MD17G1030600.v1.1

High affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
2207959 .. 2209647
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1030600.v1.1.491

Sequence Viewer

Length: 1173 bp
ATGGAAGCTAAAGATGCTGACGAAGAACAAGTACTAAAAGATCATCGTAGTATGTTTGCATTACCAGTAGATGCTGATCAAAAGGCCACAGAGTTGAGGTTATTTTCAATAGCGCCACCCCACATGCTGGCCTTCCACCTTGCATGGCTCTCCCTCTTCTCCAACTTCTTCTCCACCTTCTCCATCCCTCCCCTCCTCGCCGTCATCCGCGACGACCTCAACCTCACCGACACAGACACCGGTCACGCAGGCACCGCTGCTTTCCTCGGCTCCATCTTCTCCCGCATTGCCATGGGCCCTATATGCGACCTCCTCGGTCCCCGTATCGCCATCGCCACCCTCTCCCTCCTCACCGCCCCCGTCATCCTCTCCACATCCCTCGTCTCCTCCCCTAACTCCTTCATCGCCATCCGCTTCATCGCCGGCTTCTCCCTCGCCAACTTCGTCGCCAACCAGTTCTGGATGAGCTGCATGTTCTCGGGATGCGTAGTCGGCCTTGCCAACGGCTTCTCCTCCGGCTGGGCCAACATGGGCTCTGGCGTCACCCAGCTTGTCATGCCACTCATTTATTCTCTCATCATGTCATTCAACGTGCAGTCCTTCGCAGCTTGGAGGCTGGCATTTATCGTGCCAGCAGTTTTTCAAGTTGTGACGGCCATATTGGTCCTAATGTTTGGCCAGGACCTACCTTCCGGGAGCTACAAACGCTCTCAGAAGGTCGAAAATAAGTTCAAAGAGAGCTTATTAAGTGTTATTTCTAAAGGGGTCAAGAATTATAGAGCATGGATTTTGGCGTTGACTTATGCCTTCAGTTTTGGAGTGGAGTTGACGACTGATAATATCATAGCTCAATATTTCTACGACAGATTCAACGTGAATCTTGAGGTGGCGGGGATCATAGCGGCCAGCTTCGGAATGACGAATTTCTTTTCAAGGCCGAGTGGCGGGTTAGTTTCCGATAAGCTGGCGCAGAGGTTCGGGATGAGGGGGAGGTTGTGGGGGTTGTGGGTGGCGCAGACGGTGGCGGGCTGCTTGTGTTTGTTACTCGGGCGAGTCAACTCGCTCTGGGGATCCATACTTGTCATGTGTGCGTTTTCTATCTTTGTACAAGCTGCTGCTGGCCTCACGTTTGGCGTGGTGCCGTTTGTGTCCAAAAGAAACAATAATGACTAA

Protein Analysis

391

Amino Acids

42.52

Weight (kDa)

8.74

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 49 - 373 8.5e-27 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 251, 1138
AccB7I CCANNNNNTGG 1 cut(s) 127
AccII CGCG 1 cut(s) 210
AciI CCGC 9 cut(s) 208, 255, 283, 354, 412, 890, 902, 945, 1025
AclWI GGATC 3 cut(s) 902, 1065, 1078
AcoI YGGCCR 3 cut(s) 654, 676, 903
AcsI RAATTY 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 793
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 2 cut(s) 33, 1107
AfiI CCNNNNNNNGG 3 cut(s) 127, 519, 944
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 6 cut(s) 108, 589, 644, 733, 871, 933
AjnI CCWGG 1 cut(s) 678
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 3 cut(s) 902, 1065, 1078
Ama87I CYCGRG 2 cut(s) 478, 1046
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 6 cut(s) 257, 468, 605, 1029, 1112, 1115
ApoI RAATTY 1 cut(s) 922
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 3 cut(s) 115, 970, 1015
AspS9I GGNCC 6 cut(s) 295, 296, 317, 522, 664, 682
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 3 cut(s) 217, 343, 535
AvaI CYCGRG 2 cut(s) 478, 1046
AvaII GGWCC 3 cut(s) 317, 664, 682
BaeGI GKGCMC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 678
BamHI GGATCC 1 cut(s) 1070
BanI GGYRCC 2 cut(s) 251, 1138
BanII GRGCYC 2 cut(s) 299, 536
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbvI GCAGC 6 cut(s) 244, 455, 617, 1016, 1099, 1102
BccI CCATC 4 cut(s) 191, 281, 338, 416
BceAI ACGGC 4 cut(s) 185, 520, 669, 1126
BciT130I CCWGG 1 cut(s) 680
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 388
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 7 cut(s) 258, 469, 606, 903, 1030, 1113, 1116
BlsI GCNGC 7 cut(s) 259, 470, 607, 904, 1031, 1114, 1117
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 680, 694
Bme18I GGWCC 3 cut(s) 317, 664, 682
BmeT110I CYCGRG 2 cut(s) 478, 1046
BmgT120I GGNCC 6 cut(s) 295, 296, 317, 522, 664, 682
BmiI GGNNCC 6 cut(s) 253, 271, 297, 319, 1072, 1140
BmrFI CCNGG 2 cut(s) 680, 694
BmsI GCATC 3 cut(s) 4, 61, 473
BoxI GACNNNNGTC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 1 cut(s) 694
BsaBI GATNNNNATC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 265, 291, 313
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 494, 524
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 519, 944
Bse118I RCCGGY 2 cut(s) 239, 422
Bse1I ACTGG 2 cut(s) 65, 454
Bse3DI GCAATG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 3 cut(s) 265, 291, 313
BseGI GGATG 8 cut(s) 183, 204, 363, 374, 408, 468, 488, 987
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 127, 519, 944
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 2 cut(s) 65, 454
BseRI GAGGAG 5 cut(s) 185, 302, 338, 376, 502
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 6 cut(s) 244, 455, 617, 1016, 1099, 1102
BseYI CCCAGC 2 cut(s) 519, 546
BsgI GTGCAG 1 cut(s) 614
Bsh1236I CGCG 1 cut(s) 210
BshNI GGYRCC 2 cut(s) 251, 1138
BshTI ACCGGT 1 cut(s) 239
BsiHKCI CYCGRG 2 cut(s) 478, 1046
BsiSI CCGG 4 cut(s) 240, 423, 516, 693
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 127, 519, 944
BsmAI GTCTC 1 cut(s) 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 303
BsoBI CYCGRG 2 cut(s) 478, 1046
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 536
Bsp1407I TGTACA 1 cut(s) 1105
Bsp143I GATC 4 cut(s) 40, 76, 894, 1070
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 9 cut(s) 208, 255, 283, 354, 412, 890, 902, 945, 1025
BspCNI CTCAG 1 cut(s) 724
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 6 cut(s) 253, 271, 297, 319, 1072, 1140
BspPI GGATC 3 cut(s) 902, 1065, 1078
BspT107I GGYRCC 2 cut(s) 251, 1138
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 2 cut(s) 239, 422
BsrGI TGTACA 1 cut(s) 1105
BsrI ACTGG 2 cut(s) 65, 454
BssAI RCCGGY 2 cut(s) 239, 422
BssECI CCNNGG 3 cut(s) 265, 291, 313
BssMI GATC 4 cut(s) 40, 76, 894, 1070
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 1021
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 540
BstAUI TGTACA 1 cut(s) 1105
BstC8I GCNNGC 9 cut(s) 129, 250, 424, 618, 633, 907, 966, 1027, 1120
BstDEI CTNAG 1 cut(s) 711
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 8 cut(s) 183, 204, 363, 374, 408, 468, 488, 987
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 3 cut(s) 115, 970, 1015
BstKTI GATC 4 cut(s) 43, 79, 897, 1073
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 4 cut(s) 40, 76, 894, 1070
BstMWI GCNNNNNNNGC 6 cut(s) 14, 254, 303, 492, 556, 705
BstNI CCWGG 1 cut(s) 680
BstNSI RCATGY 2 cut(s) 127, 475
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 678, 692
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 6 cut(s) 244, 455, 617, 1016, 1099, 1102
BstX2I RGATCY 1 cut(s) 1070
BstYI RGATCY 1 cut(s) 1070
BtgI CCRYGG 1 cut(s) 291
BtgZI GCGATG 3 cut(s) 316, 388, 403
BtsCI GGATG 8 cut(s) 183, 204, 363, 374, 408, 468, 488, 987
Cac8I GCNNGC 9 cut(s) 129, 250, 424, 618, 633, 907, 966, 1027, 1120
CfoI GCGC 3 cut(s) 115, 970, 1015
Cfr10I RCCGGY 2 cut(s) 239, 422
Cfr13I GGNCC 6 cut(s) 295, 296, 317, 522, 664, 682
CseI GACGC 1 cut(s) 529
Csp6I GTAC 2 cut(s) 32, 1106
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 9 cut(s) 124, 144, 292, 472, 529, 556, 580, 783, 1084
CviQI GTAC 2 cut(s) 32, 1106
DdeI CTNAG 1 cut(s) 711
DpnI GATC 4 cut(s) 42, 78, 896, 1072
DpnII GATC 4 cut(s) 40, 76, 894, 1070
EaeI YGGCCR 3 cut(s) 654, 676, 903
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 2 cut(s) 299, 536
Eco47I GGWCC 3 cut(s) 317, 664, 682
Eco57I CTGAAG 1 cut(s) 793
Eco88I CYCGRG 2 cut(s) 478, 1046
EcoO109I RGGNCCY 2 cut(s) 296, 682
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 299, 536
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 9 cut(s) 127, 147, 295, 475, 532, 559, 583, 786, 1087
FaqI GGGAC 1 cut(s) 303
FatI CATG 9 cut(s) 123, 143, 291, 471, 528, 555, 579, 782, 1083
FauI CCCGC 4 cut(s) 290, 883, 938, 1018
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 7 cut(s) 258, 469, 606, 903, 1030, 1113, 1116
FokI GGATG 8 cut(s) 170, 191, 350, 361, 395, 475, 495, 994
FriOI GRGCYC 2 cut(s) 299, 536
Fsp4HI GCNGC 7 cut(s) 258, 469, 606, 903, 1030, 1113, 1116
GlaI GCGC 3 cut(s) 114, 969, 1014
GluI GCNGC 7 cut(s) 258, 469, 606, 903, 1030, 1113, 1116
GsaI CCCAGC 2 cut(s) 523, 550
HaeII RGCGCY 1 cut(s) 116
HapII CCGG 4 cut(s) 240, 423, 516, 693
HgaI GACGC 1 cut(s) 529
HhaI GCGC 3 cut(s) 115, 970, 1015
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 9 cut(s) 127, 147, 295, 475, 532, 559, 583, 786, 1087
Hin6I GCGC 3 cut(s) 113, 968, 1013
HinP1I GCGC 3 cut(s) 113, 968, 1013
HincII GTYRAC 3 cut(s) 798, 828, 1057
HindII GTYRAC 3 cut(s) 798, 828, 1057
HinfI GANTC 3 cut(s) 867, 877, 1053
HpaII CCGG 4 cut(s) 240, 423, 516, 693
HphI GGTGA 3 cut(s) 217, 343, 535
Hpy166II GTNNAC 3 cut(s) 798, 828, 1057
Hpy188I TCNGA 3 cut(s) 714, 914, 958
Hpy188III TCNNGA 5 cut(s) 460, 480, 769, 881, 979
Hpy8I GTNNAC 3 cut(s) 798, 828, 1057
Hpy99I CGWCG 2 cut(s) 215, 449
HpyAV CCTTC 7 cut(s) 142, 187, 409, 610, 699, 709, 817
HpyCH4III ACNGT 1 cut(s) 1021
HpyCH4IV ACGT 3 cut(s) 591, 873, 1127
HpyCH4V TGCA 4 cut(s) 59, 143, 471, 595
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 254, 303, 492, 556, 705
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 3 cut(s) 591, 873, 1127
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 9 cut(s) 127, 147, 295, 475, 532, 559, 583, 786, 1087
HspAI GCGC 3 cut(s) 113, 968, 1013
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 40, 76, 894, 1070
LmnI GCTCC 2 cut(s) 275, 696
Lsp1109I GCAGC 6 cut(s) 244, 455, 617, 1016, 1099, 1102
LweI GCATC 3 cut(s) 4, 61, 473
MaeII ACGT 3 cut(s) 591, 873, 1127
MaeIII GTNAC 4 cut(s) 242, 541, 649, 1041
MalI GATC 4 cut(s) 42, 78, 896, 1072
MboI GATC 4 cut(s) 40, 76, 894, 1070
MboII GAAGA 4 cut(s) 35, 148, 160, 268
MflI RGATCY 1 cut(s) 1070
MhlI GDGCHC 2 cut(s) 299, 536
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 2 cut(s) 772, 922
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 1 cut(s) 1062
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 678
MroNI GCCGGC 1 cut(s) 422
MscI TGGCCA 1 cut(s) 678
MseI TTAA 1 cut(s) 746
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 4 cut(s) 240, 423, 516, 693
MspR9I CCNGG 2 cut(s) 680, 694
MvaI CCWGG 1 cut(s) 680
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 6 cut(s) 14, 254, 303, 492, 556, 705
NaeI GCCGGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 694
NcoI CCATGG 1 cut(s) 291
NdeII GATC 4 cut(s) 40, 76, 894, 1070
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 9 cut(s) 127, 147, 295, 475, 532, 559, 583, 786, 1087
NlaIV GGNNCC 6 cut(s) 253, 271, 297, 319, 1072, 1140
NmeAIII GCCGAG 2 cut(s) 246, 963
NmuCI GTSAC 3 cut(s) 242, 541, 649
NspI RCATGY 2 cut(s) 127, 475
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 867, 877
PflMI CCANNNNNTGG 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 692
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 7 cut(s) 259, 470, 607, 904, 1031, 1114, 1117
PleI GAGTC 1 cut(s) 1061
PpsI GAGTC 1 cut(s) 1061
PpuMI RGGWCCY 1 cut(s) 682
PshAI GACNNNNGTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 678
PspFI CCCAGC 2 cut(s) 519, 546
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 6 cut(s) 253, 271, 297, 319, 1072, 1140
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 6 cut(s) 295, 296, 317, 522, 664, 682
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 1 cut(s) 1070
RsaI GTAC 2 cut(s) 33, 1107
RsaNI GTAC 2 cut(s) 32, 1106
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 746
SatI GCNGC 7 cut(s) 258, 469, 606, 903, 1030, 1113, 1116
Sau3AI GATC 4 cut(s) 40, 76, 894, 1070
Sau96I GGNCC 6 cut(s) 295, 296, 317, 522, 664, 682
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 1 cut(s) 1062
ScrFI CCNGG 2 cut(s) 680, 694
SduI GDGCHC 2 cut(s) 299, 536
SfaNI GCATC 3 cut(s) 4, 61, 473
SinI GGWCC 3 cut(s) 317, 664, 682
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 2 cut(s) 772, 922
SsiI CCGC 9 cut(s) 208, 255, 283, 354, 412, 890, 902, 945, 1025
SspI AATATT 1 cut(s) 854
StyD4I CCNGG 2 cut(s) 678, 692
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 1021
TaiI ACGT 3 cut(s) 594, 876, 1130
TaqI TCGA 1 cut(s) 720
TaqII GACCGA 1 cut(s) 305
TasI AATT 2 cut(s) 772, 922
TatI WGTACW 2 cut(s) 31, 1105
TauI GCSGC 1 cut(s) 905
TfiI GAWTC 2 cut(s) 867, 877
Tru1I TTAA 1 cut(s) 746
Tru9I TTAA 1 cut(s) 746
TseFI GTSAC 3 cut(s) 242, 541, 649
TseI GCWGC 6 cut(s) 257, 468, 605, 1029, 1112, 1115
Tsp45I GTSAC 3 cut(s) 242, 541, 649
TspDTI ATGAA 2 cut(s) 391, 406
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 3 cut(s) 317, 664, 682
XapI RAATTY 1 cut(s) 922
XceI RCATGY 2 cut(s) 127, 475
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.