RchiOBHm_Chr2g0169761

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013704
Physical Location & Seq
Forward (+)
83908721 .. 83912335
3615 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53733

Sequence Viewer

Length: 1455 bp
ATGGACACTCAGAATCATAAATCCAGAAAAAGGTTTAGAAAGTGGTTCAAAAGAAAGCACAAGAAATATGACCCATATCAACTGAGCCAAGTTTCAGATGGGGGTGAAGATCAAAGTGATGATTACTTAGATGAGATTGTCACGCAGTCCATGGAGATGGGTTCGCACACTTCTACTAATGAGTTGAGAATCTTTGTGGGAACTTGGAATGTGGCTGGAAGGTCTCCCATAGGGAGCTTAGCAGTAGATTTGGAGGAGTGGCTGAATCTTAAGGATGCAGCAGACTTGTATGTTCTTGGGTTTCAAGAGATTGTACCTTTGAAGACACGAACTGTGATAGGAACAGAAGACCCAACTGAAGCAAGAAATTGGAACCTGTTGATAGAGAAAACTCTCAACAACAAACATGGCAGCCCTTGGTTCACATCCATATCGAACCCTATTTCAAGTGAAAACTACCAGTATGTGGATATGCCTGACCCTGAAAGCACAAAAAGCGTTAGCAACCATACTGGGAGCCCCATTGTAGAGCAATATGAAATGCCAAAGGGTGTCAGTAAGTACAACCTAATGGCAAGCAAGAAGATGGTTGGAGTATTCATTAGTGTATGGATAAAAAGTGAATTGCTTAGAAAGTTTTGCATTTCAGATGTTAAAGTTTGTTCAGTGGCCTGCGGTATCATGGGTTATTTGGGAAATAAAGGTTCAGTTTCAGTCAGCATGACAATCGAAGGAACTAGTTTTTGCTTTGTTGTTGCCCATTTGGCTTCTGGCGAGAAGAAAGGAGATGAAGGCAGAAGGAATCACCAAGTCTCAGAGATTTTTAGGCGAACCACTTTCCCTCGATCTCCCAGCATCCCTACAGACAATCATATTTCCCACCCCCTCACCATCTTAGGACACGATCGGATATTCTGGTTTGGCGATCTCAACTATAGGTTATACTTGGAGGACAATTTAGCCAGGCAGCTGATAAACAAACTAGACTGGCGAGCATTACAAGAGTTCGATCAGCTTCGTAGGGAACGTGAATATGGTGGGGTATTTCAGGGATGGGAAGAGGGAGCAATAGAATTTGCACCTACATACAAGTATTCTTCATCAAATTGCAATAGATACTCAGGTGGGCTTCCAAGCAAATCAGGAGAGAAGCAAAGAACTCCAGCATGGTGCGACAGAATTCTATGGTATGGAAAAGGGGTGACACAGCTCTCCTATTTCCGTAGCGAGAGTAAGTTCTCTGACCACAGGCCAGTCTCTGCCCTATTCTCAACACAGGTAGAAGTAGAGAAGTCTACTAATCCTAGAATGGTTTCACTGCAAACGATTCTTCCCACCATAACACTTCCTAAAGCAACTGAGCAGAGCAACCATGCTGATAGGACCCAATCTACATTGCTATCATTCCTGGTGGAGGATATAGAAGCATCACCAACACATAAAGCAAAAGGGTAA

Protein Analysis

484

Amino Acids

55.05

Weight (kDa)

8.07

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 67 - 138 4.2e-06 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 183 - 421 9.7e-58 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis pycom111g03300 pycom17g03870
rosa_chinensis RchiOBHm_Chr2g0169761
rosa_laevigata RLG00000021900
rosa_multiflora Rmu_ssc0000389.1_g000029
rosa_roxburghii Rroxscaffold_2G00081810
rosa_rugosa Rorug02G0542900 Rorug02G0543000
rosa_samantha Rh2AG615000 Rh2DG638100
rosa_wichuraiana Rw2G050990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 1 cut(s) 1295
AciI CCGC 1 cut(s) 675
AcsI RAATTY 2 cut(s) 1073, 1179
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 315, 563
AfiI CCNNNNNNNGG 3 cut(s) 30, 466, 1414
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 49, 305, 322, 447
AhlI ACTAGT 1 cut(s) 737
AjnI CCWGG 2 cut(s) 962, 1407
AluBI AGCT 4 cut(s) 237, 970, 1015, 1210
AluI AGCT 4 cut(s) 237, 970, 1015, 1210
Alw26I GTCTC 3 cut(s) 228, 817, 1261
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 2 cut(s) 669, 1250
ApeKI GCWGC 3 cut(s) 278, 411, 967
ApoI RAATTY 2 cut(s) 1073, 1179
Asp700I GAANNNNTTC 1 cut(s) 1312
AspS9I GGNCC 1 cut(s) 1383
AsuHPI GGTGA 5 cut(s) 116, 797, 880, 1213, 1422
AvaII GGWCC 1 cut(s) 1383
BaeI ACNNNNGTAYC 2 cut(s) 1108, 1141
BanII GRGCYC 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 329, 354
BbvI GCAGC 3 cut(s) 290, 423, 979
BccI CCATC 5 cut(s) 92, 151, 580, 899, 1047
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 2 cut(s) 964, 1409
BcoDI GTCTC 3 cut(s) 228, 817, 1261
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 3 cut(s) 738, 983, 1305
BfmI CTRYAG 2 cut(s) 861, 934
BfrI CTTAAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 764
BisI GCNGC 3 cut(s) 279, 412, 968
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 3 cut(s) 280, 413, 969
Bme1390I CCNGG 2 cut(s) 964, 1409
Bme18I GGWCC 1 cut(s) 1383
BmgT120I GGNCC 1 cut(s) 1383
BmiI GGNNCC 3 cut(s) 374, 518, 1385
BmrFI CCNGG 2 cut(s) 964, 1409
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 265, 864, 1436
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 329, 354
BpmI CTGGAG 1 cut(s) 1146
Bpu1102I GCTNAGC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 150, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 466, 1414
Bse1I ACTGG 4 cut(s) 460, 517, 992, 1253
Bse3DI GCAATG 1 cut(s) 1394
BseBI CCWGG 2 cut(s) 964, 1409
BseDI CCNNGG 2 cut(s) 150, 416
BseGI GGATG 4 cut(s) 280, 425, 855, 1058
BseLI CCNNNNNNNGG 3 cut(s) 30, 466, 1414
BseMI GCAATG 1 cut(s) 1394
BseMII CTCAG 5 cut(s) 23, 74, 828, 1134, 1350
BseNI ACTGG 4 cut(s) 460, 517, 992, 1253
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 3 cut(s) 290, 423, 979
BseYI CCCAGC 1 cut(s) 851
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 2 cut(s) 671, 1252
BsiEI CGRYCG 1 cut(s) 907
BslI CCNNNNNNNGG 3 cut(s) 30, 466, 1414
BsmAI GTCTC 3 cut(s) 228, 817, 1261
BsnI GGCC 2 cut(s) 671, 1252
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 5 cut(s) 109, 845, 904, 925, 1009
Bsp1720I GCTNAGC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 675
BspANI GGCC 2 cut(s) 671, 1252
BspCNI CTCAG 5 cut(s) 22, 75, 827, 1133, 1351
BspLI GGNNCC 3 cut(s) 374, 518, 1385
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 1394
BsrI ACTGG 4 cut(s) 460, 517, 992, 1253
BssECI CCNNGG 2 cut(s) 150, 416
BssMI GATC 5 cut(s) 109, 845, 904, 925, 1009
BssT1I CCWWGG 2 cut(s) 150, 416
Bst2UI CCWGG 2 cut(s) 964, 1409
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 1053
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 577, 673, 993
BstDEI CTNAG 9 cut(s) 9, 83, 127, 238, 629, 814, 895, 1120, 1359
BstDSI CCRYGG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 1412
BstF5I GGATG 4 cut(s) 280, 425, 855, 1058
BstKTI GATC 5 cut(s) 112, 848, 907, 928, 1012
BstMAI GTCTC 3 cut(s) 228, 817, 1261
BstMBI GATC 5 cut(s) 109, 845, 904, 925, 1009
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 2 cut(s) 495, 764
BstNI CCWGG 2 cut(s) 964, 1409
BstSCI CCNGG 2 cut(s) 962, 1407
BstSFI CTRYAG 2 cut(s) 861, 934
BstV1I GCAGC 3 cut(s) 290, 423, 979
BstV2I GAAGAC 2 cut(s) 329, 354
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 671, 1252
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 4 cut(s) 280, 425, 855, 1058
BtsI GCAGTG 1 cut(s) 1316
BtsIMutI CAGTG 2 cut(s) 672, 1316
Cac8I GCNNGC 3 cut(s) 577, 673, 993
CaiI CAGNNNCTG 1 cut(s) 1259
Cfr13I GGNCC 1 cut(s) 1383
Csp6I GTAC 2 cut(s) 314, 562
CviAII CATG 6 cut(s) 151, 407, 682, 721, 1167, 1373
CviQI GTAC 2 cut(s) 314, 562
DdeI CTNAG 9 cut(s) 9, 83, 127, 238, 629, 814, 895, 1120, 1359
DpnI GATC 5 cut(s) 111, 847, 906, 927, 1011
DpnII GATC 5 cut(s) 109, 845, 904, 925, 1009
Eam1104I CTCTTC 1 cut(s) 1053
EarI CTCTTC 1 cut(s) 1053
Eco130I CCWWGG 2 cut(s) 150, 416
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 1383
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 1412
EcoO109I RGGNCCY 1 cut(s) 1383
EcoRI GAATTC 1 cut(s) 1179
EcoRII CCWGG 2 cut(s) 962, 1407
EcoT14I CCWWGG 2 cut(s) 150, 416
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 2 cut(s) 150, 416
FaeI CATG 6 cut(s) 154, 410, 685, 724, 1170, 1376
FatI CATG 6 cut(s) 150, 406, 681, 720, 1166, 1372
FblI GTMKAC 1 cut(s) 1295
Fnu4HI GCNGC 3 cut(s) 279, 412, 968
FokI GGATG 4 cut(s) 287, 412, 842, 1065
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 3 cut(s) 279, 412, 968
FspBI CTAG 3 cut(s) 738, 983, 1305
GluI GCNGC 3 cut(s) 279, 412, 968
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 2 cut(s) 671, 1252
Hin1II CATG 6 cut(s) 154, 410, 685, 724, 1170, 1376
HinfI GANTC 5 cut(s) 13, 189, 265, 802, 1327
HphI GGTGA 5 cut(s) 116, 797, 880, 1213, 1422
Hpy166II GTNNAC 2 cut(s) 423, 1296
Hpy188I TCNGA 6 cut(s) 12, 97, 649, 817, 909, 1243
Hpy188III TCNNGA 3 cut(s) 24, 305, 1143
Hpy8I GTNNAC 2 cut(s) 423, 1296
HpyAV CCTTC 4 cut(s) 213, 725, 785, 792
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 1027
HpyCH4V TGCA 5 cut(s) 278, 642, 1079, 1110, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 764
HpyF3I CTNAG 9 cut(s) 9, 83, 127, 238, 629, 814, 895, 1120, 1359
HpySE526I ACGT 1 cut(s) 1027
Hsp92II CATG 6 cut(s) 154, 410, 685, 724, 1170, 1376
Kzo9I GATC 5 cut(s) 109, 845, 904, 925, 1009
LmnI GCTCC 3 cut(s) 234, 516, 1064
Lsp1109I GCAGC 3 cut(s) 290, 423, 979
LweI GCATC 3 cut(s) 265, 864, 1436
MaeI CTAG 3 cut(s) 738, 983, 1305
MaeII ACGT 1 cut(s) 1027
MaeIII GTNAC 2 cut(s) 139, 1201
MalI GATC 5 cut(s) 111, 847, 906, 927, 1011
MboI GATC 5 cut(s) 109, 845, 904, 925, 1009
MboII GAAGA 8 cut(s) 119, 334, 359, 595, 790, 1070, 1089, 1322
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 6 cut(s) 367, 623, 955, 1073, 1105, 1179
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 6 cut(s) 247, 852, 896, 943, 1054, 1408
MroXI GAANNNNTTC 1 cut(s) 1312
MseI TTAA 2 cut(s) 270, 654
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 970
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 964, 1409
MvaI CCWGG 2 cut(s) 964, 1409
MwoI GCNNNNNNNGC 2 cut(s) 495, 764
NcoI CCATGG 1 cut(s) 150
NdeII GATC 5 cut(s) 109, 845, 904, 925, 1009
NlaIII CATG 6 cut(s) 154, 410, 685, 724, 1170, 1376
NlaIV GGNNCC 3 cut(s) 374, 518, 1385
NmuCI GTSAC 2 cut(s) 139, 1201
PcsI WCGNNNNNNNCGW 1 cut(s) 1024
PdmI GAANNNNTTC 1 cut(s) 1312
PfeI GAWTC 5 cut(s) 13, 189, 265, 802, 1327
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 3 cut(s) 280, 413, 969
Ple19I CGATCG 1 cut(s) 907
PpuMI RGGWCCY 1 cut(s) 1383
Psp5II RGGWCCY 1 cut(s) 1383
Psp6I CCWGG 2 cut(s) 962, 1407
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 962, 1407
PspN4I GGNNCC 3 cut(s) 374, 518, 1385
PspPI GGNCC 1 cut(s) 1383
PspPPI RGGWCCY 1 cut(s) 1383
PstNI CAGNNNCTG 1 cut(s) 1259
PvuI CGATCG 1 cut(s) 907
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 2 cut(s) 315, 563
RsaNI GTAC 2 cut(s) 314, 562
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 270, 654
SatI GCNGC 3 cut(s) 279, 412, 968
Sau3AI GATC 5 cut(s) 109, 845, 904, 925, 1009
Sau96I GGNCC 1 cut(s) 1383
ScrFI CCNGG 2 cut(s) 964, 1409
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 3 cut(s) 265, 864, 1436
SfcI CTRYAG 2 cut(s) 861, 934
SinI GGWCC 1 cut(s) 1383
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SpeI ACTAGT 1 cut(s) 737
Sse9I AATT 6 cut(s) 367, 623, 955, 1073, 1105, 1179
SsiI CCGC 1 cut(s) 675
SspMI CTAG 3 cut(s) 738, 983, 1305
StyD4I CCNGG 2 cut(s) 962, 1407
StyI CCWWGG 2 cut(s) 150, 416
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 4 cut(s) 434, 729, 844, 1008
TasI AATT 6 cut(s) 367, 623, 955, 1073, 1105, 1179
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 5 cut(s) 13, 189, 265, 802, 1327
Tru1I TTAA 2 cut(s) 270, 654
Tru9I TTAA 2 cut(s) 270, 654
TscAI CASTG 2 cut(s) 672, 1323
TseFI GTSAC 2 cut(s) 139, 1201
TseI GCWGC 3 cut(s) 278, 411, 967
Tsp45I GTSAC 2 cut(s) 139, 1201
TspDTI ATGAA 4 cut(s) 552, 589, 804, 1089
TspGWI ACGGA 1 cut(s) 1211
TspRI CASTG 2 cut(s) 672, 1323
Van91I CCANNNNNTGG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 1383
XagI CCTNNNNNAGG 1 cut(s) 1412
XapI RAATTY 2 cut(s) 1073, 1179
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 767
XmiI GTMKAC 1 cut(s) 1295
XmnI GAANNNNTTC 1 cut(s) 1312
XspI CTAG 3 cut(s) 738, 983, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.