Rroxscaffold_2G00081810

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013704
Physical Location & Seq
Reverse (-)
4798163 .. 4801059
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081810.1

Sequence Viewer

Length: 1455 bp
ATGGACACTCAGAATCATAAATCCAGAAAAAGGTTTAGAAAGTGGTTCAAAAAAAAGCACAAGAAATATGACCCATATCAACTGAGCCAAGTTTCAGATGGGGGTGAAGATGAAAGTGGTGATTACTTAGATGAGATTGTCACGCAGTCCATGGAGATGGGTTCGCACACTTCTACTAATGAGTTGAGAATCTTTGTGGGAACTTGGAATGTGGCTGGACGGTCTCCCATAGGGAGCTTAGCAGTTGATTTGGAGGAGTGGCTAAATCTTAAGGATGCAGCAGACTTGTATGTTCTTGGGTTTCAAGAGATTGTACCTTTGAAGACACGAACTGTGATAGGGACAGAAGACCCAACTGAAGCAAGAAATTGGAACCTGTTGATAGAGAAAACTCTCAACAACAAACATGGCAGCCCTTGGTTCACATCCATATCAAACCCTATTTCAAGTGAAAACTACCAGTATGTGGACATGCCTGACCCTGAAAGCACAAAAAGCGTTAGCAACCATACTGGGAGCCCTATTGTAGAGCAATATGAAATGCCAAAGGGTGTCAGTAAGTACAAGCTAATGGCAAGCAAGAAGATGGTTGGAGTATTCATTAGTGTATGGATAAAAAGTGAATTGCTTAGAAAGTTTTGCATTTCAGATGTTAAAGTTTGTTCAGTGGCCTGTGGTATCATGGGTTATTTGGGAAATAAAGGTTCAGTTTCAGTCAGCATGACAATTGAAGGAACTAGTTTTTGCTTTGTTGTTGCCCATTTGGCTTCTGGCGAGAAGAAAGGAGATGAGGGCAGAAGGAATCACCAAGTCTCAGAGATTTTTAGGCGAACCACTTTCCCTCGATCTCCCAGCATCCCTACAGACAATCATATTTCCCACCCTCTCACCATCTTAGGACACGATCGGATATTCTGGTTTGGCGATCTCAACTATAGGTTATACTTGGAGGACAATTTAGCCAGGCAGCTGATAAACAAACTAGACTGGCGAGCATTACAAGAGTTCGATCAGCTTCGTAGGGAACGTGAATATGGTGGGGTATTTCAGGGATGGGAAGAGGGAGCAATAGAATTTGCACCTACATACAAGTATTCTTCATCAAATTGCAATAGATACTCAGGTGGGCTTCCAGGCAAATCAGGAGAGAAGCAAAGAACTCCAGCATGGTGCGACAGAATTCTATGGTATGGAAAAGGGGTGACACAGCTCTCCTATTTCCGCAGCGAGAGTAAGTTCTCTGACCACAGGCCAGTCTCTGCCCTATTCTCAACACAGGTAGAAGTAGAGAAGTCTACTAATCCTAGAATGGTTTCACTGCAAACAATTCTTCCCACCATAACACTTCCTACAGCAACTGAGCAGAGCAACCATGCTGATAGGACCCAATCTACATTGCTATCATTCCTGGTAGAGGATATAGAAGCATCACCAACACATAAAGCAAAAGGGTAA

Protein Analysis

484

Amino Acids

54.92

Weight (kDa)

8.06

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 67 - 138 4.2e-06 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 183 - 421 7.5e-58 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013704)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49730 FvH4_6g49730 FvH4_6g49730
malus_domestica MD09G1042100.v1.1 MD17G1043400.v1.1
prunus_persica Prupe.3G275700_v2.0.a1 Prupe.3G275700_v2.0.a1
pyrus_communis pycom111g03300 pycom17g03870
rosa_chinensis RchiOBHm_Chr2g0169761
rosa_laevigata RLG00000021900
rosa_multiflora Rmu_ssc0000389.1_g000029
rosa_roxburghii Rroxscaffold_2G00081810
rosa_rugosa Rorug02G0542900 Rorug02G0543000
rosa_samantha Rh2AG615000 Rh2DG638100
rosa_wichuraiana Rw2G050990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 1 cut(s) 1295
AciI CCGC 1 cut(s) 1222
AcsI RAATTY 2 cut(s) 1073, 1179
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 315, 563
AfiI CCNNNNNNNGG 3 cut(s) 30, 466, 1414
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 5 cut(s) 49, 305, 322, 447, 731
AhlI ACTAGT 1 cut(s) 737
AjnI CCWGG 3 cut(s) 962, 1132, 1407
AluBI AGCT 5 cut(s) 237, 568, 970, 1015, 1210
AluI AGCT 5 cut(s) 237, 568, 970, 1015, 1210
Alw26I GTCTC 3 cut(s) 228, 817, 1261
AlwNI CAGNNNCTG 2 cut(s) 1259, 1358
AoxI GGCC 2 cut(s) 669, 1250
ApeKI GCWGC 4 cut(s) 278, 411, 967, 1224
ApoI RAATTY 2 cut(s) 1073, 1179
Asp700I GAANNNNTTC 1 cut(s) 1312
AspS9I GGNCC 1 cut(s) 1383
AsuHPI GGTGA 6 cut(s) 116, 131, 797, 880, 1213, 1422
AvaII GGWCC 1 cut(s) 1383
BaeI ACNNNNGTAYC 2 cut(s) 1108, 1141
BanII GRGCYC 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 329, 354
BbvI GCAGC 4 cut(s) 290, 423, 979, 1236
BccI CCATC 5 cut(s) 92, 151, 580, 899, 1047
BciT130I CCWGG 3 cut(s) 964, 1134, 1409
BcoDI GTCTC 3 cut(s) 228, 817, 1261
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 3 cut(s) 738, 983, 1305
BfmI CTRYAG 3 cut(s) 861, 934, 1350
BfrI CTTAAG 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 764
BisI GCNGC 4 cut(s) 279, 412, 968, 1225
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 4 cut(s) 280, 413, 969, 1226
Bme1390I CCNGG 3 cut(s) 964, 1134, 1409
Bme18I GGWCC 1 cut(s) 1383
BmgT120I GGNCC 1 cut(s) 1383
BmiI GGNNCC 3 cut(s) 374, 518, 1385
BmrFI CCNGG 3 cut(s) 964, 1134, 1409
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 265, 864, 1436
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 329, 354
BpmI CTGGAG 1 cut(s) 1146
Bpu1102I GCTNAGC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 150, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 466, 1414
Bse1I ACTGG 4 cut(s) 460, 517, 992, 1253
Bse3DI GCAATG 1 cut(s) 1394
BseBI CCWGG 3 cut(s) 964, 1134, 1409
BseDI CCNNGG 2 cut(s) 150, 416
BseGI GGATG 4 cut(s) 280, 425, 855, 1058
BseLI CCNNNNNNNGG 3 cut(s) 30, 466, 1414
BseMI GCAATG 1 cut(s) 1394
BseMII CTCAG 5 cut(s) 23, 74, 828, 1134, 1350
BseNI ACTGG 4 cut(s) 460, 517, 992, 1253
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 4 cut(s) 290, 423, 979, 1236
BseYI CCCAGC 1 cut(s) 851
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 2 cut(s) 671, 1252
BsiEI CGRYCG 1 cut(s) 907
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 3 cut(s) 30, 466, 1414
BsmAI GTCTC 3 cut(s) 228, 817, 1261
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 2 cut(s) 671, 1252
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 4 cut(s) 845, 904, 925, 1009
Bsp1720I GCTNAGC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 1222
BspANI GGCC 2 cut(s) 671, 1252
BspCNI CTCAG 5 cut(s) 22, 75, 827, 1133, 1351
BspLI GGNNCC 3 cut(s) 374, 518, 1385
BspTI CTTAAG 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 1394
BsrI ACTGG 4 cut(s) 460, 517, 992, 1253
BssECI CCNNGG 2 cut(s) 150, 416
BssMI GATC 4 cut(s) 845, 904, 925, 1009
BssT1I CCWWGG 2 cut(s) 150, 416
Bst2UI CCWGG 3 cut(s) 964, 1134, 1409
Bst4CI ACNGT 2 cut(s) 222, 334
Bst6I CTCTTC 1 cut(s) 1053
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 577, 993
BstDEI CTNAG 9 cut(s) 9, 83, 127, 238, 629, 814, 895, 1120, 1359
BstDSI CCRYGG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 1412
BstF5I GGATG 4 cut(s) 280, 425, 855, 1058
BstKTI GATC 4 cut(s) 848, 907, 928, 1012
BstMAI GTCTC 3 cut(s) 228, 817, 1261
BstMBI GATC 4 cut(s) 845, 904, 925, 1009
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 2 cut(s) 495, 764
BstNI CCWGG 3 cut(s) 964, 1134, 1409
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 962, 1132, 1407
BstSFI CTRYAG 3 cut(s) 861, 934, 1350
BstV1I GCAGC 4 cut(s) 290, 423, 979, 1236
BstV2I GAAGAC 2 cut(s) 329, 354
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 671, 1252
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 4 cut(s) 280, 425, 855, 1058
BtsI GCAGTG 1 cut(s) 1316
BtsIMutI CAGTG 2 cut(s) 672, 1316
Cac8I GCNNGC 2 cut(s) 577, 993
CaiI CAGNNNCTG 2 cut(s) 1259, 1358
Cfr13I GGNCC 1 cut(s) 1383
Csp6I GTAC 2 cut(s) 314, 562
CviAII CATG 7 cut(s) 151, 407, 472, 682, 721, 1167, 1373
CviQI GTAC 2 cut(s) 314, 562
DdeI CTNAG 9 cut(s) 9, 83, 127, 238, 629, 814, 895, 1120, 1359
DpnI GATC 4 cut(s) 847, 906, 927, 1011
DpnII GATC 4 cut(s) 845, 904, 925, 1009
Eam1104I CTCTTC 1 cut(s) 1053
EarI CTCTTC 1 cut(s) 1053
Eco130I CCWWGG 2 cut(s) 150, 416
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 1383
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 1412
EcoO109I RGGNCCY 1 cut(s) 1383
EcoRI GAATTC 1 cut(s) 1179
EcoRII CCWGG 3 cut(s) 962, 1132, 1407
EcoT14I CCWWGG 2 cut(s) 150, 416
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 2 cut(s) 150, 416
FaeI CATG 7 cut(s) 154, 410, 475, 685, 724, 1170, 1376
FaqI GGGAC 1 cut(s) 355
FatI CATG 7 cut(s) 150, 406, 471, 681, 720, 1166, 1372
FblI GTMKAC 1 cut(s) 1295
Fnu4HI GCNGC 4 cut(s) 279, 412, 968, 1225
FokI GGATG 4 cut(s) 287, 412, 842, 1065
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 4 cut(s) 279, 412, 968, 1225
FspBI CTAG 3 cut(s) 738, 983, 1305
GluI GCNGC 4 cut(s) 279, 412, 968, 1225
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 1 cut(s) 1146
HaeIII GGCC 2 cut(s) 671, 1252
Hin1II CATG 7 cut(s) 154, 410, 475, 685, 724, 1170, 1376
HinfI GANTC 3 cut(s) 13, 189, 802
HphI GGTGA 6 cut(s) 116, 131, 797, 880, 1213, 1422
Hpy166II GTNNAC 3 cut(s) 423, 469, 1296
Hpy188I TCNGA 6 cut(s) 12, 97, 649, 817, 909, 1243
Hpy188III TCNNGA 3 cut(s) 24, 305, 1143
Hpy8I GTNNAC 3 cut(s) 423, 469, 1296
HpyAV CCTTC 2 cut(s) 725, 792
HpyCH4III ACNGT 2 cut(s) 222, 334
HpyCH4IV ACGT 1 cut(s) 1027
HpyCH4V TGCA 5 cut(s) 278, 642, 1079, 1110, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 495, 764
HpyF3I CTNAG 9 cut(s) 9, 83, 127, 238, 629, 814, 895, 1120, 1359
HpySE526I ACGT 1 cut(s) 1027
Hsp92II CATG 7 cut(s) 154, 410, 475, 685, 724, 1170, 1376
Kzo9I GATC 4 cut(s) 845, 904, 925, 1009
LmnI GCTCC 3 cut(s) 234, 516, 1064
Lsp1109I GCAGC 4 cut(s) 290, 423, 979, 1236
LweI GCATC 3 cut(s) 265, 864, 1436
MaeI CTAG 3 cut(s) 738, 983, 1305
MaeII ACGT 1 cut(s) 1027
MaeIII GTNAC 2 cut(s) 139, 1201
MalI GATC 4 cut(s) 847, 906, 927, 1011
MboI GATC 4 cut(s) 845, 904, 925, 1009
MboII GAAGA 8 cut(s) 119, 334, 359, 595, 790, 1070, 1089, 1322
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 8 cut(s) 367, 623, 726, 955, 1073, 1105, 1179, 1326
MmeI TCCRAC 1 cut(s) 571
MnlI CCTC 7 cut(s) 247, 784, 852, 894, 943, 1054, 1408
MroXI GAANNNNTTC 1 cut(s) 1312
MseI TTAA 2 cut(s) 270, 654
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 970
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 964, 1134, 1409
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 3 cut(s) 964, 1134, 1409
MwoI GCNNNNNNNGC 2 cut(s) 495, 764
NcoI CCATGG 1 cut(s) 150
NdeII GATC 4 cut(s) 845, 904, 925, 1009
NlaIII CATG 7 cut(s) 154, 410, 475, 685, 724, 1170, 1376
NlaIV GGNNCC 3 cut(s) 374, 518, 1385
NmuCI GTSAC 2 cut(s) 139, 1201
NspI RCATGY 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 1024
PdmI GAANNNNTTC 1 cut(s) 1312
PfeI GAWTC 3 cut(s) 13, 189, 802
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 4 cut(s) 280, 413, 969, 1226
Ple19I CGATCG 1 cut(s) 907
PpuMI RGGWCCY 1 cut(s) 1383
Psp5II RGGWCCY 1 cut(s) 1383
Psp6I CCWGG 3 cut(s) 962, 1132, 1407
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 3 cut(s) 962, 1132, 1407
PspN4I GGNNCC 3 cut(s) 374, 518, 1385
PspPI GGNCC 1 cut(s) 1383
PspPPI RGGWCCY 1 cut(s) 1383
PstNI CAGNNNCTG 2 cut(s) 1259, 1358
PvuI CGATCG 1 cut(s) 907
PvuII CAGCTG 1 cut(s) 970
RsaI GTAC 2 cut(s) 315, 563
RsaNI GTAC 2 cut(s) 314, 562
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 270, 654
SatI GCNGC 4 cut(s) 279, 412, 968, 1225
Sau3AI GATC 4 cut(s) 845, 904, 925, 1009
Sau96I GGNCC 1 cut(s) 1383
ScrFI CCNGG 3 cut(s) 964, 1134, 1409
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 3 cut(s) 265, 864, 1436
SfcI CTRYAG 3 cut(s) 861, 934, 1350
SinI GGWCC 1 cut(s) 1383
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SpeI ACTAGT 1 cut(s) 737
Sse9I AATT 8 cut(s) 367, 623, 726, 955, 1073, 1105, 1179, 1326
SsiI CCGC 1 cut(s) 1222
SspMI CTAG 3 cut(s) 738, 983, 1305
StyD4I CCNGG 3 cut(s) 962, 1132, 1407
StyI CCWWGG 2 cut(s) 150, 416
TaaI ACNGT 2 cut(s) 222, 334
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 2 cut(s) 844, 1008
TasI AATT 8 cut(s) 367, 623, 726, 955, 1073, 1105, 1179, 1326
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 3 cut(s) 13, 189, 802
Tru1I TTAA 2 cut(s) 270, 654
Tru9I TTAA 2 cut(s) 270, 654
TscAI CASTG 2 cut(s) 672, 1323
TseFI GTSAC 2 cut(s) 139, 1201
TseI GCWGC 4 cut(s) 278, 411, 967, 1224
Tsp45I GTSAC 2 cut(s) 139, 1201
TspDTI ATGAA 4 cut(s) 126, 552, 589, 1089
TspRI CASTG 2 cut(s) 672, 1323
Van91I CCANNNNNTGG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 1383
XagI CCTNNNNNAGG 1 cut(s) 1412
XapI RAATTY 2 cut(s) 1073, 1179
XceI RCATGY 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 2 cut(s) 95, 767
XmiI GTMKAC 1 cut(s) 1295
XmnI GAANNNNTTC 1 cut(s) 1312
XspI CTAG 3 cut(s) 738, 983, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.