Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012097

Physical Location & Seq

Genomic Coordinates Forward (+)

68682998 .. 68685246

Gene Structure 2249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0561200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTTGTAATCTTGATAATCTTTGGCGTTTTTGGCCTGCAAGATGTTCTCATTGCTTGAATATCAGAAGACGCCAAGGAGTGGTTTATAAAGCTGATCTGGTTGTCATTGGAATCTTTGTTGGTGTAGCCCATGGAATTTTGATAGCTGCACTCATATTTTTCGGAATAAAGTGGAATAATCACAACAAAGATGGATTTCCTTCTGCATCAGGTGTACTTAGATACTCTTACAAGGATGTACAGAAAGCTACACAGAACTTCACTACCATTTGGGGACAAGGGGCTTTTGGTCCAGTCTATAAAGCAACAATGCCTGCTGGAAAGGTAGTAGCGCTGAAGGTGCTTGCTTCAAATTCCAAGCAGGGAGAGAGAGTTCCAGACAGAGGTATCTCTGTTAGGAAGACTGCATCATTGAAATCTAGTGAACCTCATAGGTATCACTACAATGTTTTGGATGTGAGAGTGGACCGGCACATTGACAAAGGAAAGGAAGATGGTTTGTATATTAGCTGTGTCGCCTCATCTGCGAATATGTGGGCTATAGTCATGGATGCAGGGACAGGTTTCACATCCCAACTTTATGAACTATTCACCTGTTTACTTGCAGGAGGAGTGGATAATGGAACAGTGGGACAAGAACTACCATATCACTTCACTTGCTGGCGCAGGCAATGGCAGTGCCCTGGTGGTAATGTCCAAATGTATGTCAAACAAATTAACAGAGCTTCATGTTGTCCGTGGAAGTTTGGCTATAGGAATCTGGTAGCAGATGGGGCATTGTCATGTCCTGAAATGCAGGTTATTCTAATCAGGTTGTTGAGATTGATTTCCCATATCCAAGCGAAGGCATCCATAAAAGATGGGAGAATGGATATCGCATTTACCTCAACTGCTGCGACAGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

303

Amino Acids

33.8

Weight (kDa)

9.41

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7477	PF24289	144 - 202	1.7e-23	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14570
fragaria_vesca	FvH4_6g51160
malus_domestica	MD09G1028900.v1.1 MD17G1030600.v1.1
prunus_persica	Prupe.3G289200_v2.0.a1
pyrus_communis	pycom111g02290 pycom17g02800 pycom17g02810
rosa_chinensis	RchiOBHm_Chr2g0172751
rosa_laevigata	RLG00000022130
rosa_multiflora	Rmu_co8072536.1_g000001 Rmu_sc0010744.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079560
rosa_rugosa	Rorug02G0561200
rosa_samantha	Rh2AG638400 Rh2BG652000 Rh2CG618300 Rh2DG666000
rosa_wichuraiana	Rw2G052740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	790
AccB7I	CCANNNNNTGG	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	138, 355
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	73
AfaI	GTAC	2 cut(s)	219, 243
AfeI	AGCGCT	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	82, 386, 847
AgsI	TTSAA	3 cut(s)	61, 354, 418
AjnI	CCWGG	1 cut(s)	685
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	95, 149, 251, 513, 728
AluI	AGCT	5 cut(s)	95, 149, 251, 513, 728
Aor51HI	AGCGCT	1 cut(s)	336
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	149, 896
ApoI	RAATTY	2 cut(s)	138, 355
AspLEI	GCGC	2 cut(s)	337, 669
AspS9I	GGNCC	2 cut(s)	293, 469
AsuHPI	GGTGA	1 cut(s)	586
AvaII	GGWCC	2 cut(s)	293, 469
BaeGI	GKGCMC	1 cut(s)	686
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BbsI	GAAGAC	2 cut(s)	76, 410
BbvI	GCAGC	2 cut(s)	136, 883
BccI	CCATC	4 cut(s)	188, 491, 767, 857
BciT130I	CCWGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	543, 754
BfoI	RGCGCY	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	2 cut(s)	150, 897
BlsI	GCNGC	2 cut(s)	151, 898
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	2 cut(s)	293, 469
BmgT120I	GGNCC	2 cut(s)	293, 469
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	4 cut(s)	218, 419, 544, 860
BpiI	GAAGAC	2 cut(s)	76, 410
BsaHI	GRCGYC	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	76, 133, 685, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 386, 847
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	2 cut(s)	52, 680
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	4 cut(s)	76, 133, 685, 740
BseGI	GGATG	5 cut(s)	244, 463, 559, 572, 851
BseLI	CCNNNNNNNGG	3 cut(s)	82, 386, 847
BseMI	GCAATG	2 cut(s)	52, 680
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	136, 883
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	3 cut(s)	291, 574, 648
BslI	CCNNNNNNNGG	3 cut(s)	82, 386, 847
BsmFI	GGGAC	3 cut(s)	291, 574, 648
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	133
BspANI	GGCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	790
BsrDI	GCAATG	2 cut(s)	52, 680
BsrFI	RCCGGY	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	4 cut(s)	76, 133, 685, 740
BssMI	GATC	1 cut(s)	97
BssNI	GRCGYC	1 cut(s)	73
BssT1I	CCWWGG	2 cut(s)	76, 133
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	631
BstACI	GRCGYC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	241
BstC8I	GCNNGC	5 cut(s)	39, 318, 348, 665, 671
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	2 cut(s)	133, 740
BstF5I	GGATG	5 cut(s)	244, 463, 559, 572, 851
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	337, 669
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 343, 527, 776
BstNI	CCWGG	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	2 cut(s)	543, 754
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	2 cut(s)	136, 883
BstV2I	GAAGAC	2 cut(s)	76, 410
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	2 cut(s)	133, 740
BtsCI	GGATG	5 cut(s)	244, 463, 559, 572, 851
BtsI	GCAGTG	1 cut(s)	686
BtsIMutI	CAGTG	2 cut(s)	636, 686
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	5 cut(s)	39, 318, 348, 665, 671
CfoI	GCGC	2 cut(s)	337, 669
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	293, 469
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	218, 242
CviAII	CATG	4 cut(s)	134, 550, 732, 786
CviQI	GTAC	2 cut(s)	218, 242
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	76, 133
Eco32I	GATATC	1 cut(s)	877
Eco47I	GGWCC	2 cut(s)	293, 469
Eco47III	AGCGCT	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	76, 133
ErhI	CCWWGG	2 cut(s)	76, 133
FaeI	CATG	4 cut(s)	137, 553, 735, 789
FaqI	GGGAC	3 cut(s)	291, 574, 648
FatI	CATG	4 cut(s)	133, 549, 731, 785
Fnu4HI	GCNGC	2 cut(s)	150, 897
FokI	GGATG	5 cut(s)	251, 470, 559, 566, 838
Fsp4HI	GCNGC	2 cut(s)	150, 897
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	336, 668
GluI	GCNGC	2 cut(s)	150, 897
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	472
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	337, 669
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	137, 553, 735, 789
Hin6I	GCGC	2 cut(s)	335, 667
HinP1I	GCGC	2 cut(s)	335, 667
HinfI	GANTC	2 cut(s)	114, 760
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	4 cut(s)	218, 428, 469, 602
Hpy188I	TCNGA	2 cut(s)	68, 167
Hpy188III	TCNNGA	3 cut(s)	14, 380, 791
Hpy8I	GTNNAC	4 cut(s)	218, 428, 469, 602
HpyAV	CCTTC	3 cut(s)	213, 334, 841
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4V	TGCA	7 cut(s)	41, 152, 209, 410, 557, 608, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 343, 527, 776
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	137, 553, 735, 789
HspAI	GCGC	2 cut(s)	335, 667
Kzo9I	GATC	1 cut(s)	97
Lsp1109I	GCAGC	2 cut(s)	136, 883
LweI	GCATC	4 cut(s)	218, 419, 544, 860
MaeI	CTAG	1 cut(s)	423
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	3 cut(s)	81, 415, 506
MhlI	GDGCHC	1 cut(s)	686
MluCI	AATT	3 cut(s)	138, 355, 717
MnlI	CCTC	6 cut(s)	380, 441, 532, 605, 898, 898
MseI	TTAA	2 cut(s)	720, 910
MslI	CAYNNNNRTG	2 cut(s)	447, 784
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	4 cut(s)	34, 343, 527, 776
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	137, 553, 735, 789
PfeI	GAWTC	2 cut(s)	114, 760
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	151, 898
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	293, 469
RsaI	GTAC	2 cut(s)	219, 243
RsaNI	GTAC	2 cut(s)	218, 242
RseI	CAYNNNNRTG	2 cut(s)	447, 784
SaqAI	TTAA	2 cut(s)	720, 910
SatI	GCNGC	2 cut(s)	150, 897
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	293, 469
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	686
SfaNI	GCATC	4 cut(s)	218, 419, 544, 860
SfcI	CTRYAG	2 cut(s)	543, 754
SinI	GGWCC	2 cut(s)	293, 469
SmiMI	CAYNNNNRTG	2 cut(s)	447, 784
Sse9I	AATT	3 cut(s)	138, 355, 717
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	2 cut(s)	76, 133
TaaI	ACNGT	1 cut(s)	631
TasI	AATT	3 cut(s)	138, 355, 717
TatI	WGTACW	2 cut(s)	217, 241
TfiI	GAWTC	2 cut(s)	114, 760
Tru1I	TTAA	2 cut(s)	720, 910
Tru9I	TTAA	2 cut(s)	720, 910
TscAI	CASTG	2 cut(s)	636, 686
TseI	GCWGC	2 cut(s)	149, 896
TspDTI	ATGAA	2 cut(s)	600, 720
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	2 cut(s)	636, 686
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	293, 469
XapI	RAATTY	2 cut(s)	138, 355
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.