Rmu_sc0000912.1_g000003

Isocitrate dehydrogenase NADP

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000912.1
Physical Location & Seq
Reverse (-)
32118 .. 36298
4181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000912.1_g000003.1.cds

Sequence Viewer

Length: 1446 bp
atgctaaaggcgagactccaattgagcgccatgtcgcgcgccgccatgatatcttcttcttcttcgtcatctatagccccgaggaaccctagcttctgcttcacttccacgccgaggcgcttcaatggagtcggcaaccgcgtctctttcgccgcaacctctaatcgcacttcgctccggtgctacgctgctacttccggtggcttcgagaaagtccgggttcagaatccgatcgtcgaaatggacggtgatgaaatgacgaggatcatatggacagcaatcaaagaaaaacttattttcccctatgtggatttggacataaagtattatgatttagggattgagaaccgtgatgctactgatgacaaagttacagtagagagtgccgaagccactcttaagtacaatgttgctgtgaaatgtgctacaataactcctgatgaaaccagaatgaaggagtttgggctaaaatcaatgtggaggagtcccaatggcacaattagaaacattctaaacggtactgtatttcgtgaacctatcctatgccgaaacattcctagaatagttcctggctggaagaaacccatctgtattggtaggcatgctttcggtgatcagtatcgagctactgatacagttatcacgggaccaggaaagctgaaaatggtatttgttccagaaggaggagacacccctacggagcttaatgtctatgatttcaaaggtcctggtgtggccctcgctatgtacaatgttgatgagtctattcgagcttttgctgactcttccatgtcgatggcattttccaagaagtggccactatacttgagcaccaaaaacacaattcttaagaaatatgatggcaggtttaaggacatattcgaggaggtttatgtggaaaagtggaagcagaagtttgaagaaaactctatatggtatgagcatcggctaatagatgacatggtggcttatgcactcaaaagtgagggtggatatgtttgggcttgcaaaaactatgatggagatgtccagagtgatttgcttgctcaaggatttggctctttgggcctcatggcttctgtgctgctatcctcagatgggaaaacaatagaagctgaagcagctcatgggacagtaactcgtcattttcggttacatcagaagggacaagaaaccagtacaaacagtattgcttcaatatttgcatggacaagaggcctagagcataggggcaaattagataaaaatgacaggttgctagattttgttcgaaagttggaggctgcatgcattgagacagtggaggcaggaaacatgactaaggatctcgccttattgatccatggccccaaggtatcaagggagttctatttgaacacagaagagtttattgacacagtggcaaagaatgttgagcaaaagcttcgggaacctgctctggtctaa

Protein Analysis

481

Amino Acids

54.05

Weight (kDa)

8.61

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 855, 1441
AccB7I CCANNNNNTGG 1 cut(s) 813
AccII CGCG 3 cut(s) 37, 39, 141
AciI CCGC 3 cut(s) 42, 139, 153
AclWI GGATC 3 cut(s) 272, 1332, 1333
AcoI YGGCCR 1 cut(s) 815
AcuI CTGAAG 1 cut(s) 1137
AfaI GTAC 4 cut(s) 404, 520, 749, 1180
AfiI CCNNNNNNNGG 5 cut(s) 114, 307, 683, 813, 1098
AflII CTTAAG 2 cut(s) 398, 848
AgsI TTSAA 5 cut(s) 124, 721, 920, 1197, 1375
AjnI CCWGG 3 cut(s) 568, 649, 727
AluBI AGCT 8 cut(s) 93, 626, 658, 703, 773, 1115, 1124, 1423
AluI AGCT 8 cut(s) 93, 626, 658, 703, 773, 1115, 1124, 1423
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 4 cut(s) 7, 148, 681, 1289
AlwI GGATC 3 cut(s) 272, 1332, 1333
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 5 cut(s) 735, 815, 1066, 1216, 1345
ApeKI GCWGC 4 cut(s) 188, 1084, 1121, 1283
AspLEI GCGC 4 cut(s) 29, 39, 41, 120
AspS9I GGNCC 5 cut(s) 647, 725, 736, 1066, 1346
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 260, 623
AsuII TTCGAA 1 cut(s) 1270
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 2 cut(s) 647, 725
BalI TGGCCA 1 cut(s) 817
Bbv12I GWGCWC 1 cut(s) 833
BbvI GCAGC 4 cut(s) 175, 1071, 1133, 1270
BccI CCATC 5 cut(s) 593, 790, 854, 1013, 1091
BcgI CGANNNNNNTGC 2 cut(s) 1406, 1440
BciT130I CCWGG 3 cut(s) 570, 651, 729
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 4 cut(s) 7, 148, 681, 1289
BfaI CTAG 4 cut(s) 90, 558, 1220, 1259
BfmI CTRYAG 1 cut(s) 72
BfoI RGCGCY 2 cut(s) 30, 121
BfrI CTTAAG 2 cut(s) 398, 848
BfuAI ACCTGC 2 cut(s) 855, 1441
BisI GCNGC 6 cut(s) 42, 153, 189, 1085, 1122, 1284
BlsI GCNGC 6 cut(s) 43, 154, 190, 1086, 1123, 1285
Bme1390I CCNGG 4 cut(s) 218, 570, 651, 729
Bme18I GGWCC 2 cut(s) 647, 725
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 5 cut(s) 647, 725, 736, 1066, 1346
BmiI GGNNCC 4 cut(s) 86, 648, 1348, 1431
BmrFI CCNGG 4 cut(s) 218, 570, 651, 729
BmsI GCATC 2 cut(s) 343, 952
Bpu14I TTCGAA 1 cut(s) 1270
BpuEI CTTGAG 2 cut(s) 847, 1032
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 618
BsaJI CCNNGG 4 cut(s) 80, 113, 1342, 1350
BsaWI WCCGGW 2 cut(s) 177, 197
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 5 cut(s) 114, 307, 683, 813, 1098
Bse1I ACTGG 1 cut(s) 1176
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 3 cut(s) 570, 651, 729
BseDI CCNNGG 4 cut(s) 80, 113, 1342, 1350
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 5 cut(s) 114, 307, 683, 813, 1098
BseMII CTCAG 1 cut(s) 1107
BseNI ACTGG 1 cut(s) 1176
BsePI GCGCGC 1 cut(s) 37
BseRI GAGGAG 3 cut(s) 496, 699, 899
BseXI GCAGC 4 cut(s) 175, 1071, 1133, 1270
Bsh1236I CGCG 3 cut(s) 37, 39, 141
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 5 cut(s) 737, 817, 1068, 1218, 1347
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 833
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 3 cut(s) 178, 198, 217
BslFI GGGAC 4 cut(s) 471, 660, 1144, 1179
BslI CCNNNNNNNGG 5 cut(s) 114, 307, 683, 813, 1098
BsmAI GTCTC 4 cut(s) 7, 148, 681, 1289
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 4 cut(s) 471, 660, 1144, 1179
BsnI GGCC 5 cut(s) 737, 817, 1068, 1218, 1347
BsoBI CYCGRG 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 1270
Bsp1286I GDGCHC 1 cut(s) 833
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 5 cut(s) 231, 264, 613, 1324, 1338
Bsp19I CCATGG 1 cut(s) 1342
BspACI CCGC 3 cut(s) 42, 139, 153
BspANI GGCC 5 cut(s) 737, 817, 1068, 1218, 1347
BspCNI CTCAG 1 cut(s) 1106
BspFNI CGCG 3 cut(s) 37, 39, 141
BspLI GGNNCC 4 cut(s) 86, 648, 1348, 1431
BspMI ACCTGC 2 cut(s) 855, 1441
BspPI GGATC 3 cut(s) 272, 1332, 1333
BspT104I TTCGAA 1 cut(s) 1270
BspTI CTTAAG 2 cut(s) 398, 848
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 1 cut(s) 1176
BssECI CCNNGG 4 cut(s) 80, 113, 1342, 1350
BssHII GCGCGC 1 cut(s) 37
BssMI GATC 5 cut(s) 231, 264, 613, 1324, 1338
BssT1I CCWWGG 2 cut(s) 1342, 1350
Bst2UI CCWGG 3 cut(s) 570, 651, 729
Bst6I CTCTTC 2 cut(s) 790, 1377
BstAFI CTTAAG 2 cut(s) 398, 848
BstAUI TGTACA 1 cut(s) 747
BstBI TTCGAA 1 cut(s) 1270
BstC8I GCNNGC 5 cut(s) 39, 603, 1006, 1044, 1288
BstDEI CTNAG 2 cut(s) 1093, 1320
BstDSI CCRYGG 1 cut(s) 1342
BstFNI CGCG 3 cut(s) 37, 39, 141
BstH2I RGCGCY 2 cut(s) 30, 121
BstHHI GCGC 4 cut(s) 29, 39, 41, 120
BstKTI GATC 5 cut(s) 234, 267, 616, 1327, 1341
BstMAI GTCTC 4 cut(s) 7, 148, 681, 1289
BstMBI GATC 5 cut(s) 231, 264, 613, 1324, 1338
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 1065, 1121
BstNI CCWGG 3 cut(s) 570, 651, 729
BstNSI RCATGY 2 cut(s) 605, 1290
BstSCI CCNGG 4 cut(s) 216, 568, 649, 727
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 3 cut(s) 37, 39, 141
BstV1I GCAGC 4 cut(s) 175, 1071, 1133, 1270
BstX2I RGATCY 1 cut(s) 1324
BstXI CCANNNNNNTGG 1 cut(s) 796
BstYI RGATCY 1 cut(s) 1324
BsuRI GGCC 5 cut(s) 737, 817, 1068, 1218, 1347
BtgI CCRYGG 1 cut(s) 1342
BtsIMutI CAGTG 2 cut(s) 1305, 1404
BveI ACCTGC 2 cut(s) 855, 1441
Cac8I GCNNGC 5 cut(s) 39, 603, 1006, 1044, 1288
CfoI GCGC 4 cut(s) 29, 39, 41, 120
Cfr13I GGNCC 5 cut(s) 647, 725, 736, 1066, 1346
CseI GACGC 1 cut(s) 130
Csp6I GTAC 4 cut(s) 403, 519, 748, 1179
CspCI CAANNNNNGTGG 2 cut(s) 807, 842
CviQI GTAC 4 cut(s) 403, 519, 748, 1179
DdeI CTNAG 2 cut(s) 1093, 1320
DpnI GATC 5 cut(s) 233, 266, 615, 1326, 1340
DpnII GATC 5 cut(s) 231, 264, 613, 1324, 1338
EaeI YGGCCR 1 cut(s) 815
Eam1104I CTCTTC 2 cut(s) 790, 1377
EarI CTCTTC 2 cut(s) 790, 1377
Eco130I CCWWGG 2 cut(s) 1342, 1350
Eco147I AGGCCT 1 cut(s) 1218
Eco32I GATATC 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 647, 725
Eco57I CTGAAG 1 cut(s) 1137
Eco88I CYCGRG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 568, 649, 727
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 1342, 1350
EcoT22I ATGCAT 1 cut(s) 1292
ErhI CCWWGG 2 cut(s) 1342, 1350
Esp3I CGTCTC 1 cut(s) 148
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 381, 413
FaqI GGGAC 4 cut(s) 471, 660, 1144, 1179
FauNDI CATATG 1 cut(s) 269
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 42, 153, 189, 1085, 1122, 1284
Fsp4HI GCNGC 6 cut(s) 42, 153, 189, 1085, 1122, 1284
FspBI CTAG 4 cut(s) 90, 558, 1220, 1259
GlaI GCGC 4 cut(s) 28, 38, 40, 119
GluI GCNGC 6 cut(s) 42, 153, 189, 1085, 1122, 1284
HaeII RGCGCY 2 cut(s) 30, 121
HaeIII GGCC 5 cut(s) 737, 817, 1068, 1218, 1347
HapII CCGG 3 cut(s) 178, 198, 217
HgaI GACGC 1 cut(s) 130
HhaI GCGC 4 cut(s) 29, 39, 41, 120
Hin6I GCGC 4 cut(s) 27, 37, 39, 118
HinP1I GCGC 4 cut(s) 27, 37, 39, 118
HindIII AAGCTT 1 cut(s) 1421
HinfI GANTC 6 cut(s) 15, 129, 226, 484, 761, 782
HpaII CCGG 3 cut(s) 178, 198, 217
HphI GGTGA 2 cut(s) 260, 623
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 4 cut(s) 225, 231, 1096, 1161
Hpy188III TCNNGA 6 cut(s) 208, 437, 530, 677, 1030, 1427
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 448, 674, 1156
HpyCH4V TGCA 5 cut(s) 974, 1008, 1205, 1286, 1290
HpyF10VI GCNNNNNNNGC 2 cut(s) 1065, 1121
HpyF3I CTNAG 2 cut(s) 1093, 1320
HspAI GCGC 4 cut(s) 27, 37, 39, 118
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 231, 264, 613, 1324, 1338
LmnI GCTCC 2 cut(s) 180, 700
Lsp1109I GCAGC 4 cut(s) 175, 1071, 1133, 1270
LweI GCATC 2 cut(s) 343, 952
MaeI CTAG 4 cut(s) 90, 558, 1220, 1259
MaeIII GTNAC 3 cut(s) 370, 1135, 1152
MalI GATC 5 cut(s) 233, 266, 615, 1326, 1340
MboI GATC 5 cut(s) 231, 264, 613, 1324, 1338
MboII GAAGA 8 cut(s) 45, 48, 51, 54, 589, 777, 932, 1394
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 1324
MhlI GDGCHC 1 cut(s) 833
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 4 cut(s) 20, 498, 843, 1235
MluNI TGGCCA 1 cut(s) 817
MlyI GAGTC 5 cut(s) 9, 138, 493, 770, 776
MmeI TCCRAC 1 cut(s) 1257
Mox20I TGGCCA 1 cut(s) 817
Mph1103I ATGCAT 1 cut(s) 1292
MscI TGGCCA 1 cut(s) 817
MseI TTAA 4 cut(s) 399, 705, 849, 870
MslI CAYNNNNRTG 1 cut(s) 794
Msp20I TGGCCA 1 cut(s) 817
MspCI CTTAAG 2 cut(s) 398, 848
MspI CCGG 3 cut(s) 178, 198, 217
MspR9I CCNGG 4 cut(s) 218, 570, 651, 729
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 3 cut(s) 570, 651, 729
MvnI CGCG 3 cut(s) 37, 39, 141
MwoI GCNNNNNNNGC 2 cut(s) 1065, 1121
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 1342
NdeI CATATG 1 cut(s) 269
NdeII GATC 5 cut(s) 231, 264, 613, 1324, 1338
NlaIV GGNNCC 4 cut(s) 86, 648, 1348, 1431
NmeAIII GCCGAG 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 1292
NspI RCATGY 2 cut(s) 605, 1290
NspV TTCGAA 1 cut(s) 1270
PaeI GCATGC 2 cut(s) 605, 1290
PauI GCGCGC 1 cut(s) 37
PceI AGGCCT 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 813
PkrI GCNGC 6 cut(s) 43, 154, 190, 1086, 1123, 1285
Ple19I CGATCG 1 cut(s) 234
PleI GAGTC 5 cut(s) 9, 137, 492, 769, 776
PpsI GAGTC 5 cut(s) 9, 137, 492, 769, 776
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 3 cut(s) 568, 649, 727
PspGI CCWGG 3 cut(s) 568, 649, 727
PspN4I GGNNCC 4 cut(s) 86, 648, 1348, 1431
PspPI GGNCC 5 cut(s) 647, 725, 736, 1066, 1346
PspPPI RGGWCCY 1 cut(s) 725
PsuI RGATCY 1 cut(s) 1324
PteI GCGCGC 1 cut(s) 37
PvuI CGATCG 1 cut(s) 234
RsaI GTAC 4 cut(s) 404, 520, 749, 1180
RsaNI GTAC 4 cut(s) 403, 519, 748, 1179
RseI CAYNNNNRTG 1 cut(s) 794
SaqAI TTAA 4 cut(s) 399, 705, 849, 870
SatI GCNGC 6 cut(s) 42, 153, 189, 1085, 1122, 1284
Sau3AI GATC 5 cut(s) 231, 264, 613, 1324, 1338
Sau96I GGNCC 5 cut(s) 647, 725, 736, 1066, 1346
SchI GAGTC 5 cut(s) 9, 138, 493, 770, 776
ScrFI CCNGG 4 cut(s) 218, 570, 651, 729
SduI GDGCHC 1 cut(s) 833
SfaNI GCATC 2 cut(s) 343, 952
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 1270
SinI GGWCC 2 cut(s) 647, 725
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 4 cut(s) 398, 826, 848, 1047
SmoI CTYRAG 4 cut(s) 398, 826, 848, 1047
SphI GCATGC 2 cut(s) 605, 1290
Sse9I AATT 4 cut(s) 20, 498, 843, 1235
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 3 cut(s) 42, 139, 153
SspI AATATT 1 cut(s) 1200
SspMI CTAG 4 cut(s) 90, 558, 1220, 1259
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 4 cut(s) 216, 568, 649, 727
StyI CCWWGG 2 cut(s) 1342, 1350
TaqI TCGA 7 cut(s) 207, 237, 622, 769, 794, 882, 1270
TasI AATT 4 cut(s) 20, 498, 843, 1235
TatI WGTACW 3 cut(s) 402, 747, 1178
TauI GCSGC 2 cut(s) 44, 155
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 4 cut(s) 399, 705, 849, 870
Tru9I TTAA 4 cut(s) 399, 705, 849, 870
TscAI CASTG 2 cut(s) 1305, 1404
TseI GCWGC 4 cut(s) 188, 1084, 1121, 1283
TspDTI ATGAA 3 cut(s) 267, 456, 467
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 2 cut(s) 1305, 1404
Van91I CCANNNNNTGG 1 cut(s) 813
Vha464I CTTAAG 2 cut(s) 398, 848
VpaK11BI GGWCC 2 cut(s) 647, 725
XceI RCATGY 2 cut(s) 605, 1290
XspI CTAG 4 cut(s) 90, 558, 1220, 1259
Zsp2I ATGCAT 1 cut(s) 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.