Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012097

Physical Location & Seq

Genomic Coordinates Reverse (-)

1862499 .. 1863278

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTTGCATTACCAGTAGATGATGATCAAAAGGCCACAGAGTTGAGGTTATTTTCAATAGCGCCACCCTACATGCTGGCCTTCCACCTTGCATGGCTCTCCCTCTTCTCCAACTTCTTCTCCACCTTCACCATCCCTCCCCTCCTCGCCGTCATCCGCGACAACCTCAACCTCACCGACACCGACACCGGTCACACAGGCACCGCTGCCTTCCTCGGCTCTATCTTCTCCCGCATTGCCATGGGCCCTATATGCGACCTCCTCGGTCCCCGTATCGTCATCGCCACCCTCTCCCTCCTCACCGCCCCCGTCATCCTCTCCACATCCCTCGTCTCCTCCCCTAACTCCTTCATCGCCATCCGCTTCATCGCCGACTTCTCCCTCGCCAACTTCGTCGCCAACCCGTTCTGGATGAGCTGCATGTTCTCGGGATGCGTAGTCGGCCTTGCCAACGGCTTCTCCGCTGGCAGGGCCAACATGGGCTCTGGCGTCACCCAGCTGATCATGCCACTCATTTATTCTCTCATCATGTCATTCAACGTGCCGTCCTTCGCAGCTTGGAGGCTGGCATTTATCGTGCCAGCAGTTTTTCAAGTTGTGACGGCCATATTGGTCCTGACGTTTGGCCAGGACCTACCTTCTGGAAGCTACAAACGCTCTCAAAAGGTCGACAATAAGTCCAAAGAGAGCTTGTTAAGTGTTATTTCTAGCGGGATCAAGAATTATAGAGCATGGATTTTGGCGTTGACTTATGCTTTCAGTTTTGGAGTGGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

260

Amino Acids

28.08

Weight (kDa)

8.39

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	32 - 254	2.6e-17	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14570
fragaria_vesca	FvH4_6g51160
malus_domestica	MD09G1028900.v1.1 MD17G1030600.v1.1
prunus_persica	Prupe.3G289200_v2.0.a1
pyrus_communis	pycom111g02290 pycom17g02800 pycom17g02810
rosa_chinensis	RchiOBHm_Chr2g0172751
rosa_laevigata	RLG00000022130
rosa_multiflora	Rmu_co8072536.1_g000001 Rmu_sc0010744.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079560
rosa_rugosa	Rorug02G0561200
rosa_samantha	Rh2AG638400 Rh2BG652000 Rh2CG618300 Rh2DG666000
rosa_wichuraiana	Rw2G052740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	669
AccII	CGCG	1 cut(s)	159
AciI	CCGC	7 cut(s)	157, 204, 232, 303, 361, 462, 711
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	2 cut(s)	603, 625
AcyI	GRCGYC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	468
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	57, 538, 593
AhdI	GACNNNNNGTC	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	5 cut(s)	417, 499, 557, 648, 690
AluI	AGCT	5 cut(s)	417, 499, 557, 648, 690
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	7 cut(s)	33, 78, 244, 442, 471, 603, 625
ApaI	GGGCCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	206, 417, 554
AsiGI	ACCGGT	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	6 cut(s)	244, 245, 266, 471, 613, 631
AsuHPI	GGTGA	4 cut(s)	121, 166, 292, 484
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	266, 613, 631
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	248, 485
BbvI	GCAGC	3 cut(s)	193, 404, 566
BccI	CCATC	2 cut(s)	140, 365
BceAI	ACGGC	4 cut(s)	134, 469, 529, 618
BciT130I	CCWGG	1 cut(s)	629
BclI	TGATCA	2 cut(s)	25, 501
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	708
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	3 cut(s)	207, 418, 555
BlsI	GCNGC	3 cut(s)	208, 419, 556
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	3 cut(s)	266, 613, 631
BmeRI	GACNNNNNGTC	1 cut(s)	676
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	6 cut(s)	244, 245, 266, 471, 613, 631
BmiI	GGNNCC	3 cut(s)	202, 246, 268
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	422
BoxI	GACNNNNGTC	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	214, 240, 262
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	6 cut(s)	104, 121, 134, 151, 443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	3 cut(s)	214, 240, 262
BseGI	GGATG	7 cut(s)	132, 153, 312, 323, 357, 417, 437
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	4 cut(s)	134, 251, 287, 325
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	193, 404, 566
BseYI	CCCAGC	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	7 cut(s)	35, 80, 246, 444, 473, 605, 627
BshNI	GGYRCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	7 cut(s)	35, 80, 246, 444, 473, 605, 627
BsoBI	CYCGRG	1 cut(s)	427
Bsp120I	GGGCCC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	248, 485
Bsp143I	GATC	3 cut(s)	25, 501, 714
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	7 cut(s)	157, 204, 232, 303, 361, 462, 711
BspANI	GGCC	7 cut(s)	35, 80, 246, 444, 473, 605, 627
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	202, 246, 268
BspPI	GGATC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	214, 240, 262
BssMI	GATC	3 cut(s)	25, 501, 714
BssNI	GRCGYC	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	629
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	489
BstC8I	GCNNGC	4 cut(s)	78, 466, 567, 582
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	7 cut(s)	132, 153, 312, 323, 357, 417, 437
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	28, 504, 717
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	3 cut(s)	25, 501, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 441, 470, 505, 654
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	2 cut(s)	76, 424
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	193, 404, 566
BsuRI	GGCC	7 cut(s)	35, 80, 246, 444, 473, 605, 627
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	3 cut(s)	265, 337, 352
BtsCI	GGATG	7 cut(s)	132, 153, 312, 323, 357, 417, 437
Cac8I	GCNNGC	4 cut(s)	78, 466, 567, 582
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	6 cut(s)	244, 245, 266, 471, 613, 631
CseI	GACGC	1 cut(s)	478
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	8 cut(s)	73, 93, 241, 421, 478, 505, 529, 732
DpnI	GATC	3 cut(s)	27, 503, 716
DpnII	GATC	3 cut(s)	25, 501, 714
DriI	GACNNNNNGTC	1 cut(s)	676
EaeI	YGGCCR	2 cut(s)	603, 625
Eam1104I	CTCTTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	248, 485
Eco47I	GGWCC	3 cut(s)	266, 613, 631
Eco88I	CYCGRG	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	245, 631
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	248, 485
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	8 cut(s)	76, 96, 244, 424, 481, 508, 532, 735
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	8 cut(s)	72, 92, 240, 420, 477, 504, 528, 731
FauI	CCCGC	2 cut(s)	239, 704
FbaI	TGATCA	2 cut(s)	25, 501
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	3 cut(s)	207, 418, 555
FokI	GGATG	7 cut(s)	119, 140, 299, 310, 344, 424, 444
FriOI	GRGCYC	2 cut(s)	248, 485
Fsp4HI	GCNGC	3 cut(s)	207, 418, 555
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	207, 418, 555
GsaI	CCCAGC	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	7 cut(s)	35, 80, 246, 444, 473, 605, 627
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	8 cut(s)	76, 96, 244, 424, 481, 508, 532, 735
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	2 cut(s)	670, 747
HindII	GTYRAC	2 cut(s)	670, 747
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	4 cut(s)	121, 166, 292, 484
Hpy166II	GTNNAC	2 cut(s)	670, 747
Hpy188III	TCNNGA	5 cut(s)	409, 429, 616, 642, 718
Hpy8I	GTNNAC	2 cut(s)	670, 747
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	6 cut(s)	91, 136, 220, 358, 559, 648
HpyCH4IV	ACGT	2 cut(s)	540, 620
HpyCH4V	TGCA	3 cut(s)	8, 92, 420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 441, 470, 505, 654
HpySE526I	ACGT	2 cut(s)	540, 620
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	8 cut(s)	76, 96, 244, 424, 481, 508, 532, 735
HspAI	GCGC	1 cut(s)	62
Ksp22I	TGATCA	2 cut(s)	25, 501
Kzo9I	GATC	3 cut(s)	25, 501, 714
Lsp1109I	GCAGC	3 cut(s)	193, 404, 566
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	2 cut(s)	540, 620
MaeIII	GTNAC	3 cut(s)	191, 490, 598
MalI	GATC	3 cut(s)	27, 503, 716
MboI	GATC	3 cut(s)	25, 501, 714
MboII	GAAGA	3 cut(s)	97, 109, 217
MhlI	GDGCHC	2 cut(s)	248, 485
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	1 cut(s)	721
MluNI	TGGCCA	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	135
Mox20I	TGGCCA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	1 cut(s)	695
MslI	CAYNNNNRTG	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	627
MspA1I	CMGCKG	3 cut(s)	206, 464, 499
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	5 cut(s)	252, 441, 470, 505, 654
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	25, 501, 714
NlaIII	CATG	8 cut(s)	76, 96, 244, 424, 481, 508, 532, 735
NlaIV	GGNNCC	3 cut(s)	202, 246, 268
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	3 cut(s)	191, 490, 598
NspI	RCATGY	2 cut(s)	76, 424
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	208, 419, 556
PpuMI	RGGWCCY	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	631
Psp6I	CCWGG	1 cut(s)	627
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	3 cut(s)	202, 246, 268
PspOMI	GGGCCC	1 cut(s)	244
PspPI	GGNCC	6 cut(s)	244, 245, 266, 471, 613, 631
PspPPI	RGGWCCY	1 cut(s)	631
PvuII	CAGCTG	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	3 cut(s)	207, 418, 555
Sau3AI	GATC	3 cut(s)	25, 501, 714
Sau96I	GGNCC	6 cut(s)	244, 245, 266, 471, 613, 631
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	248, 485
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	3 cut(s)	266, 613, 631
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	721
SsiI	CCGC	7 cut(s)	157, 204, 232, 303, 361, 462, 711
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	240
TaiI	ACGT	2 cut(s)	543, 623
TaqI	TCGA	1 cut(s)	669
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	1 cut(s)	721
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TseFI	GTSAC	3 cut(s)	191, 490, 598
TseI	GCWGC	3 cut(s)	206, 417, 554
Tsp45I	GTSAC	3 cut(s)	191, 490, 598
TspDTI	ATGAA	2 cut(s)	340, 355
VpaK11BI	GGWCC	3 cut(s)	266, 613, 631
XceI	RCATGY	2 cut(s)	76, 424
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.