pycom17g03870

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013704
Physical Location & Seq
Reverse (-)
2645831 .. 2648420
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g03870.4

Sequence Viewer

Length: 1557 bp
ATGTTTTCTCTCCTTTGTTTGCCGCCGGATCTGTATTTTCCCTCGGCTTCTTGTGCTTGTCTGTTTCTACGCTTTCAAATCCTTGCGAATACGGGTTACACGATGATCTTACAGCTAAATCCGCGTTTTGTTTTCGTGTCCAGAGCAATGCGACTTGAAGCCGCCATGGTAGGAGGGGAACAGCTTTCATCTGATCAGCTAGGTGCAGGAACAGCTTGCATGGACAACGAAAGACGGGATAATGGGGGTAAAGATGAAAGCGGAGATTACTTGGATGATATTCTCTTTCAGTCCATGGAGATGGATCCACGCACGTCAACTGGCGAGCTGAGGTCTCCAGTAGGGAGCTTGGCAGTAGATTTGGATGAGTGGCTGAATCTTAAGGATGATGCGGCAGACATGTATGTTCTCGGATTTCAGGAGATCGTACCTTTGAAGGCCCGAAATGTGATAGGAGCGGAAGACCCAACCGAAGCAAGAAACTGGAACCTGCTGATAGGAAAAGCTCTCAACAAAAAACTCGGTTGCCCTTGGTTGACGCCCATTGTGAATCCAATTTCAAGTGAGAACTACCACTACATGCAAGTTTCTGAACCCGAACCTGAAATCACGAGAGAGCAATCAAGAACCGAACATGAAAAGCCAGAGAGTGTGAGTAAGTACAAGCTGATGGCAAGCAAGAAGATGGTTGGAGTCTTCATTACTGTATGGATGAAAAGTGAATTGGTCAAAAAATATAAAATTTCAAATGTTAAAGTTTGTTCCGTGGCCTGCGGCATCATGGGTTATTTGGGAAACAAAGGCTCAGTTTCAGTTAGCATGACGATTGAAGGAACTAGATTTTGCTTCGTTGTAGCCCATCTAGCTTCTGGTGAGAAGAAAGGAGATGAAGGCAGAAGGAATCATCAAGTCACAGAGATTTTCAAGCGAACTTCTTTCCCTCGATCCCCTTTAGACAACGATATTCCTCATCCTCTCACCATCTTAGGACACGATCAGATTTTTTGGTTCGGGGATCTAAACTATAGGCTATACTTGGAGGACAATTCAGCCAGGCAGCTGATAAGGAAACTAGACTGGAGAGCGTTGCAAGAGTTTGATCAGCTTCGTATGGAACGAGAATATGGTGGGGTATTTCAGGGTTGGATGGAGGGAGCTTTAGAATTTGCACCAACCTATAAGTATTCTTCATCAAACTGCAATCGCTATTCAGGTGGGCTTCCAAGCAGATCAGGAGAGAAGCAAAGGACTCCAGCATGGTGCGATAGAATTATGTGGTACGGAAAAGGAGTGACGCAGCTCTCTTATTTCCGTAGTGAAAGTAAGTTCTCTGACCATCGCCCTGTCTCTGCCCTATTCTCAACACAGGTAGACGTACTGCAATCTACTAATCCAAGAATGGTTTCAATGCATACCATTCTTCCCGTCATACCAACTCTTAAAGAAATAGTAAGTTCTAACAGTGTACAGAGAGACCGTGACGAAGAGGCCAGGTCTACATTATTATCAATGATCTTAAAGGATATAGAAGAATCACCAACAGGAAATGCAAGTTGA

Protein Analysis

519

Amino Acids

58.54

Weight (kDa)

6.01

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis pycom111g03300 pycom17g03870
rosa_chinensis RchiOBHm_Chr2g0169761
rosa_laevigata RLG00000021900
rosa_multiflora Rmu_ssc0000389.1_g000029
rosa_roxburghii Rroxscaffold_2G00081810
rosa_rugosa Rorug02G0542900 Rorug02G0543000
rosa_samantha Rh2AG615000 Rh2DG638100
rosa_wichuraiana Rw2G050990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 458
AccI GTMKAC 2 cut(s) 1371, 1496
AccII CGCG 1 cut(s) 124
AciI CCGC 7 cut(s) 23, 122, 162, 261, 392, 458, 774
AclWI GGATC 5 cut(s) 36, 299, 312, 939, 1023
AcsI RAATTY 2 cut(s) 741, 1163
AcyI GRCGYC 1 cut(s) 539
AfaI GTAC 5 cut(s) 429, 662, 1280, 1377, 1467
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 8 cut(s) 77, 158, 436, 561, 747, 830, 925, 1407
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 1052, 1490
AjuI GAANNNNNNNTTGG 4 cut(s) 707, 739, 1387, 1419
Alw26I GTCTC 3 cut(s) 339, 1351, 1467
AlwI GGATC 5 cut(s) 36, 299, 312, 939, 1023
AoxI GGCC 3 cut(s) 438, 768, 1488
ApeKI GCWGC 2 cut(s) 1057, 1297
ApoI RAATTY 2 cut(s) 741, 1163
Asp700I GAANNNNTTC 1 cut(s) 1402
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 884, 970, 1527
BamHI GGATCC 1 cut(s) 304
BauI CACGAG 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 468, 688
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 1069, 1309
BccI CCATC 7 cut(s) 295, 664, 679, 867, 989, 1141, 1344
BciT130I CCWGG 2 cut(s) 1054, 1492
BclI TGATCA 2 cut(s) 193, 1099
BcoDI GTCTC 3 cut(s) 339, 1351, 1467
BfaI CTAG 4 cut(s) 200, 837, 863, 1073
BfmI CTRYAG 1 cut(s) 1024
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 498
BisI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
BlsI GCNGC 6 cut(s) 24, 163, 394, 776, 1059, 1299
Bme1390I CCNGG 2 cut(s) 1054, 1492
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 306, 488
BmrFI CCNGG 2 cut(s) 1054, 1492
BmsI GCATC 2 cut(s) 379, 786
BpiI GAAGAC 2 cut(s) 468, 688
BpmI CTGGAG 3 cut(s) 321, 1099, 1236
Bpu10I CCTNAGC 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 539
BsaI GGTCTC 2 cut(s) 339, 1467
BsaJI CCNNGG 5 cut(s) 42, 165, 294, 530, 765
Bse1I ACTGG 4 cut(s) 325, 338, 488, 1082
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 1054, 1492
BseDI CCNNGG 5 cut(s) 42, 165, 294, 530, 765
BseGI GGATG 6 cut(s) 280, 370, 391, 717, 970, 1152
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 320, 819
BseNI ACTGG 4 cut(s) 325, 338, 488, 1082
BseXI GCAGC 2 cut(s) 1069, 1309
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 440, 770, 1490
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 3 cut(s) 339, 1351, 1467
BsnI GGCC 3 cut(s) 440, 770, 1490
Bso31I GGTCTC 2 cut(s) 339, 1467
Bsp1407I TGTACA 1 cut(s) 1465
Bsp19I CCATGG 2 cut(s) 165, 294
BspACI CCGC 7 cut(s) 23, 122, 162, 261, 392, 458, 774
BspANI GGCC 3 cut(s) 440, 770, 1490
BspCNI CTCAG 2 cut(s) 321, 818
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 306, 488
BspMI ACCTGC 1 cut(s) 498
BspPI GGATC 5 cut(s) 36, 299, 312, 939, 1023
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 2 cut(s) 339, 1467
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 1465
BsrI ACTGG 4 cut(s) 325, 338, 488, 1082
BssECI CCNNGG 5 cut(s) 42, 165, 294, 530, 765
BssNI GRCGYC 1 cut(s) 539
BssSI CACGAG 1 cut(s) 610
BssT1I CCWWGG 3 cut(s) 165, 294, 530
Bst2BI CACGAG 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 1054, 1492
Bst4CI ACNGT 3 cut(s) 706, 1463, 1478
Bst6I CTCTTC 1 cut(s) 1479
BstACI GRCGYC 1 cut(s) 539
BstAFI CTTAAG 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 1465
BstC8I GCNNGC 4 cut(s) 217, 326, 676, 772
BstDEI CTNAG 3 cut(s) 329, 805, 985
BstDSI CCRYGG 3 cut(s) 165, 294, 765
BstF5I GGATG 6 cut(s) 280, 370, 391, 717, 970, 1152
BstFNI CGCG 1 cut(s) 124
BstMAI GTCTC 3 cut(s) 339, 1351, 1467
BstMWI GCNNNNNNNGC 4 cut(s) 53, 121, 212, 863
BstNI CCWGG 2 cut(s) 1054, 1492
BstNSI RCATGY 2 cut(s) 403, 583
BstSCI CCNGG 2 cut(s) 1052, 1490
BstSFI CTRYAG 1 cut(s) 1024
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 1069, 1309
BstV2I GAAGAC 2 cut(s) 468, 688
BstX2I RGATCY 3 cut(s) 28, 304, 1015
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 3 cut(s) 28, 304, 1015
BsuRI GGCC 3 cut(s) 440, 770, 1490
BtgI CCRYGG 3 cut(s) 165, 294, 765
BtgZI GCGATG 1 cut(s) 1322
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 6 cut(s) 280, 370, 391, 717, 970, 1152
BtsIMutI CAGTG 1 cut(s) 1468
BveI ACCTGC 1 cut(s) 498
Cac8I GCNNGC 4 cut(s) 217, 326, 676, 772
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 2 cut(s) 547, 1303
Csp6I GTAC 5 cut(s) 428, 661, 1279, 1376, 1466
CviAII CATG 9 cut(s) 166, 220, 295, 400, 580, 635, 781, 820, 1257
CviQI GTAC 5 cut(s) 428, 661, 1279, 1376, 1466
DdeI CTNAG 3 cut(s) 329, 805, 985
Eam1104I CTCTTC 1 cut(s) 1479
EarI CTCTTC 1 cut(s) 1479
Eco130I CCWWGG 3 cut(s) 165, 294, 530
Eco31I GGTCTC 2 cut(s) 339, 1467
EcoRII CCWGG 2 cut(s) 1052, 1490
EcoT14I CCWWGG 3 cut(s) 165, 294, 530
EcoT22I ATGCAT 1 cut(s) 1413
ErhI CCWWGG 3 cut(s) 165, 294, 530
FaeI CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
FatI CATG 9 cut(s) 165, 219, 294, 399, 579, 634, 780, 819, 1256
FbaI TGATCA 2 cut(s) 193, 1099
FblI GTMKAC 2 cut(s) 1371, 1496
Fnu4HI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
FokI GGATG 6 cut(s) 287, 377, 398, 724, 957, 1159
Fsp4HI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
FspBI CTAG 4 cut(s) 200, 837, 863, 1073
GluI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
GsuI CTGGAG 3 cut(s) 321, 1099, 1236
HaeIII GGCC 3 cut(s) 440, 770, 1490
HapII CCGG 1 cut(s) 26
HgaI GACGC 2 cut(s) 547, 1303
Hin1I GRCGYC 1 cut(s) 539
Hin1II CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
HincII GTYRAC 2 cut(s) 318, 537
HindII GTYRAC 2 cut(s) 318, 537
HinfI GANTC 6 cut(s) 376, 550, 693, 901, 1249, 1532
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 884, 970, 1527
Hpy166II GTNNAC 5 cut(s) 318, 537, 1372, 1466, 1497
Hpy188I TCNGA 5 cut(s) 193, 413, 592, 999, 1333
Hpy188III TCNNGA 5 cut(s) 141, 419, 610, 624, 1233
Hpy8I GTNNAC 5 cut(s) 318, 537, 1372, 1466, 1497
HpyAV CCTTC 4 cut(s) 430, 824, 884, 891
HpyCH4III ACNGT 3 cut(s) 706, 1463, 1478
HpyCH4IV ACGT 2 cut(s) 314, 1374
HpyCH4V TGCA 9 cut(s) 206, 219, 583, 1090, 1169, 1200, 1381, 1411, 1550
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 121, 212, 863
HpyF3I CTNAG 3 cut(s) 329, 805, 985
HpySE526I ACGT 2 cut(s) 314, 1374
Hsp92I GRCGYC 1 cut(s) 539
Hsp92II CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
Ksp22I TGATCA 2 cut(s) 193, 1099
LmnI GCTCC 3 cut(s) 345, 455, 1154
Lsp1109I GCAGC 2 cut(s) 1069, 1309
LweI GCATC 2 cut(s) 379, 786
MaeI CTAG 4 cut(s) 200, 837, 863, 1073
MaeII ACGT 2 cut(s) 314, 1374
MaeIII GTNAC 4 cut(s) 95, 910, 1291, 1478
MbiI CCGCTC 1 cut(s) 458
MboII GAAGA 8 cut(s) 473, 688, 694, 889, 1179, 1412, 1496, 1541
MflI RGATCY 3 cut(s) 28, 304, 1015
MluCI AATT 6 cut(s) 555, 722, 741, 1045, 1163, 1269
MlyI GAGTC 2 cut(s) 702, 1243
MmeI TCCRAC 2 cut(s) 670, 1124
MnlI CCTC 9 cut(s) 52, 167, 324, 951, 978, 984, 1033, 1144, 1480
Mph1103I ATGCAT 1 cut(s) 1413
MroXI GAANNNNTTC 1 cut(s) 1402
MseI TTAA 4 cut(s) 381, 753, 1440, 1517
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 1060
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 1054, 1492
MvaI CCWGG 2 cut(s) 1054, 1492
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 4 cut(s) 53, 121, 212, 863
NcoI CCATGG 2 cut(s) 165, 294
NlaIII CATG 9 cut(s) 169, 223, 298, 403, 583, 638, 784, 823, 1260
NlaIV GGNNCC 2 cut(s) 306, 488
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 3 cut(s) 910, 1291, 1478
NsiI ATGCAT 1 cut(s) 1413
NspI RCATGY 2 cut(s) 403, 583
PciI ACATGT 1 cut(s) 399
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 1114
PdmI GAANNNNTTC 1 cut(s) 1402
PfeI GAWTC 4 cut(s) 376, 550, 901, 1532
PkrI GCNGC 6 cut(s) 24, 163, 394, 776, 1059, 1299
PleI GAGTC 2 cut(s) 701, 1243
PpsI GAGTC 2 cut(s) 701, 1243
PscI ACATGT 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 1052, 1490
PspGI CCWGG 2 cut(s) 1052, 1490
PspN4I GGNNCC 2 cut(s) 306, 488
PspPI GGNCC 1 cut(s) 439
PsrI GAACNNNNNNTAC 2 cut(s) 560, 592
PsuI RGATCY 3 cut(s) 28, 304, 1015
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 5 cut(s) 429, 662, 1280, 1377, 1467
RsaNI GTAC 5 cut(s) 428, 661, 1279, 1376, 1466
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 4 cut(s) 381, 753, 1440, 1517
SatI GCNGC 6 cut(s) 23, 162, 393, 775, 1058, 1298
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 2 cut(s) 702, 1243
ScrFI CCNGG 2 cut(s) 1054, 1492
SfaNI GCATC 2 cut(s) 379, 786
SfcI CTRYAG 1 cut(s) 1024
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 6 cut(s) 555, 722, 741, 1045, 1163, 1269
SsiI CCGC 7 cut(s) 23, 122, 162, 261, 392, 458, 774
SspMI CTAG 4 cut(s) 200, 837, 863, 1073
StyD4I CCNGG 2 cut(s) 1052, 1490
StyI CCWWGG 3 cut(s) 165, 294, 530
TaaI ACNGT 3 cut(s) 706, 1463, 1478
TaiI ACGT 2 cut(s) 317, 1377
TaqI TCGA 1 cut(s) 943
TasI AATT 6 cut(s) 555, 722, 741, 1045, 1163, 1269
TatI WGTACW 2 cut(s) 660, 1465
TauI GCSGC 4 cut(s) 25, 164, 395, 777
TfiI GAWTC 4 cut(s) 376, 550, 901, 1532
Tru1I TTAA 4 cut(s) 381, 753, 1440, 1517
Tru9I TTAA 4 cut(s) 381, 753, 1440, 1517
TscAI CASTG 1 cut(s) 1468
TseFI GTSAC 3 cut(s) 910, 1291, 1478
TseI GCWGC 2 cut(s) 1057, 1297
Tsp45I GTSAC 3 cut(s) 910, 1291, 1478
TspDTI ATGAA 7 cut(s) 177, 270, 651, 688, 728, 903, 1179
TspGWI ACGGA 3 cut(s) 754, 1296, 1301
TspRI CASTG 1 cut(s) 1468
Vha464I CTTAAG 1 cut(s) 380
XapI RAATTY 2 cut(s) 741, 1163
XceI RCATGY 2 cut(s) 403, 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XmiI GTMKAC 2 cut(s) 1371, 1496
XmnI GAANNNNTTC 1 cut(s) 1402
XspI CTAG 4 cut(s) 200, 837, 863, 1073
Zsp2I ATGCAT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.