FvH4_6g51040

Isocitrate dehydrogenase NADP

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37892782 .. 37899225
6444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51040.t1

Sequence Viewer

Length: 1449 bp
ATGCTCAAAGCGAGCCTCCAATTAAGCGCCATGTCGCGCGCCGCCTTAATATCTTCTTCTTCGTCTTCTATAATAGCCCCGAGAAACCCTAGCTTCTCCTTCACTTCCTCGCCGAGCCTCTTCAATAATGGAGTCCGCAACCGCGTCTCCTTCGCCCCAACCACTAATCGCACCTCGCTGCGGTGCTACGCTGCTGCTGCCGGTGGCTTCGATAGAGTCCGGGTTCAGAATCCGATCGTCGAAATGGACGGTGATGAAATGACGAGGATCATATGGACGGCAATCAAAGAAAAGCTTATTTTCCCCTATGTGGATTTGGACATAAAGTATTATGATTTAGGGATTTTGAACCGTGATGCTACTGATGACAAAGTTACGGTAGAGAGTGCTGAAGCCACTCTTAAGTACAATGTTGCTGTGAAATGTGCTACAATAACTCCTGATGAGACCAGAATGAAGGAGTTTGGGCTCAAATCAATGTGGAGGAGTCCCAATGGCACAATTAGAAACATTCTAAACGGTACTGTCTTTCGTGAACCTATCTTATGCAAAAACATTCCTAGAATAGTTCCTGGTTGGAAGAAACCCATATGTATTGGTAGGCATGCTTTTGGTGATCAGTATCGAGCCACTGATACAGTTATCACGGGGCCAGGAAAGCTGAAAATGGTATTTGTCCCAGAGGGAGGCGGCACCCCTACAGAGCTTGATGTTTACGACTTCAAAGGTCCTGGTGTGGCCCTCGCTATGTATAATGTTGATGAGTCTATTCGAGCTTTTGCTGACTCATCTATGTCCATGGCATTTTCCAAGAAGTGGCCGCTATACTTGAGCACCAAAAACACAATTCTTAAAAAATATGATGGCAGGTTTAAGGACATATTTGAGGAGGTTTATGTGGAGAAGTGGAAGCAGAAGTTTGAAGAAAACTCTATATGGTATGAACATCGGCTAATTGATGACATGGTGGCTTATGCAATCAAAAGTGAGGGTGGATATGTTTGGGCATGCAAAAACTATGATGGAGATGTTCAGAGTGATTTGCTTGCTCAAGGATTTGGCTCTTTGGGCCTCATGAGTTCTGTGCTGCTATCCTCAGATGGGAAAACATTAGAAGCTGAAGCAGCTCATGGGACAGTAACTCGTCATTTTCGGTTACATGAGAAGGGACAGGAGACCAGTACAAACAGTATTGCATCAATATTTGCTTGGACACGAGGCCTAGAGCATAGGGCCAAGTTAGATAAAAATGACAAGTTGCTAGATTTTGTTCGAAAGTTGGAGGCTGCATGCATTGAGACAGTGGAGGCAGGAAACATGACTAAGGATCTTGCCCTATTGATCCATGGCCCCAAGGTATCAAGGGAGTTCTATTTGAACACACAAGAGTTTATTGACACAGTGGCAAAGAACGTTGAGCAAAAGCTTCGGGAACCTGCGCTGGTCTAA

Protein Analysis

483

Amino Acids

53.97

Weight (kDa)

8.5

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 75 - 468 4.9e-74 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 858, 1444
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 816
AccII CGCG 3 cut(s) 37, 39, 144
AciI CCGC 6 cut(s) 42, 136, 142, 181, 690, 821
AclI AACGTT 1 cut(s) 1413
AclWI GGATC 3 cut(s) 275, 1335, 1336
AcoI YGGCCR 1 cut(s) 818
AcuI CTGAAG 2 cut(s) 411, 1140
AfaI GTAC 3 cut(s) 407, 523, 1183
AfiI CCNNNNNNNGG 5 cut(s) 180, 310, 686, 816, 1101
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 5 cut(s) 124, 349, 724, 923, 1378
AjnI CCWGG 3 cut(s) 571, 652, 730
AluBI AGCT 8 cut(s) 93, 295, 661, 706, 776, 1118, 1127, 1426
AluI AGCT 8 cut(s) 93, 295, 661, 706, 776, 1118, 1127, 1426
Alw21I GWGCWC 1 cut(s) 836
Alw26I GTCTC 4 cut(s) 151, 440, 1169, 1292
AlwI GGATC 3 cut(s) 275, 1335, 1336
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 7 cut(s) 650, 738, 818, 1069, 1219, 1233, 1348
ApeKI GCWGC 7 cut(s) 178, 191, 194, 197, 1087, 1124, 1286
AspLEI GCGC 4 cut(s) 29, 39, 41, 1441
AspS9I GGNCC 6 cut(s) 650, 728, 739, 1069, 1233, 1349
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 263, 626
AsuII TTCGAA 1 cut(s) 1273
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 728
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 471
BauI CACGAG 1 cut(s) 1215
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 836
BbvI GCAGC 7 cut(s) 165, 178, 181, 184, 1074, 1136, 1273
BccI CCATC 3 cut(s) 857, 1016, 1094
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 1409, 1443
BciT130I CCWGG 3 cut(s) 573, 654, 732
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 4 cut(s) 151, 440, 1169, 1292
BfaI CTAG 4 cut(s) 90, 561, 1223, 1262
BfmI CTRYAG 1 cut(s) 699
BfoI RGCGCY 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 401
BfuAI ACCTGC 2 cut(s) 858, 1444
Bme1390I CCNGG 4 cut(s) 221, 573, 654, 732
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 6 cut(s) 650, 728, 739, 1069, 1233, 1349
BmiI GGNNCC 4 cut(s) 651, 694, 1351, 1434
BmrFI CCNGG 4 cut(s) 221, 573, 654, 732
BmsI GCATC 2 cut(s) 346, 1205
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 1273
BpuEI CTTGAG 2 cut(s) 850, 1035
BpuMI CCSGG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 621
BsaI GGTCTC 2 cut(s) 440, 1169
BsaJI CCNNGG 3 cut(s) 798, 1345, 1353
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 421, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 310, 686, 816, 1101
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 1179
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 3 cut(s) 573, 654, 732
BseDI CCNNGG 3 cut(s) 798, 1345, 1353
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 5 cut(s) 180, 310, 686, 816, 1101
BseMII CTCAG 1 cut(s) 1110
BseNI ACTGG 1 cut(s) 1179
BsePI GCGCGC 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 499, 902
BseXI GCAGC 7 cut(s) 165, 178, 181, 184, 1074, 1136, 1273
Bsh1236I CGCG 3 cut(s) 37, 39, 144
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 7 cut(s) 652, 740, 820, 1071, 1221, 1235, 1350
BshNI GGYRCC 1 cut(s) 692
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 836
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 2 cut(s) 201, 220
BslFI GGGAC 4 cut(s) 474, 662, 1147, 1182
BslI CCNNNNNNNGG 5 cut(s) 180, 310, 686, 816, 1101
BsmAI GTCTC 4 cut(s) 151, 440, 1169, 1292
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 4 cut(s) 474, 662, 1147, 1182
BsnI GGCC 7 cut(s) 652, 740, 820, 1071, 1221, 1235, 1350
Bso31I GGTCTC 2 cut(s) 440, 1169
BsoBI CYCGRG 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 1273
Bsp1286I GDGCHC 2 cut(s) 471, 836
Bsp143I GATC 5 cut(s) 234, 267, 616, 1327, 1341
Bsp19I CCATGG 2 cut(s) 798, 1345
BspACI CCGC 6 cut(s) 42, 136, 142, 181, 690, 821
BspANI GGCC 7 cut(s) 652, 740, 820, 1071, 1221, 1235, 1350
BspCNI CTCAG 1 cut(s) 1109
BspFNI CGCG 3 cut(s) 37, 39, 144
BspHI TCATGA 1 cut(s) 1074
BspLI GGNNCC 4 cut(s) 651, 694, 1351, 1434
BspMI ACCTGC 2 cut(s) 858, 1444
BspPI GGATC 3 cut(s) 275, 1335, 1336
BspT104I TTCGAA 1 cut(s) 1273
BspT107I GGYRCC 1 cut(s) 692
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 2 cut(s) 440, 1169
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 1179
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 798, 1345, 1353
BssHII GCGCGC 1 cut(s) 37
BssMI GATC 5 cut(s) 234, 267, 616, 1327, 1341
BssSI CACGAG 1 cut(s) 1215
BssT1I CCWWGG 3 cut(s) 798, 1345, 1353
Bst2BI CACGAG 1 cut(s) 1215
Bst2UI CCWGG 3 cut(s) 573, 654, 732
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 1273
BstC8I GCNNGC 6 cut(s) 13, 39, 606, 1009, 1047, 1291
BstDEI CTNAG 2 cut(s) 1096, 1323
BstDSI CCRYGG 2 cut(s) 798, 1345
BstFNI CGCG 3 cut(s) 37, 39, 144
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 4 cut(s) 29, 39, 41, 1441
BstKTI GATC 5 cut(s) 237, 270, 619, 1330, 1344
BstMAI GTCTC 4 cut(s) 151, 440, 1169, 1292
BstMBI GATC 5 cut(s) 234, 267, 616, 1327, 1341
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 4 cut(s) 197, 658, 1068, 1124
BstNI CCWGG 3 cut(s) 573, 654, 732
BstNSI RCATGY 3 cut(s) 608, 1011, 1293
BstSCI CCNGG 4 cut(s) 219, 571, 652, 730
BstSFI CTRYAG 1 cut(s) 699
BstUI CGCG 3 cut(s) 37, 39, 144
BstV1I GCAGC 7 cut(s) 165, 178, 181, 184, 1074, 1136, 1273
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 1327
BstYI RGATCY 1 cut(s) 1327
BsuRI GGCC 7 cut(s) 652, 740, 820, 1071, 1221, 1235, 1350
BtgI CCRYGG 2 cut(s) 798, 1345
BtsIMutI CAGTG 3 cut(s) 630, 1308, 1407
BveI ACCTGC 2 cut(s) 858, 1444
Cac8I GCNNGC 6 cut(s) 13, 39, 606, 1009, 1047, 1291
CciI TCATGA 1 cut(s) 1074
CfoI GCGC 4 cut(s) 29, 39, 41, 1441
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 6 cut(s) 650, 728, 739, 1069, 1233, 1349
CseI GACGC 1 cut(s) 133
Csp6I GTAC 3 cut(s) 406, 522, 1182
CviQI GTAC 3 cut(s) 406, 522, 1182
DdeI CTNAG 2 cut(s) 1096, 1323
DpnI GATC 5 cut(s) 236, 269, 618, 1329, 1343
DpnII GATC 5 cut(s) 234, 267, 616, 1327, 1341
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 3 cut(s) 798, 1345, 1353
Eco147I AGGCCT 1 cut(s) 1221
Eco24I GRGCYC 1 cut(s) 471
Eco31I GGTCTC 2 cut(s) 440, 1169
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 2 cut(s) 411, 1140
Eco88I CYCGRG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 728
EcoRII CCWGG 3 cut(s) 571, 652, 730
EcoT14I CCWWGG 3 cut(s) 798, 1345, 1353
EcoT22I ATGCAT 1 cut(s) 1295
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 3 cut(s) 798, 1345, 1353
Esp3I CGTCTC 1 cut(s) 151
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 384, 416
FaqI GGGAC 4 cut(s) 474, 662, 1147, 1182
FauNDI CATATG 2 cut(s) 272, 590
FbaI TGATCA 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 471
FspBI CTAG 4 cut(s) 90, 561, 1223, 1262
GlaI GCGC 4 cut(s) 28, 38, 40, 1440
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 7 cut(s) 652, 740, 820, 1071, 1221, 1235, 1350
HapII CCGG 2 cut(s) 201, 220
HgaI GACGC 1 cut(s) 133
HhaI GCGC 4 cut(s) 29, 39, 41, 1441
Hin6I GCGC 4 cut(s) 27, 37, 39, 1439
HinP1I GCGC 4 cut(s) 27, 37, 39, 1439
HindIII AAGCTT 2 cut(s) 293, 1424
HinfI GANTC 6 cut(s) 132, 216, 229, 487, 764, 785
HpaII CCGG 2 cut(s) 201, 220
HphI GGTGA 2 cut(s) 263, 626
Hpy166II GTNNAC 2 cut(s) 536, 715
Hpy188I TCNGA 4 cut(s) 228, 234, 1035, 1099
Hpy188III TCNNGA 4 cut(s) 440, 533, 1075, 1430
Hpy8I GTNNAC 2 cut(s) 536, 715
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 4 cut(s) 109, 160, 451, 1159
HpyCH4IV ACGT 1 cut(s) 1413
HpyCH4V TGCA 6 cut(s) 549, 977, 1011, 1196, 1289, 1293
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 658, 1068, 1124
HpyF3I CTNAG 2 cut(s) 1096, 1323
HpySE526I ACGT 1 cut(s) 1413
HspAI GCGC 4 cut(s) 27, 37, 39, 1439
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 234, 267, 616, 1327, 1341
Lsp1109I GCAGC 7 cut(s) 165, 178, 181, 184, 1074, 1136, 1273
LweI GCATC 2 cut(s) 346, 1205
MaeI CTAG 4 cut(s) 90, 561, 1223, 1262
MaeII ACGT 1 cut(s) 1413
MaeIII GTNAC 3 cut(s) 373, 1138, 1155
MalI GATC 5 cut(s) 236, 269, 618, 1329, 1343
MboI GATC 5 cut(s) 234, 267, 616, 1327, 1341
MboII GAAGA 7 cut(s) 45, 48, 51, 57, 112, 592, 935
MflI RGATCY 1 cut(s) 1327
MhlI GDGCHC 2 cut(s) 471, 836
MluCI AATT 4 cut(s) 20, 501, 846, 954
MlyI GAGTC 5 cut(s) 141, 225, 496, 773, 779
MmeI TCCRAC 2 cut(s) 557, 1260
Mph1103I ATGCAT 1 cut(s) 1295
MseI TTAA 5 cut(s) 23, 47, 402, 852, 873
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 2 cut(s) 201, 220
MspR9I CCNGG 4 cut(s) 221, 573, 654, 732
MvaI CCWGG 3 cut(s) 573, 654, 732
MvnI CGCG 3 cut(s) 37, 39, 144
MwoI GCNNNNNNNGC 4 cut(s) 197, 658, 1068, 1124
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 2 cut(s) 798, 1345
NdeI CATATG 2 cut(s) 272, 590
NdeII GATC 5 cut(s) 234, 267, 616, 1327, 1341
NlaIV GGNNCC 4 cut(s) 651, 694, 1351, 1434
NmeAIII GCCGAG 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 1295
NspI RCATGY 3 cut(s) 608, 1011, 1293
NspV TTCGAA 1 cut(s) 1273
PaeI GCATGC 3 cut(s) 608, 1011, 1293
PagI TCATGA 1 cut(s) 1074
PauI GCGCGC 1 cut(s) 37
PceI AGGCCT 1 cut(s) 1221
PfeI GAWTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 816
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 5 cut(s) 140, 224, 495, 772, 779
PpsI GAGTC 5 cut(s) 140, 224, 495, 772, 779
PpuMI RGGWCCY 1 cut(s) 728
Psp1406I AACGTT 1 cut(s) 1413
Psp5II RGGWCCY 1 cut(s) 728
Psp6I CCWGG 3 cut(s) 571, 652, 730
PspGI CCWGG 3 cut(s) 571, 652, 730
PspN4I GGNNCC 4 cut(s) 651, 694, 1351, 1434
PspPI GGNCC 6 cut(s) 650, 728, 739, 1069, 1233, 1349
PspPPI RGGWCCY 1 cut(s) 728
PsuI RGATCY 1 cut(s) 1327
PteI GCGCGC 1 cut(s) 37
PvuI CGATCG 1 cut(s) 237
RsaI GTAC 3 cut(s) 407, 523, 1183
RsaNI GTAC 3 cut(s) 406, 522, 1182
SaqAI TTAA 5 cut(s) 23, 47, 402, 852, 873
Sau3AI GATC 5 cut(s) 234, 267, 616, 1327, 1341
Sau96I GGNCC 6 cut(s) 650, 728, 739, 1069, 1233, 1349
SchI GAGTC 5 cut(s) 141, 225, 496, 773, 779
ScrFI CCNGG 4 cut(s) 221, 573, 654, 732
SduI GDGCHC 2 cut(s) 471, 836
SfaNI GCATC 2 cut(s) 346, 1205
SfcI CTRYAG 1 cut(s) 699
SfuI TTCGAA 1 cut(s) 1273
SinI GGWCC 1 cut(s) 728
SmlI CTYRAG 3 cut(s) 401, 829, 1050
SmoI CTYRAG 3 cut(s) 401, 829, 1050
SphI GCATGC 3 cut(s) 608, 1011, 1293
Sse9I AATT 4 cut(s) 20, 501, 846, 954
SseBI AGGCCT 1 cut(s) 1221
SsiI CCGC 6 cut(s) 42, 136, 142, 181, 690, 821
SspI AATATT 1 cut(s) 1203
SspMI CTAG 4 cut(s) 90, 561, 1223, 1262
StuI AGGCCT 1 cut(s) 1221
StyD4I CCNGG 4 cut(s) 219, 571, 652, 730
StyI CCWWGG 3 cut(s) 798, 1345, 1353
TaiI ACGT 1 cut(s) 1416
TaqI TCGA 5 cut(s) 210, 240, 625, 772, 1273
TasI AATT 4 cut(s) 20, 501, 846, 954
TatI WGTACW 2 cut(s) 405, 1181
TauI GCSGC 3 cut(s) 44, 693, 823
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 5 cut(s) 23, 47, 402, 852, 873
Tru9I TTAA 5 cut(s) 23, 47, 402, 852, 873
TscAI CASTG 3 cut(s) 637, 1308, 1407
TseI GCWGC 7 cut(s) 178, 191, 194, 197, 1087, 1124, 1286
TspDTI ATGAA 3 cut(s) 270, 470, 957
TspRI CASTG 3 cut(s) 637, 1308, 1407
Van91I CCANNNNNTGG 1 cut(s) 816
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 728
XceI RCATGY 3 cut(s) 608, 1011, 1293
XspI CTAG 4 cut(s) 90, 561, 1223, 1262
Zsp2I ATGCAT 1 cut(s) 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.