Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013704

Physical Location & Seq

Genomic Coordinates Forward (+)

25400228 .. 25402827

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G275700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGACAGCGAGAATCATAATCCAAGAAGACGGTTCAGAAAGTGGTTCAAGGGAAAGCACAAGAGAGCTGACCATAATCAACTGAGTCAAGTTTCAGATGGGGGTGAAGACGAAAGTGAAGATTACTTGGATGATATTCTCTTTCAGTCCATGGAAATGGATCCATGCACTTCAACAATTGAGTTGAGAGTCTTTGTGGGGACTTGGAATGTTGCTGGAAAGTCTCCCATAGGAAGCTTGGCGGTGGATTTGGATGAGTGGCTGAATCTTAAGGATGCGGCAGACATGTATGTTCTTGGATTTCAGGAGATTGTGCCTTTGAAGACCCGAAATGTAATTGGAGCCGAAGACCCAACCGAAGCAAGAAATTGGAACCTGCTGATAGGGAAAACTCTCAACAACGATATGGAGCAATCAAGAAGCCAACATGAAAACCCAAAGGGGGTCAGCAAGTACAAGCTAATGGCAAGCAAGAAGATGGTAGGAGTGTTCATTAGTGTGTGGATGAAAAGTGACTTGGTCAGCAAGTATTACATTTCAAATGTTAAAGTTTGTTCAGTGGCCTGTGGCATCATGGGTTATTTGGGAAACAAAGGTTCGGTTTCAGTGAGCATGACAATCGAAGGAACTAGTTTCTGCTTTGTTGTTGCCCATTTGGCTTCCGGTGAGAAGAAAGGAGATGAAGGCAGAAGGAACCATCAAGTCTCAGAGATTTTTAGGCGAACGTCCTTCCCTCGATCTCCTGCAGATGATGATATCCCTCATCCTCTCACCATCTTAGGACACGATCGGATATTCTGGTTTGGGGATCTCAACTATAGGCTATACTTGGAGGACAATTCAGCCAGGCAGCTGATAAAGAAACTAGACTGGAGAGCACTGCAAGAGTTTGATCAGCTTCGTAGGGAACGAGAATATGGTGGGGTATTTCAGGGATGGGATGAGGGAGCTATAGAATTTGCACCAACCTACAAGTATTCTTCATCCAATTGCAATCGCTACTCAGGTGGGGTTCCAAGCAGATCAGGAGAGAAGCAAAGGACTCCAGCATGGTGTGATAGAATTCTGTGGTACGGAAAGGGGTTGACACAGCTTTCCTACTTCCGTAGCGAGAGTAAGTTCTCTGACCATCGGCCCGTCTCTGCCCTCTTCTCTACACAGGTAGAAGTAGTGAACTCTACTAATCCAAGAGTGGTTTCAAGGCATACCATTCTTCCCACCATACCACCTCCTGTTGAAACCGAGCAGAGCAACCATGATGAGGCCGAATCTACATTGATATCATTGATCATAAAGGATTTAGAAGCATCACCAACACATAATACAAGATGTATAGAACAAATAGATGACAGTGATTGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

455

Amino Acids

51.6

Weight (kDa)

6.0

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica	MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica	Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis	pycom111g03300 pycom17g03870
rosa_chinensis	RchiOBHm_Chr2g0169761
rosa_laevigata	RLG00000021900
rosa_multiflora	Rmu_ssc0000389.1_g000029
rosa_roxburghii	Rroxscaffold_2G00081810
rosa_rugosa	Rorug02G0542900 Rorug02G0543000
rosa_samantha	Rh2AG615000 Rh2DG638100
rosa_wichuraiana	Rw2G050990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AciI	CCGC	2 cut(s)	242, 278
AclWI	GGATC	3 cut(s)	155, 168, 816
AcsI	RAATTY	2 cut(s)	956, 1062
AfaI	GTAC	2 cut(s)	455, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	442, 1261
AflII	CTTAAG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	49, 174, 322, 540, 1200, 1238
AhlI	ACTAGT	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	845
AjuI	GAANNNNNNNTTGG	4 cut(s)	500, 532, 1180, 1212
AluBI	AGCT	8 cut(s)	68, 237, 460, 853, 898, 950, 1093, 1362
AluI	AGCT	8 cut(s)	68, 237, 460, 853, 898, 950, 1093, 1362
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	3 cut(s)	228, 709, 1144
AlwI	GGATC	3 cut(s)	155, 168, 816
AoxI	GGCC	3 cut(s)	561, 1133, 1263
ApeKI	GCWGC	2 cut(s)	850, 1359
ApoI	RAATTY	2 cut(s)	956, 1062
AspS9I	GGNCC	1 cut(s)	1134
AsuHPI	GGTGA	4 cut(s)	116, 677, 763, 1302
BamHI	GGATCC	1 cut(s)	160
BbsI	GAAGAC	4 cut(s)	34, 114, 329, 354
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	6 cut(s)	92, 472, 705, 782, 930, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciT130I	CCWGG	1 cut(s)	847
BclI	TGATCA	2 cut(s)	892, 1287
BcoDI	GTCTC	3 cut(s)	228, 709, 1144
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	3 cut(s)	630, 866, 1363
BfmI	CTRYAG	3 cut(s)	744, 817, 951
BfrI	CTTAAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	656
BisI	GCNGC	3 cut(s)	279, 851, 1360
BlsI	GCNGC	3 cut(s)	280, 852, 1361
Bme1390I	CCNGG	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	1134
BmiI	GGNNCC	5 cut(s)	162, 343, 374, 695, 1014
BmrFI	CCNGG	1 cut(s)	847
BmsI	GCATC	3 cut(s)	265, 579, 1316
BpiI	GAAGAC	4 cut(s)	34, 114, 329, 354
BpmI	CTGGAG	2 cut(s)	892, 1029
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 1261
Bse1I	ACTGG	1 cut(s)	875
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	8 cut(s)	136, 259, 280, 510, 763, 941, 946, 983
BseLI	CCNNNNNNNGG	2 cut(s)	442, 1261
BseMII	CTCAG	3 cut(s)	74, 720, 1017
BseNI	ACTGG	1 cut(s)	875
BseXI	GCAGC	1 cut(s)	862
Bsh1285I	CGRYCG	1 cut(s)	790
BshFI	GGCC	3 cut(s)	563, 1135, 1265
BsiEI	CGRYCG	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	442, 1261
BsmAI	GTCTC	3 cut(s)	228, 709, 1144
BsmBI	CGTCTC	1 cut(s)	1144
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	563, 1135, 1265
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp143I	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	242, 278
BspANI	GGCC	3 cut(s)	563, 1135, 1265
BspCNI	CTCAG	3 cut(s)	75, 719, 1016
BspLI	GGNNCC	5 cut(s)	162, 343, 374, 695, 1014
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	155, 168, 816
BspTI	CTTAAG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	875
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	2 cut(s)	33, 1352
Bst6I	CTCTTC	1 cut(s)	1154
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	83, 706, 778, 1003
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	8 cut(s)	136, 259, 280, 510, 763, 941, 946, 983
BstKTI	GATC	7 cut(s)	163, 740, 790, 811, 895, 1025, 1290
BstMAI	GTCTC	3 cut(s)	228, 709, 1144
BstMBI	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
BstMCI	CGRYCG	1 cut(s)	790
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstNI	CCWGG	1 cut(s)	847
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	845
BstSFI	CTRYAG	3 cut(s)	744, 817, 951
BstV1I	GCAGC	1 cut(s)	862
BstV2I	GAAGAC	4 cut(s)	34, 114, 329, 354
BstX2I	RGATCY	2 cut(s)	160, 808
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	160, 808
BsuRI	GGCC	3 cut(s)	563, 1135, 1265
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	8 cut(s)	136, 259, 280, 510, 763, 941, 946, 983
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	4 cut(s)	564, 612, 878, 1357
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	1134
Csp6I	GTAC	2 cut(s)	454, 1072
CviAII	CATG	8 cut(s)	151, 165, 286, 428, 574, 613, 1050, 1256
CviQI	GTAC	2 cut(s)	454, 1072
DdeI	CTNAG	4 cut(s)	83, 706, 778, 1003
DpnI	GATC	7 cut(s)	162, 739, 789, 810, 894, 1024, 1289
DpnII	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
Eam1104I	CTCTTC	1 cut(s)	1154
EarI	CTCTTC	1 cut(s)	1154
Eco130I	CCWWGG	1 cut(s)	150
Eco32I	GATATC	2 cut(s)	757, 1281
EcoRI	GAATTC	1 cut(s)	1062
EcoRII	CCWGG	1 cut(s)	845
EcoRV	GATATC	2 cut(s)	757, 1281
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	1144
FaeI	CATG	8 cut(s)	154, 168, 289, 431, 577, 616, 1053, 1259
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	8 cut(s)	150, 164, 285, 427, 573, 612, 1049, 1255
FbaI	TGATCA	2 cut(s)	892, 1287
Fnu4HI	GCNGC	3 cut(s)	279, 851, 1360
FokI	GGATG	8 cut(s)	143, 266, 287, 517, 750, 948, 953, 970
Fsp4HI	GCNGC	3 cut(s)	279, 851, 1360
FspBI	CTAG	3 cut(s)	630, 866, 1363
GluI	GCNGC	3 cut(s)	279, 851, 1360
GsuI	CTGGAG	2 cut(s)	892, 1029
HaeIII	GGCC	3 cut(s)	563, 1135, 1265
HapII	CCGG	1 cut(s)	663
Hin1II	CATG	8 cut(s)	154, 168, 289, 431, 577, 616, 1053, 1259
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	6 cut(s)	13, 85, 189, 265, 1042, 1268
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	4 cut(s)	116, 677, 763, 1302
Hpy166II	GTNNAC	2 cut(s)	1086, 1174
Hpy188I	TCNGA	5 cut(s)	38, 97, 709, 792, 1126
Hpy188III	TCNNGA	3 cut(s)	305, 417, 1026
Hpy8I	GTNNAC	2 cut(s)	1086, 1174
HpyAV	CCTTC	4 cut(s)	617, 677, 684, 739
HpyCH4III	ACNGT	2 cut(s)	33, 1352
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	6 cut(s)	168, 746, 883, 962, 993, 1359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	4 cut(s)	83, 706, 778, 1003
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	8 cut(s)	154, 168, 289, 431, 577, 616, 1053, 1259
Ksp22I	TGATCA	2 cut(s)	892, 1287
Kzo9I	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
LmnI	GCTCC	3 cut(s)	341, 409, 947
Lsp1109I	GCAGC	1 cut(s)	862
LweI	GCATC	3 cut(s)	265, 579, 1316
MaeI	CTAG	3 cut(s)	630, 866, 1363
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	7 cut(s)	162, 739, 789, 810, 894, 1024, 1289
MboI	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
MfeI	CAATTG	2 cut(s)	177, 988
MflI	RGATCY	2 cut(s)	160, 808
MhlI	GDGCHC	1 cut(s)	880
MluCI	AATT	7 cut(s)	177, 336, 367, 838, 956, 988, 1062
MlyI	GAGTC	3 cut(s)	94, 198, 1036
MnlI	CCTC	8 cut(s)	744, 771, 777, 826, 937, 1157, 1239, 1255
MseI	TTAA	2 cut(s)	270, 546
MslI	CAYNNNNRTG	2 cut(s)	155, 497
MspA1I	CMGCKG	1 cut(s)	853
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	847
MunI	CAATTG	2 cut(s)	177, 988
MvaI	CCWGG	1 cut(s)	847
MwoI	GCNNNNNNNGC	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
NlaIII	CATG	8 cut(s)	154, 168, 289, 431, 577, 616, 1053, 1259
NlaIV	GGNNCC	5 cut(s)	162, 343, 374, 695, 1014
NmuCI	GTSAC	1 cut(s)	512
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	907
PfeI	GAWTC	3 cut(s)	13, 265, 1268
PflFI	GACNNNGTC	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	280, 852, 1361
Ple19I	CGATCG	1 cut(s)	790
PleI	GAGTC	3 cut(s)	93, 197, 1036
PpsI	GAGTC	3 cut(s)	93, 197, 1036
PscI	ACATGT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	5 cut(s)	162, 343, 374, 695, 1014
PspPI	GGNCC	1 cut(s)	1134
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	2 cut(s)	160, 808
PsyI	GACNNNGTC	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	790
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	2 cut(s)	455, 1073
RsaNI	GTAC	2 cut(s)	454, 1072
RseI	CAYNNNNRTG	2 cut(s)	155, 497
SaqAI	TTAA	2 cut(s)	270, 546
SatI	GCNGC	3 cut(s)	279, 851, 1360
Sau3AI	GATC	7 cut(s)	160, 737, 787, 808, 892, 1022, 1287
Sau96I	GGNCC	1 cut(s)	1134
SchI	GAGTC	3 cut(s)	94, 198, 1036
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	1 cut(s)	880
SfaNI	GCATC	3 cut(s)	265, 579, 1316
SfcI	CTRYAG	3 cut(s)	744, 817, 951
SmiMI	CAYNNNNRTG	2 cut(s)	155, 497
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	7 cut(s)	177, 336, 367, 838, 956, 988, 1062
SsiI	CCGC	2 cut(s)	242, 278
SspMI	CTAG	3 cut(s)	630, 866, 1363
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	33, 1352
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	2 cut(s)	621, 736
TasI	AATT	7 cut(s)	177, 336, 367, 838, 956, 988, 1062
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	13, 265, 1268
Tru1I	TTAA	2 cut(s)	270, 546
Tru9I	TTAA	2 cut(s)	270, 546
TscAI	CASTG	4 cut(s)	564, 612, 885, 1357
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	2 cut(s)	850, 1359
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	5 cut(s)	444, 481, 521, 696, 972
TspGWI	ACGGA	2 cut(s)	1089, 1094
TspRI	CASTG	4 cut(s)	564, 612, 885, 1357
Tth111I	GACNNNGTC	1 cut(s)	518
Vha464I	CTTAAG	1 cut(s)	269
XapI	RAATTY	2 cut(s)	956, 1062
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XspI	CTAG	3 cut(s)	630, 866, 1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.