(s)	129, 794, 1306
FspBI	CTAG	5 cut(s)	27, 297, 573, 809, 1309
GluI	GCNGC	3 cut(s)	129, 794, 1306
GsuI	CTGGAG	2 cut(s)	627, 972
HaeIII	GGCC	3 cut(s)	506, 1078, 1211
HapII	CCGG	1 cut(s)	1048
HgaI	GACGC	2 cut(s)	134, 283
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	5 cut(s)	18, 139, 520, 559, 996
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	6 cut(s)	39, 115, 429, 637, 985, 1253
HpaII	CCGG	1 cut(s)	1048
HphI	GGTGA	3 cut(s)	706, 1039, 1248
Hpy166II	GTNNAC	2 cut(s)	273, 1122
Hpy188I	TCNGA	6 cut(s)	149, 328, 467, 691, 735, 1069
Hpy188III	TCNNGA	6 cut(s)	155, 346, 360, 606, 969, 1048
Hpy8I	GTNNAC	2 cut(s)	273, 1122
HpyAV	CCTTC	4 cut(s)	63, 620, 627, 877
HpyCH4III	ACNGT	2 cut(s)	1199, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 599
HpyF3I	CTNAG	3 cut(s)	437, 721, 1066
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	5 cut(s)	18, 139, 520, 559, 996
Kpn2I	TCCGGA	1 cut(s)	1047
Ksp22I	TGATCA	2 cut(s)	835, 1233
Kzo9I	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
LmnI	GCTCC	3 cut(s)	84, 352, 890
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	2 cut(s)	295, 522
MaeI	CTAG	5 cut(s)	27, 297, 573, 809, 1309
MaeIII	GTNAC	1 cut(s)	1027
MalI	GATC	8 cut(s)	12, 161, 682, 732, 753, 837, 967, 1235
MboI	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
MboII	GAAGA	9 cut(s)	184, 209, 424, 430, 625, 678, 915, 1148, 1217
MflI	RGATCY	2 cut(s)	10, 751
MhlI	GDGCHC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	438, 979
MmeI	TCCRAC	2 cut(s)	406, 860
MnlI	CCTC	8 cut(s)	342, 687, 694, 714, 720, 769, 880, 1201
Mph1103I	ATGCAT	1 cut(s)	1149
MroI	TCCGGA	1 cut(s)	1047
MroXI	GAANNNNTTC	1 cut(s)	1138
MseI	TTAA	3 cut(s)	120, 489, 660
MspA1I	CMGCKG	1 cut(s)	796
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	1 cut(s)	1048
MspR9I	CCNGG	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	790
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	283, 599
NdeII	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
NlaIII	CATG	5 cut(s)	18, 139, 520, 559, 996
NlaIV	GGNNCC	3 cut(s)	12, 224, 263
NmuCI	GTSAC	1 cut(s)	1027
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	1 cut(s)	139
PciI	ACATGT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PdmI	GAANNNNTTC	1 cut(s)	1138
PfeI	GAWTC	4 cut(s)	39, 115, 637, 1253
PkrI	GCNGC	3 cut(s)	130, 795, 1307
Ple19I	CGATCG	1 cut(s)	733
PleI	GAGTC	2 cut(s)	437, 979
PpsI	GAGTC	2 cut(s)	437, 979
PscI	ACATGT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	12, 224, 263
PspPI	GGNCC	1 cut(s)	1077
PsuI	RGATCY	2 cut(s)	10, 751
PvuI	CGATCG	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	796
RsaI	GTAC	2 cut(s)	165, 398
RsaNI	GTAC	2 cut(s)	164, 397
SaqAI	TTAA	3 cut(s)	120, 489, 660
SatI	GCNGC	3 cut(s)	129, 794, 1306
Sau3AI	GATC	8 cut(s)	10, 159, 680, 730, 751, 835, 965, 1233
Sau96I	GGNCC	1 cut(s)	1077
SchI	GAGTC	2 cut(s)	438, 979
ScrFI	CCNGG	1 cut(s)	790
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	295, 522
SfcI	CTRYAG	1 cut(s)	760
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	2 cut(s)	26, 572
SsiI	CCGC	2 cut(s)	128, 1161
SspMI	CTAG	5 cut(s)	27, 297, 573, 809, 1309
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	1199, 1298
TaqI	TCGA	3 cut(s)	333, 564, 679
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	4 cut(s)	39, 115, 637, 1253
Tru1I	TTAA	3 cut(s)	120, 489, 660
Tru9I	TTAA	3 cut(s)	120, 489, 660
TscAI	CASTG	1 cut(s)	1303
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	2 cut(s)	793, 1305
Tsp45I	GTSAC	1 cut(s)	1027
TspDTI	ATGAA	4 cut(s)	464, 639, 915, 1218
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	1 cut(s)	1303
Vha464I	CTTAAG	1 cut(s)	119
XapI	RAATTY	4 cut(s)	254, 830, 899, 1005
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 602
XmiI	GTMKAC	1 cut(s)	1121
XmnI	GAANNNNTTC	1 cut(s)	1138
XspI	CTAG	5 cut(s)	27, 297, 573, 809, 1309
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.