Prupe.3G288200_v2.0.a1

Isocitrate dehydrogenase NADP

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
25956736 .. 25961359
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G288200.2

Sequence Viewer

Length: 1449 bp
ATGCTAAGAGCGAGACTGCAATTGAGCGCCATGTCGCGCGCTGCGATGATATCGTCGTCAGCTTCGTCCTCTGTAGCCATGAGAAACCCTAGCTTGTCCTTCTCGTCGTCCCCGAGACTCTTCAATGGAGTGCCTGTTGGGAACCGTGTTTCGTTCTCCGTTCGCTTTAGTCATACTTCGTTGCGATGCTACGCTTCGTCTCCCGGCTTGGATAAAATTCGGGTTCAGAATCCTATTGTTGAAATGGACGGTGATGAAATGACGAGGATCATATGGAAAACGATTAAAGATAAACTTATCTTTCCCCATCTGGATTTGGATATAAAGTATTATGATTTAGGAATTTTGAACCGTGATGCTACTGATGACCGAGTTACAGTGGAGAGTGCCGAAGCCGCTCTTAAGTACAATGTTGCCGTGAAATGTGCTACAATAACTCCTGATGAGACCAGAGTGAAGGAGTTTGGGCTGAAATCAATGTGGAGGAGTCCCAATGGCACAATTAGAAACATTCTAAACGGTACTGTTTTCCGTGAACCTATCCTATGCAGAAACATCCCTAGAATAGTTCCTGGTTGGAAAAAACCCATATGTATTGGTAGGCATGCCTTTGGTGATCAGTATCGAGCCACTGATACAGTTATTAAAGGGCCGGGAAAGCTTAAAATGGTTTTTGTCCCAGAAGGTGGGGATGCCCCTGTGGAACTTGATGTTTATGATTTCAAAGGGCCTGGTGTGGCCCTTTCTATGTATAACGTTGATGAGTCTATTCGAGCTTTTGCTGACTCGTCAATGTCGTTCGCATTTTCCAAGAAGTGGCCACTATACTTGAGCACCAAAAACACAATTCTTAAGAAATATGATGGCAGGTTTAAGGACATATTTGAGGAGGTTTATGACGAGAAGTGGAAGCAGAAGTTTGAAGAAAACTCTATATGGTATGAACATCGGCTAATAGATGACATGGTGGCTTATGCACTCAAAAGTGAGGGTGGTTATGTTTGGGCTTGCAAAAATTATGATGGAGATGTCCAGAGTGATTTGCTTGCTCAAGGATTTGGCTCTTTGGGCCTCATGGCTTCTGTGTTGTTATCCTCAGATGGGAAGACAATAGAAGCTGAAGCAGCTCATGGGACAGTAACTCGTCATTTTCGGTTACATCAAAATGGACAAGAAACCAGTACAAACAGTATTGCTTCAATATTTGCATGGACACGAGGCTTAGAGCACAGGGCCAAATTAGATAAAAATGATAGGTTGCTGGATTTTGTTCGAAAGTTGGAGGCTGCATGCATTGAGACAGTGGAGGCAGGAAAAATGACCAAGGATCTTGCCATTTTGACCCATGGTTCCAAGGTATCGAGGGAGTTCTACTTGAACACTGAAGAATTTATTGACGCTGTTGCAAAGAATGTTGAGCAAAAGCTTCTGGAACCTGCTGTGGTTTAA

Protein Analysis

483

Amino Acids

54.12

Weight (kDa)

8.51

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 858, 1444
AccB7I CCANNNNNTGG 2 cut(s) 686, 816
AccBSI CCGCTC 1 cut(s) 398
AccII CGCG 2 cut(s) 37, 39
AciI CCGC 1 cut(s) 396
AclI AACGTT 1 cut(s) 756
AclWI GGATC 2 cut(s) 275, 1335
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 3 cut(s) 216, 342, 1388
AcuI CTGAAG 2 cut(s) 1140, 1404
AfaI GTAC 3 cut(s) 407, 523, 1183
AfiI CCNNNNNNNGG 3 cut(s) 686, 816, 1101
AflII CTTAAG 2 cut(s) 401, 851
AgsI TTSAA 7 cut(s) 124, 242, 349, 724, 923, 1200, 1378
AjnI CCWGG 2 cut(s) 571, 730
AluBI AGCT 7 cut(s) 62, 93, 661, 776, 1118, 1127, 1426
AluI AGCT 7 cut(s) 62, 93, 661, 776, 1118, 1127, 1426
Alw21I GWGCWC 2 cut(s) 836, 1230
Alw26I GTCTC 5 cut(s) 7, 109, 204, 440, 1292
AlwI GGATC 2 cut(s) 275, 1335
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 6 cut(s) 650, 728, 738, 818, 1069, 1233
ApeKI GCWGC 3 cut(s) 41, 1124, 1286
ApoI RAATTY 3 cut(s) 216, 342, 1388
AspLEI GCGC 3 cut(s) 29, 39, 41
AspS9I GGNCC 5 cut(s) 650, 728, 739, 1069, 1233
AsuC2I CCSGG 2 cut(s) 204, 654
AsuHPI GGTGA 2 cut(s) 263, 626
AsuII TTCGAA 1 cut(s) 1273
AvaI CYCGRG 1 cut(s) 112
BalI TGGCCA 1 cut(s) 820
BauI CACGAG 1 cut(s) 1215
BbsI GAAGAC 1 cut(s) 1112
Bbv12I GWGCWC 2 cut(s) 836, 1230
BbvI GCAGC 3 cut(s) 28, 1136, 1273
BccI CCATC 4 cut(s) 315, 857, 1016, 1094
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 2 cut(s) 573, 732
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 2 cut(s) 204, 654
BcoDI GTCTC 5 cut(s) 7, 109, 204, 440, 1292
BfaI CTAG 2 cut(s) 90, 561
BfmI CTRYAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 30
BfrI CTTAAG 2 cut(s) 401, 851
BfuAI ACCTGC 2 cut(s) 858, 1444
BisI GCNGC 4 cut(s) 42, 396, 1125, 1287
BlsI GCNGC 4 cut(s) 43, 397, 1126, 1288
Bme1390I CCNGG 4 cut(s) 204, 573, 654, 732
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 5 cut(s) 650, 728, 739, 1069, 1233
BmiI GGNNCC 3 cut(s) 143, 1351, 1434
BmrFI CCNGG 4 cut(s) 204, 573, 654, 732
BmsI GCATC 3 cut(s) 176, 346, 682
BpiI GAAGAC 1 cut(s) 1112
Bpu14I TTCGAA 1 cut(s) 1273
BpuEI CTTGAG 2 cut(s) 850, 1035
BpuMI CCSGG 2 cut(s) 204, 654
BsaBI GATNNNNATC 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 3 cut(s) 1323, 1345, 1353
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 421, 451
Bsc4I CCNNNNNNNGG 3 cut(s) 686, 816, 1101
Bse1I ACTGG 1 cut(s) 1179
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 2 cut(s) 573, 732
BseDI CCNNGG 3 cut(s) 1323, 1345, 1353
BseGI GGATG 2 cut(s) 555, 697
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 3 cut(s) 686, 816, 1101
BseMII CTCAG 1 cut(s) 1110
BseNI ACTGG 1 cut(s) 1179
BsePI GCGCGC 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 499, 902
BseXI GCAGC 3 cut(s) 28, 1136, 1273
Bsh1236I CGCG 2 cut(s) 37, 39
BshFI GGCC 6 cut(s) 652, 730, 740, 820, 1071, 1235
BsiHKAI GWGCWC 2 cut(s) 836, 1230
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 204, 653
BslFI GGGAC 4 cut(s) 94, 474, 662, 1147
BslI CCNNNNNNNGG 3 cut(s) 686, 816, 1101
BsmAI GTCTC 5 cut(s) 7, 109, 204, 440, 1292
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 4 cut(s) 94, 474, 662, 1147
BsnI GGCC 6 cut(s) 652, 730, 740, 820, 1071, 1235
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 1273
Bsp1286I GDGCHC 2 cut(s) 836, 1230
Bsp143I GATC 3 cut(s) 267, 616, 1327
Bsp19I CCATGG 1 cut(s) 1345
BspACI CCGC 1 cut(s) 396
BspANI GGCC 6 cut(s) 652, 730, 740, 820, 1071, 1235
BspCNI CTCAG 1 cut(s) 1109
BspFNI CGCG 2 cut(s) 37, 39
BspLI GGNNCC 3 cut(s) 143, 1351, 1434
BspMI ACCTGC 2 cut(s) 858, 1444
BspPI GGATC 2 cut(s) 275, 1335
BspT104I TTCGAA 1 cut(s) 1273
BspTI CTTAAG 2 cut(s) 401, 851
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 398
BsrI ACTGG 1 cut(s) 1179
BssECI CCNNGG 3 cut(s) 1323, 1345, 1353
BssHII GCGCGC 1 cut(s) 37
BssMI GATC 3 cut(s) 267, 616, 1327
BssSI CACGAG 1 cut(s) 1215
BssT1I CCWWGG 3 cut(s) 1323, 1345, 1353
Bst2BI CACGAG 1 cut(s) 1215
Bst2UI CCWGG 2 cut(s) 573, 732
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 2 cut(s) 401, 851
BstBI TTCGAA 1 cut(s) 1273
BstC8I GCNNGC 5 cut(s) 39, 606, 1009, 1047, 1291
BstDEI CTNAG 3 cut(s) 5, 1096, 1222
BstDSI CCRYGG 1 cut(s) 1345
BstF5I GGATG 2 cut(s) 555, 697
BstFNI CGCG 2 cut(s) 37, 39
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 3 cut(s) 29, 39, 41
BstKTI GATC 3 cut(s) 270, 619, 1330
BstMAI GTCTC 5 cut(s) 7, 109, 204, 440, 1292
BstMBI GATC 3 cut(s) 267, 616, 1327
BstMWI GCNNNNNNNGC 4 cut(s) 395, 658, 1068, 1124
BstNI CCWGG 2 cut(s) 573, 732
BstNSI RCATGY 2 cut(s) 608, 1293
BstSCI CCNGG 4 cut(s) 202, 571, 652, 730
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 2 cut(s) 37, 39
BstV1I GCAGC 3 cut(s) 28, 1136, 1273
BstV2I GAAGAC 1 cut(s) 1112
BstX2I RGATCY 1 cut(s) 1327
BstYI RGATCY 1 cut(s) 1327
BsuRI GGCC 6 cut(s) 652, 730, 740, 820, 1071, 1235
BtgI CCRYGG 1 cut(s) 1345
BtgZI GCGATG 2 cut(s) 59, 199
BtsCI GGATG 2 cut(s) 555, 697
BtsIMutI CAGTG 4 cut(s) 384, 630, 1308, 1380
BveI ACCTGC 2 cut(s) 858, 1444
Cac8I GCNNGC 5 cut(s) 39, 606, 1009, 1047, 1291
CfoI GCGC 3 cut(s) 29, 39, 41
Cfr13I GGNCC 5 cut(s) 650, 728, 739, 1069, 1233
CseI GACGC 1 cut(s) 1406
Csp6I GTAC 3 cut(s) 406, 522, 1182
CspCI CAANNNNNGTGG 2 cut(s) 810, 845
CviAII CATG 9 cut(s) 31, 79, 605, 964, 1075, 1130, 1209, 1290, 1346
CviQI GTAC 3 cut(s) 406, 522, 1182
DdeI CTNAG 3 cut(s) 5, 1096, 1222
DpnI GATC 3 cut(s) 269, 618, 1329
DpnII GATC 3 cut(s) 267, 616, 1327
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 3 cut(s) 1323, 1345, 1353
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 1140, 1404
Eco88I CYCGRG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 571, 730
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 3 cut(s) 1323, 1345, 1353
EcoT22I ATGCAT 1 cut(s) 1295
ErhI CCWWGG 3 cut(s) 1323, 1345, 1353
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 9 cut(s) 34, 82, 608, 967, 1078, 1133, 1212, 1293, 1349
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 384, 416
FaqI GGGAC 4 cut(s) 94, 474, 662, 1147
FatI CATG 9 cut(s) 30, 78, 604, 963, 1074, 1129, 1208, 1289, 1345
FauNDI CATATG 2 cut(s) 272, 590
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 4 cut(s) 42, 396, 1125, 1287
FokI GGATG 2 cut(s) 542, 704
Fsp4HI GCNGC 4 cut(s) 42, 396, 1125, 1287
FspBI CTAG 2 cut(s) 90, 561
GlaI GCGC 3 cut(s) 28, 38, 40
GluI GCNGC 4 cut(s) 42, 396, 1125, 1287
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 6 cut(s) 652, 730, 740, 820, 1071, 1235
HapII CCGG 2 cut(s) 204, 653
HgaI GACGC 1 cut(s) 1406
HhaI GCGC 3 cut(s) 29, 39, 41
Hin1II CATG 9 cut(s) 34, 82, 608, 967, 1078, 1133, 1212, 1293, 1349
Hin6I GCGC 3 cut(s) 27, 37, 39
HinP1I GCGC 3 cut(s) 27, 37, 39
HindIII AAGCTT 2 cut(s) 659, 1424
HinfI GANTC 5 cut(s) 117, 229, 487, 764, 785
HpaII CCGG 2 cut(s) 204, 653
HphI GGTGA 2 cut(s) 263, 626
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 2 cut(s) 228, 1099
Hpy188III TCNNGA 4 cut(s) 311, 440, 1033, 1430
Hpy8I GTNNAC 1 cut(s) 536
Hpy99I CGWCG 2 cut(s) 58, 109
HpyAV CCTTC 3 cut(s) 109, 451, 677
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 8 cut(s) 19, 549, 977, 1011, 1208, 1289, 1293, 1406
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 658, 1068, 1124
HpyF3I CTNAG 3 cut(s) 5, 1096, 1222
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 9 cut(s) 34, 82, 608, 967, 1078, 1133, 1212, 1293, 1349
HspAI GCGC 3 cut(s) 27, 37, 39
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 267, 616, 1327
Lsp1109I GCAGC 3 cut(s) 28, 1136, 1273
LweI GCATC 3 cut(s) 176, 346, 682
MaeI CTAG 2 cut(s) 90, 561
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 3 cut(s) 373, 1138, 1155
MalI GATC 3 cut(s) 269, 618, 1329
MbiI CCGCTC 1 cut(s) 398
MboI GATC 3 cut(s) 267, 616, 1327
MboII GAAGA 4 cut(s) 112, 935, 1117, 1397
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 1327
MhlI GDGCHC 2 cut(s) 836, 1230
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 8 cut(s) 20, 216, 342, 501, 846, 1015, 1238, 1388
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 4 cut(s) 111, 496, 773, 779
MmeI TCCRAC 2 cut(s) 557, 1260
Mox20I TGGCCA 1 cut(s) 820
Mph1103I ATGCAT 1 cut(s) 1295
MscI TGGCCA 1 cut(s) 820
MseI TTAA 7 cut(s) 285, 402, 645, 663, 852, 873, 1447
MslI CAYNNNNRTG 1 cut(s) 1164
Msp20I TGGCCA 1 cut(s) 820
MspCI CTTAAG 2 cut(s) 401, 851
MspI CCGG 2 cut(s) 204, 653
MspR9I CCNGG 4 cut(s) 204, 573, 654, 732
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 2 cut(s) 573, 732
MvnI CGCG 2 cut(s) 37, 39
MwoI GCNNNNNNNGC 4 cut(s) 395, 658, 1068, 1124
NciI CCSGG 2 cut(s) 204, 654
NcoI CCATGG 1 cut(s) 1345
NdeI CATATG 2 cut(s) 272, 590
NdeII GATC 3 cut(s) 267, 616, 1327
NlaIII CATG 9 cut(s) 34, 82, 608, 967, 1078, 1133, 1212, 1293, 1349
NlaIV GGNNCC 3 cut(s) 143, 1351, 1434
NsiI ATGCAT 1 cut(s) 1295
NspI RCATGY 2 cut(s) 608, 1293
NspV TTCGAA 1 cut(s) 1273
PaeI GCATGC 2 cut(s) 608, 1293
PauI GCGCGC 1 cut(s) 37
PcsI WCGNNNNNNNCGW 4 cut(s) 41, 62, 110, 794
PfeI GAWTC 1 cut(s) 229
PflMI CCANNNNNTGG 2 cut(s) 686, 816
PkrI GCNGC 4 cut(s) 43, 397, 1126, 1288
PleI GAGTC 4 cut(s) 111, 495, 772, 779
PpsI GAGTC 4 cut(s) 111, 495, 772, 779
Psp1406I AACGTT 1 cut(s) 756
Psp6I CCWGG 2 cut(s) 571, 730
PspGI CCWGG 2 cut(s) 571, 730
PspN4I GGNNCC 3 cut(s) 143, 1351, 1434
PspPI GGNCC 5 cut(s) 650, 728, 739, 1069, 1233
PsuI RGATCY 1 cut(s) 1327
PteI GCGCGC 1 cut(s) 37
RsaI GTAC 3 cut(s) 407, 523, 1183
RsaNI GTAC 3 cut(s) 406, 522, 1182
RseI CAYNNNNRTG 1 cut(s) 1164
SaqAI TTAA 7 cut(s) 285, 402, 645, 663, 852, 873, 1447
SatI GCNGC 4 cut(s) 42, 396, 1125, 1287
Sau3AI GATC 3 cut(s) 267, 616, 1327
Sau96I GGNCC 5 cut(s) 650, 728, 739, 1069, 1233
SchI GAGTC 4 cut(s) 111, 496, 773, 779
ScrFI CCNGG 4 cut(s) 204, 573, 654, 732
SduI GDGCHC 2 cut(s) 836, 1230
SfaNI GCATC 3 cut(s) 176, 346, 682
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 1273
SmiMI CAYNNNNRTG 1 cut(s) 1164
SmlI CTYRAG 4 cut(s) 401, 829, 851, 1050
SmoI CTYRAG 4 cut(s) 401, 829, 851, 1050
SphI GCATGC 2 cut(s) 608, 1293
Sse9I AATT 8 cut(s) 20, 216, 342, 501, 846, 1015, 1238, 1388
SsiI CCGC 1 cut(s) 396
SspI AATATT 1 cut(s) 1203
SspMI CTAG 2 cut(s) 90, 561
StyD4I CCNGG 4 cut(s) 202, 571, 652, 730
StyI CCWWGG 3 cut(s) 1323, 1345, 1353
TaiI ACGT 1 cut(s) 759
TaqI TCGA 4 cut(s) 625, 772, 1273, 1361
TaqII GACCGA 1 cut(s) 384
TasI AATT 8 cut(s) 20, 216, 342, 501, 846, 1015, 1238, 1388
TatI WGTACW 2 cut(s) 405, 1181
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 7 cut(s) 285, 402, 645, 663, 852, 873, 1447
Tru9I TTAA 7 cut(s) 285, 402, 645, 663, 852, 873, 1447
TscAI CASTG 4 cut(s) 384, 637, 1308, 1387
TseI GCWGC 3 cut(s) 41, 1124, 1286
TspDTI ATGAA 2 cut(s) 270, 957
TspGWI ACGGA 2 cut(s) 148, 521
TspRI CASTG 4 cut(s) 384, 637, 1308, 1387
Van91I CCANNNNNTGG 2 cut(s) 686, 816
Vha464I CTTAAG 2 cut(s) 401, 851
XapI RAATTY 3 cut(s) 216, 342, 1388
XceI RCATGY 2 cut(s) 608, 1293
XspI CTAG 2 cut(s) 90, 561
Zsp2I ATGCAT 1 cut(s) 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.