FvH4_6g51160

High affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37957537 .. 37960338
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51160.t1

Sequence Viewer

Length: 1416 bp
ATGGAAGACGATCACCAAGTTCCACTAAAGAAAGCTGACCCTGACCATCATCTCTTTGCTTTACCAGTTGATGAAGATGGAAAAGCCACAGAATTCAGACCATTCTCCATGGCATCACCACACATGCGAGCTTTCCACCTCGCATGGTTGTCGTTGTTCTCCTGCTTCTTCTCCACCTTCTCCATCCCTCCACTCATTGCCGTCATCCGCGACGATCTCCACCTCACCGAAACACATACCTCACGCGCCGCCATCGCCGCCTTCCTCGGCTCCATCTTCTCCCGCATTGCCATGGGCCCCATCTGCGATGTCCTCGGCCCACGCGTCGCCTCCGCCTCCCTCTCCCTCCTCACCTCCCCCATCATCCTCGCCACCGGCCTCGTCTCCTCCCCAAACGCCTTCATCGCCGTACGCTTCCTCGTCGGGTTCTCCCTCGCCAACTTCGTCGCCAACCAGTTCTGGATGAGCTGCATGTTCTCGGGATGCGTCGTAGGCCTCGCCAACGGTGTCTCCGCCGGCTGGGCCAACATGGGCTCCGGCGCCACCCAGCTCGTCATGCCACTAATCTACTCCTTCATCATCACAGCATTCAACTTCCCATCCTCAACTGCATGGCGTCTCGCATTCATAGTCCCAGCCGTGTTGCAGGCCAGCACAGCGGTACTGGTCCTGACCTACGGGCAGGACCTACCTTCCGGGAGCTACAGACGCGCATGTAGCTCCGAGAAGGCGTCAAAAAACAAAGACAGTTTTTTCGAGGTGTTGTTCAACGGGGTTAAAAACTACAGAGGTTGGATCTTGGCCTTGATATACGGGTTTTGCTTCGGTGTGGAGTTGACAACTGACAACATCATTGCTCAGTACTTCTACGACCGGTTCGGCGTGAACATTCAGGTGGCCGGAACCATAGCTTCCAGCTTCGGACTGGCGAACTTCTTTTCGAGGCCAAGCGGGGGTTTGATTTCCGACTTGTTGGGGAGGAGATTCGGGATGAGAGGGAGGCTGTGGGGGTTGTGGGCGACGCAGACGGTGGCGGGTTTGCTGTGCTTGCTGCTCGGACGAGTGGACTCGCTCTGGGGCTCCATACTTGTCATGTGCGTCTTCTCTGTGTTTGTTCAGGCTGCGGCAGGACTCACGTTTGGTGTCGTTCCATTTGTTTCCAAAAGGTCACTAGGAGTGATTTCAGGTATAACAGGCAGTGGAGGAACCATGGGGGCTGTGATAACCCAGCTCTTACTGTTTTCAGGCTCTACATACTCAAAGCAGACAGGCATTTCTCTAATGGGAATCATGATGATCGTCTGTACTCTCCCACTCACACTCATCTACTTCCCTCAATGGGGTGGAATGCTATGCGGCCCTTCCTATAAGCGCGATCTCGATCCAGAAGCAGACCATTATCGCTTGCTCGAATAG

Protein Analysis

472

Amino Acids

50.95

Weight (kDa)

8.5

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 49 - 408 2.1e-21 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccII CGCG 5 cut(s) 210, 246, 324, 711, 1374
AclWI GGATC 2 cut(s) 803, 1376
AcoI YGGCCR 1 cut(s) 897
AcsI RAATTY 1 cut(s) 92
AcyI GRCGYC 3 cut(s) 540, 616, 731
AfaI GTAC 4 cut(s) 411, 663, 863, 1306
AfiI CCNNNNNNNGG 4 cut(s) 519, 953, 1339, 1340
AflIII ACRYGT 1 cut(s) 322
AgeI ACCGGT 1 cut(s) 873
AgsI TTSAA 2 cut(s) 592, 769
AluBI AGCT 9 cut(s) 35, 131, 468, 550, 702, 720, 911, 918, 1231
AluI AGCT 9 cut(s) 35, 131, 468, 550, 702, 720, 911, 918, 1231
Alw26I GTCTC 3 cut(s) 388, 514, 623
AlwI GGATC 2 cut(s) 803, 1376
Ama87I CYCGRG 1 cut(s) 478
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 3 cut(s) 468, 1051, 1121
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
AsiGI ACCGGT 1 cut(s) 873
AspLEI GCGC 4 cut(s) 248, 542, 713, 1374
AspS9I GGNCC 7 cut(s) 295, 296, 317, 522, 667, 685, 1358
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 4 cut(s) 5, 108, 217, 343
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 2 cut(s) 667, 685
BaeGI GKGCMC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 539
BanII GRGCYC 3 cut(s) 299, 536, 1082
BbsI GAAGAC 2 cut(s) 12, 1093
BbvI GCAGC 3 cut(s) 455, 1038, 1108
BccI CCATC 8 cut(s) 54, 71, 191, 260, 281, 308, 368, 607
BceAI ACGGC 3 cut(s) 185, 392, 623
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 3 cut(s) 388, 514, 623
BfaI CTAG 1 cut(s) 1172
BfmI CTRYAG 2 cut(s) 703, 784
BfoI RGCGCY 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 521
BisI GCNGC 7 cut(s) 249, 258, 469, 1052, 1122, 1125, 1357
BlsI GCNGC 7 cut(s) 250, 259, 470, 1053, 1123, 1126, 1358
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 1 cut(s) 697
Bme18I GGWCC 2 cut(s) 667, 685
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 7 cut(s) 295, 296, 317, 522, 667, 685, 1358
BmiI GGNNCC 8 cut(s) 271, 297, 298, 535, 541, 904, 1081, 1207
BmrFI CCNGG 1 cut(s) 697
BmsI GCATC 2 cut(s) 122, 473
BpiI GAAGAC 2 cut(s) 12, 1093
BpuMI CCSGG 1 cut(s) 697
BsaBI GATNNNNATC 1 cut(s) 1380
BsaHI GRCGYC 3 cut(s) 540, 616, 731
BsaJI CCNNGG 5 cut(s) 108, 265, 291, 313, 1209
BsaWI WCCGGW 1 cut(s) 873
BsaXI ACNNNNNCTCC 4 cut(s) 494, 518, 524, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 519, 953, 1339, 1340
Bse118I RCCGGY 3 cut(s) 374, 515, 873
Bse1I ACTGG 4 cut(s) 65, 454, 669, 930
Bse3DI GCAATG 3 cut(s) 195, 285, 852
Bse8I GATNNNNATC 1 cut(s) 1380
BseDI CCNNGG 5 cut(s) 108, 265, 291, 313, 1209
BseGI GGATG 7 cut(s) 183, 204, 363, 468, 488, 599, 996
BseJI GATNNNNATC 1 cut(s) 1380
BseLI CCNNNNNNNGG 4 cut(s) 519, 953, 1339, 1340
BseMI GCAATG 3 cut(s) 195, 285, 852
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 4 cut(s) 65, 454, 669, 930
BseRI GAGGAG 3 cut(s) 338, 376, 994
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 3 cut(s) 455, 1038, 1108
BseYI CCCAGC 4 cut(s) 519, 546, 634, 1227
Bsh1236I CGCG 5 cut(s) 210, 246, 324, 711, 1374
Bsh1285I CGRYCG 1 cut(s) 874
BshNI GGYRCC 1 cut(s) 539
BshTI ACCGGT 1 cut(s) 873
BsiEI CGRYCG 1 cut(s) 874
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 6 cut(s) 375, 516, 537, 696, 874, 900
BsiWI CGTACG 1 cut(s) 409
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 4 cut(s) 519, 953, 1339, 1340
BsmAI GTCTC 3 cut(s) 388, 514, 623
BsmBI CGTCTC 2 cut(s) 388, 623
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 3 cut(s) 587, 623, 1353
BsoBI CYCGRG 1 cut(s) 478
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 299, 536, 1082
Bsp143I GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
Bsp19I CCATGG 3 cut(s) 108, 291, 1209
BspCNI CTCAG 1 cut(s) 871
BspFNI CGCG 5 cut(s) 210, 246, 324, 711, 1374
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 8 cut(s) 271, 297, 298, 535, 541, 904, 1081, 1207
BspPI GGATC 2 cut(s) 803, 1376
BspT107I GGYRCC 1 cut(s) 539
BsrDI GCAATG 3 cut(s) 195, 285, 852
BsrFI RCCGGY 3 cut(s) 374, 515, 873
BsrI ACTGG 4 cut(s) 65, 454, 669, 930
BssAI RCCGGY 3 cut(s) 374, 515, 873
BssECI CCNNGG 5 cut(s) 108, 265, 291, 313, 1209
BssMI GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
BssNI GRCGYC 3 cut(s) 540, 616, 731
BssT1I CCWWGG 3 cut(s) 108, 291, 1209
Bst4CI ACNGT 4 cut(s) 506, 749, 1030, 1239
BstACI GRCGYC 3 cut(s) 540, 616, 731
BstC8I GCNNGC 6 cut(s) 129, 517, 648, 652, 1049, 1406
BstDEI CTNAG 1 cut(s) 858
BstDSI CCRYGG 3 cut(s) 108, 291, 1209
BstF5I GGATG 7 cut(s) 183, 204, 363, 468, 488, 599, 996
BstFNI CGCG 5 cut(s) 210, 246, 324, 711, 1374
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 4 cut(s) 248, 542, 713, 1374
BstKTI GATC 6 cut(s) 13, 217, 798, 1299, 1378, 1384
BstMAI GTCTC 3 cut(s) 388, 514, 623
BstMBI GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
BstMCI CGRYCG 1 cut(s) 874
BstNSI RCATGY 3 cut(s) 127, 475, 717
BstSCI CCNGG 1 cut(s) 695
BstSFI CTRYAG 2 cut(s) 703, 784
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 5 cut(s) 210, 246, 324, 711, 1374
BstV1I GCAGC 3 cut(s) 455, 1038, 1108
BstV2I GAAGAC 2 cut(s) 12, 1093
BstX2I RGATCY 1 cut(s) 795
BstYI RGATCY 1 cut(s) 795
BtgI CCRYGG 3 cut(s) 108, 291, 1209
BtgZI GCGATG 3 cut(s) 238, 321, 388
BtsCI GGATG 7 cut(s) 183, 204, 363, 468, 488, 599, 996
BtsI GCAGTG 1 cut(s) 1204
BtsIMutI CAGTG 1 cut(s) 1204
Cac8I GCNNGC 6 cut(s) 129, 517, 648, 652, 1049, 1406
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 4 cut(s) 248, 542, 713, 1374
Cfr10I RCCGGY 3 cut(s) 374, 515, 873
Cfr13I GGNCC 7 cut(s) 295, 296, 317, 522, 667, 685, 1358
CseI GACGC 7 cut(s) 313, 475, 605, 717, 720, 1030, 1087
Csp6I GTAC 4 cut(s) 410, 662, 862, 1305
CspAI ACCGGT 1 cut(s) 873
CviQI GTAC 4 cut(s) 410, 662, 862, 1305
DdeI CTNAG 1 cut(s) 858
DinI GGCGCC 1 cut(s) 541
DpnI GATC 6 cut(s) 12, 216, 797, 1298, 1377, 1383
DpnII GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
EaeI YGGCCR 1 cut(s) 897
EciI GGCGGA 2 cut(s) 322, 502
Eco130I CCWWGG 3 cut(s) 108, 291, 1209
Eco147I AGGCCT 1 cut(s) 495
Eco24I GRGCYC 3 cut(s) 299, 536, 1082
Eco47I GGWCC 2 cut(s) 667, 685
Eco88I CYCGRG 1 cut(s) 478
EcoO109I RGGNCCY 2 cut(s) 296, 685
EcoRI GAATTC 1 cut(s) 92
EcoT14I CCWWGG 3 cut(s) 108, 291, 1209
EcoT38I GRGCYC 3 cut(s) 299, 536, 1082
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
ErhI CCWWGG 3 cut(s) 108, 291, 1209
Esp3I CGTCTC 2 cut(s) 388, 623
FaqI GGGAC 1 cut(s) 617
FauI CCCGC 3 cut(s) 290, 944, 1027
Fnu4HI GCNGC 7 cut(s) 249, 258, 469, 1052, 1122, 1125, 1357
FokI GGATG 7 cut(s) 170, 191, 350, 475, 495, 586, 1003
FriOI GRGCYC 3 cut(s) 299, 536, 1082
Fsp4HI GCNGC 7 cut(s) 249, 258, 469, 1052, 1122, 1125, 1357
FspBI CTAG 1 cut(s) 1172
GlaI GCGC 4 cut(s) 247, 541, 712, 1373
GluI GCNGC 7 cut(s) 249, 258, 469, 1052, 1122, 1125, 1357
GsaI CCCAGC 4 cut(s) 523, 550, 638, 1231
HaeII RGCGCY 1 cut(s) 543
HapII CCGG 6 cut(s) 375, 516, 537, 696, 874, 900
HgaI GACGC 7 cut(s) 313, 475, 605, 717, 720, 1030, 1087
HhaI GCGC 4 cut(s) 248, 542, 713, 1374
Hin1I GRCGYC 3 cut(s) 540, 616, 731
Hin6I GCGC 4 cut(s) 246, 540, 711, 1372
HinP1I GCGC 4 cut(s) 246, 540, 711, 1372
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 4 cut(s) 984, 1067, 1131, 1287
HpaII CCGG 6 cut(s) 375, 516, 537, 696, 874, 900
HphI GGTGA 4 cut(s) 5, 108, 217, 343
Hpy166II GTNNAC 3 cut(s) 837, 886, 1066
Hpy188I TCNGA 5 cut(s) 98, 724, 923, 967, 1058
Hpy188III TCNNGA 7 cut(s) 460, 480, 670, 988, 1291, 1379, 1385
Hpy8I GTNNAC 3 cut(s) 837, 886, 1066
Hpy99I CGWCG 6 cut(s) 215, 329, 425, 449, 491, 1024
HpyAV CCTTC 7 cut(s) 187, 271, 409, 583, 702, 721, 1371
HpyCH4III ACNGT 4 cut(s) 506, 749, 1030, 1239
HpyCH4IV ACGT 1 cut(s) 1136
HpyCH4V TGCA 3 cut(s) 471, 611, 646
HpyF3I CTNAG 1 cut(s) 858
HpySE526I ACGT 1 cut(s) 1136
Hsp92I GRCGYC 3 cut(s) 540, 616, 731
HspAI GCGC 4 cut(s) 246, 540, 711, 1372
KasI GGCGCC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 515
KroNI GCCGGC 1 cut(s) 517
Kzo9I GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
LmnI GCTCC 5 cut(s) 275, 539, 699, 725, 1085
Lsp1109I GCAGC 3 cut(s) 455, 1038, 1108
LweI GCATC 2 cut(s) 122, 473
MaeI CTAG 1 cut(s) 1172
MaeII ACGT 1 cut(s) 1136
MaeIII GTNAC 1 cut(s) 1167
MalI GATC 6 cut(s) 12, 216, 797, 1298, 1377, 1383
MboI GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
MboII GAAGA 5 cut(s) 17, 86, 160, 268, 1093
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 3 cut(s) 299, 536, 1082
MluCI AATT 1 cut(s) 92
MluI ACGCGT 1 cut(s) 322
Mly113I GGCGCC 1 cut(s) 540
MlyI GAGTC 2 cut(s) 1061, 1125
MmeI TCCRAC 2 cut(s) 773, 990
MroNI GCCGGC 1 cut(s) 515
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 2 cut(s) 290, 893
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 6 cut(s) 375, 516, 537, 696, 874, 900
MspR9I CCNGG 1 cut(s) 697
Mva1269I GAATGC 3 cut(s) 587, 623, 1353
MvnI CGCG 5 cut(s) 210, 246, 324, 711, 1374
NaeI GCCGGC 1 cut(s) 517
NarI GGCGCC 1 cut(s) 540
NciI CCSGG 1 cut(s) 697
NcoI CCATGG 3 cut(s) 108, 291, 1209
NdeII GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
NgoMIV GCCGGC 1 cut(s) 515
NlaIV GGNNCC 8 cut(s) 271, 297, 298, 535, 541, 904, 1081, 1207
NmeAIII GCCGAG 2 cut(s) 246, 294
NmuCI GTSAC 1 cut(s) 1167
NspI RCATGY 3 cut(s) 127, 475, 717
PagI TCATGA 1 cut(s) 1290
PceI AGGCCT 1 cut(s) 495
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 441
PctI GAATGC 3 cut(s) 587, 623, 1353
PdiI GCCGGC 1 cut(s) 517
PfeI GAWTC 2 cut(s) 984, 1287
Pfl23II CGTACG 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 695
PinAI ACCGGT 1 cut(s) 873
PkrI GCNGC 7 cut(s) 250, 259, 470, 1053, 1123, 1126, 1358
PleI GAGTC 2 cut(s) 1061, 1125
PluTI GGCGCC 1 cut(s) 543
PpsI GAGTC 2 cut(s) 1061, 1125
PpuMI RGGWCCY 1 cut(s) 685
Psp5II RGGWCCY 1 cut(s) 685
PspFI CCCAGC 4 cut(s) 519, 546, 634, 1227
PspLI CGTACG 1 cut(s) 409
PspN4I GGNNCC 8 cut(s) 271, 297, 298, 535, 541, 904, 1081, 1207
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 7 cut(s) 295, 296, 317, 522, 667, 685, 1358
PspPPI RGGWCCY 1 cut(s) 685
PsuI RGATCY 1 cut(s) 795
RsaI GTAC 4 cut(s) 411, 663, 863, 1306
RsaNI GTAC 4 cut(s) 410, 662, 862, 1305
RseI CAYNNNNRTG 2 cut(s) 290, 893
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 7 cut(s) 249, 258, 469, 1052, 1122, 1125, 1357
Sau3AI GATC 6 cut(s) 10, 214, 795, 1296, 1375, 1381
Sau96I GGNCC 7 cut(s) 295, 296, 317, 522, 667, 685, 1358
ScaI AGTACT 1 cut(s) 863
SchI GAGTC 2 cut(s) 1061, 1125
ScrFI CCNGG 1 cut(s) 697
SduI GDGCHC 3 cut(s) 299, 536, 1082
SfaNI GCATC 2 cut(s) 122, 473
SfcI CTRYAG 2 cut(s) 703, 784
SfoI GGCGCC 1 cut(s) 541
SinI GGWCC 2 cut(s) 667, 685
SmiMI CAYNNNNRTG 2 cut(s) 290, 893
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 495
SspDI GGCGCC 1 cut(s) 539
SspMI CTAG 1 cut(s) 1172
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 695
StyI CCWWGG 3 cut(s) 108, 291, 1209
TaaI ACNGT 4 cut(s) 506, 749, 1030, 1239
TaiI ACGT 1 cut(s) 1139
TaqI TCGA 4 cut(s) 756, 941, 1380, 1410
TasI AATT 1 cut(s) 92
TatI WGTACW 2 cut(s) 861, 1304
TauI GCSGC 4 cut(s) 251, 260, 1127, 1359
TfiI GAWTC 2 cut(s) 984, 1287
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 1204
TseFI GTSAC 1 cut(s) 1167
TseI GCWGC 3 cut(s) 468, 1051, 1121
Tsp45I GTSAC 1 cut(s) 1167
TspDTI ATGAA 4 cut(s) 87, 391, 565, 616
TspRI CASTG 1 cut(s) 1204
VpaK11BI GGWCC 2 cut(s) 667, 685
XapI RAATTY 1 cut(s) 92
XceI RCATGY 3 cut(s) 127, 475, 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 1 cut(s) 1172
ZrmI AGTACT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.