MD09G1028900.v1.1

High affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
1782533 .. 1784036
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1028900.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGAAGCTGATGCTGACGAAGAACAAGTGCTAAAAGATCATCGTAATATGTTTGAACTACCAGTAGATGCTGATCAAAAGGCCACAGAGTTGAGGTTATGTTCAATAGCGCCACCCCACATGCTGGCCTTCCACCTTGCATGGCTCTCCCTCTTCTCCAACTTCTTCTCCACCTTCTCCATCCCTCCCCTCCTCGCCGTCATCCGCAACGACCTCAATCTCACCGACACCGACACCGGCTATGCCGGCACTGCCGCCTTCGTCGGCTCCATCGTCTCCCGCATTGCCATGGGACCTATATGCGACCTCATCGGCCCCCGCATCGCCATCGCCACCCTCTCCCTTCTCACGGCCCCAATCATCCTCTCCACCTCTCTCATCTCCTCCCCCAACTCCTTCATCGCCATCCGCTTTCTCGCTGGCTTCTCCCTCGCCAACTTCGTCGCCAACCAGTTCTGGATGAGCAGCATGTTCTCGGGATGCGTTGTCGGCCTCGCCAACGGCTTCTCTGCCGGTTGGGCCAACATGGGCTCCGGCGTCACCCAGATGGTCATGCCACTCATTTATTCTTTCATCATGTCATTCGACGTGCCTTCCTCCACTGCTTGGAGGCTAGCGTTTTTCGTGCCAGCAATTTTTCAAACTGTGACTGCCCTATTGGTCCTGGCGTTTGGCCAAGACCTACCTTCTGGGAGCTACAAACGCTCTCAGAAGATCAACAACGGGTCCGAAGAGAGCTTGTTAAGTGTTATTTCTAATGGGGCCAAGAATTATAGAGCATGGATTTTGGCGTTGACTTATGCCTTCAGTTTTGGGGTGGAGTTGACTACTGATAATATCATAGCTGAGTATTTCTACGACAGATTTGGTGTGAATCTTGAGGTGGCGGGGATCATAGCGGCCAGCTTCGGTATGGCGAATTTCTTTTCGAGGCCGAGCGGCGGGTTGGTTTCCGATAGGCTGGCGAGGAGGTTCGGGATGAGGGGGAGGTTGTGGGGGTTGTGGGTGGCGCAGACGGTGGCGGGGTTGTTGTGCTTATTACTCGGGCGAGTCAACTCGCTCTGGGGATCCATACTTGTCATGTGTGCGTTTTCTGTCTTTGTACAAGCTGCTGCCGGGCTAACGTTTGGTGTGGTGCCCTTTGTGTCCAAAAGATCACTTGATCCGGTGGCTTTGATGGAAGAGATCCGGAGATAA

Protein Analysis

399

Amino Acids

43.22

Weight (kDa)

6.32

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 48 - 372 2e-25 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1135
AccB7I CCANNNNNTGG 2 cut(s) 124, 606
AccBSI CCGCTC 1 cut(s) 939
AccIII TCCGGA 1 cut(s) 1188
AclI AACGTT 1 cut(s) 1124
AclWI GGATC 5 cut(s) 899, 1062, 1075, 1157, 1180
AcoI YGGCCR 2 cut(s) 673, 900
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 790
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 1 cut(s) 1104
AfiI CCNNNNNNNGG 4 cut(s) 124, 349, 606, 941
AgsI TTSAA 3 cut(s) 56, 105, 641
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 6 cut(s) 8, 696, 738, 845, 906, 1109
AluI AGCT 6 cut(s) 8, 696, 738, 845, 906, 1109
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 5 cut(s) 899, 1062, 1075, 1157, 1180
Ama87I CYCGRG 2 cut(s) 475, 1043
Aor13HI TCCGGA 1 cut(s) 1188
ApeKI GCWGC 3 cut(s) 465, 1109, 1112
ApoI RAATTY 1 cut(s) 919
AspLEI GCGC 2 cut(s) 112, 1012
AspS9I GGNCC 7 cut(s) 293, 314, 352, 519, 661, 726, 762
AsuC2I CCSGG 1 cut(s) 1117
AsuHPI GGTGA 2 cut(s) 214, 532
AsuNHI GCTAGC 1 cut(s) 613
AvaI CYCGRG 2 cut(s) 475, 1043
AvaII GGWCC 3 cut(s) 293, 661, 726
BaeGI GKGCMC 1 cut(s) 1140
BalI TGGCCA 1 cut(s) 675
BamHI GGATCC 1 cut(s) 1067
BanI GGYRCC 1 cut(s) 1135
BanII GRGCYC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 477, 1096, 1099
BccI CCATC 6 cut(s) 188, 278, 335, 413, 541, 1171
BceAI ACGGC 3 cut(s) 182, 366, 517
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 665
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 1117
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 614
BfoI RGCGCY 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 518
BisI GCNGC 6 cut(s) 255, 466, 900, 940, 1110, 1113
BlsI GCNGC 6 cut(s) 256, 467, 901, 941, 1111, 1114
Bme1390I CCNGG 2 cut(s) 665, 1117
Bme18I GGWCC 3 cut(s) 293, 661, 726
BmeT110I CYCGRG 2 cut(s) 475, 1043
BmgBI CACGTC 1 cut(s) 589
BmgT120I GGNCC 7 cut(s) 293, 314, 352, 519, 661, 726, 762
BmiI GGNNCC 9 cut(s) 268, 294, 316, 354, 532, 727, 763, 1069, 1137
BmrFI CCNGG 2 cut(s) 665, 1117
BmsI GCATC 3 cut(s) 58, 330, 470
BmtI GCTAGC 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 1 cut(s) 1117
BsaBI GATNNNNATC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 2 cut(s) 1165, 1188
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 515, 545
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 349, 606, 941
Bse118I RCCGGY 3 cut(s) 236, 245, 512
Bse1I ACTGG 2 cut(s) 62, 451
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 1188
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 7 cut(s) 180, 201, 360, 405, 465, 485, 984
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 4 cut(s) 124, 349, 606, 941
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 722, 837
BseNI ACTGG 2 cut(s) 62, 451
BseRI GAGGAG 3 cut(s) 182, 373, 982
BseSI GKGCMC 1 cut(s) 1140
BseXI GCAGC 3 cut(s) 477, 1096, 1099
BshNI GGYRCC 1 cut(s) 1135
BsiHKCI CYCGRG 2 cut(s) 475, 1043
BsiSI CCGG 7 cut(s) 237, 246, 513, 534, 1116, 1166, 1189
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 124, 349, 606, 941
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 306
BsoBI CYCGRG 2 cut(s) 475, 1043
Bsp1286I GDGCHC 2 cut(s) 533, 1140
Bsp13I TCCGGA 1 cut(s) 1188
Bsp1407I TGTACA 1 cut(s) 1102
Bsp143I GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
Bsp19I CCATGG 1 cut(s) 288
BspCNI CTCAG 2 cut(s) 721, 838
BspEI TCCGGA 1 cut(s) 1188
BspLI GGNNCC 9 cut(s) 268, 294, 316, 354, 532, 727, 763, 1069, 1137
BspOI GCTAGC 1 cut(s) 617
BspPI GGATC 5 cut(s) 899, 1062, 1075, 1157, 1180
BspT107I GGYRCC 1 cut(s) 1135
BsrBI CCGCTC 1 cut(s) 939
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 3 cut(s) 236, 245, 512
BsrGI TGTACA 1 cut(s) 1102
BsrI ACTGG 2 cut(s) 62, 451
BssAI RCCGGY 3 cut(s) 236, 245, 512
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 646, 1018
Bst6I CTCTTC 3 cut(s) 158, 726, 1176
BstACI GRCGYC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 1102
BstC8I GCNNGC 7 cut(s) 126, 247, 421, 615, 630, 904, 963
BstDEI CTNAG 2 cut(s) 708, 846
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 7 cut(s) 180, 201, 360, 405, 465, 485, 984
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 2 cut(s) 112, 1012
BstKTI GATC 8 cut(s) 40, 76, 717, 894, 1070, 1157, 1165, 1188
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
BstMWI GCNNNNNNNGC 5 cut(s) 246, 251, 489, 518, 702
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 2 cut(s) 124, 472
BstSCI CCNGG 2 cut(s) 663, 1115
BstSLI GKGCMC 1 cut(s) 1140
BstV1I GCAGC 3 cut(s) 477, 1096, 1099
BstX2I RGATCY 2 cut(s) 1067, 1185
BstYI RGATCY 2 cut(s) 1067, 1185
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 3 cut(s) 307, 313, 385
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 7 cut(s) 180, 201, 360, 405, 465, 485, 984
BtsI GCAGTG 2 cut(s) 249, 600
BtsIMutI CAGTG 2 cut(s) 249, 600
Cac8I GCNNGC 7 cut(s) 126, 247, 421, 615, 630, 904, 963
CfoI GCGC 2 cut(s) 112, 1012
Cfr10I RCCGGY 3 cut(s) 236, 245, 512
Cfr13I GGNCC 7 cut(s) 293, 314, 352, 519, 661, 726, 762
CseI GACGC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 1103
CviAII CATG 9 cut(s) 121, 141, 289, 469, 526, 553, 577, 780, 1081
CviQI GTAC 1 cut(s) 1103
DdeI CTNAG 2 cut(s) 708, 846
DpnI GATC 8 cut(s) 39, 75, 716, 893, 1069, 1156, 1164, 1187
DpnII GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
EaeI YGGCCR 2 cut(s) 673, 900
Eam1104I CTCTTC 3 cut(s) 158, 726, 1176
EarI CTCTTC 3 cut(s) 158, 726, 1176
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 293, 661, 726
Eco57I CTGAAG 1 cut(s) 790
Eco88I CYCGRG 2 cut(s) 475, 1043
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 9 cut(s) 124, 144, 292, 472, 529, 556, 580, 783, 1084
FaqI GGGAC 1 cut(s) 306
FatI CATG 9 cut(s) 120, 140, 288, 468, 525, 552, 576, 779, 1080
FauI CCCGC 5 cut(s) 287, 326, 880, 935, 1015
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 6 cut(s) 255, 466, 900, 940, 1110, 1113
FokI GGATG 7 cut(s) 167, 188, 347, 392, 472, 492, 991
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 6 cut(s) 255, 466, 900, 940, 1110, 1113
FspBI CTAG 1 cut(s) 614
GlaI GCGC 2 cut(s) 111, 1011
GluI GCNGC 6 cut(s) 255, 466, 900, 940, 1110, 1113
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 7 cut(s) 237, 246, 513, 534, 1116, 1166, 1189
HgaI GACGC 1 cut(s) 526
HhaI GCGC 2 cut(s) 112, 1012
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 9 cut(s) 124, 144, 292, 472, 529, 556, 580, 783, 1084
Hin6I GCGC 2 cut(s) 110, 1010
HinP1I GCGC 2 cut(s) 110, 1010
HincII GTYRAC 3 cut(s) 795, 825, 1054
HindII GTYRAC 3 cut(s) 795, 825, 1054
HinfI GANTC 2 cut(s) 874, 1050
HpaII CCGG 7 cut(s) 237, 246, 513, 534, 1116, 1166, 1189
HphI GGTGA 2 cut(s) 214, 532
Hpy166II GTNNAC 3 cut(s) 795, 825, 1054
Hpy188I TCNGA 3 cut(s) 711, 730, 955
Hpy188III TCNNGA 5 cut(s) 457, 477, 878, 976, 1189
Hpy8I GTNNAC 3 cut(s) 795, 825, 1054
Hpy99I CGWCG 3 cut(s) 266, 446, 590
HpyAV CCTTC 8 cut(s) 139, 184, 268, 353, 406, 603, 696, 814
HpyCH4III ACNGT 2 cut(s) 646, 1018
HpyCH4IV ACGT 2 cut(s) 588, 1124
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 251, 489, 518, 702
HpyF3I CTNAG 2 cut(s) 708, 846
HpySE526I ACGT 2 cut(s) 588, 1124
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 9 cut(s) 124, 144, 292, 472, 529, 556, 580, 783, 1084
HspAI GCGC 2 cut(s) 110, 1010
Kpn2I TCCGGA 1 cut(s) 1188
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
LmnI GCTCC 3 cut(s) 272, 536, 693
Lsp1109I GCAGC 3 cut(s) 477, 1096, 1099
LweI GCATC 3 cut(s) 58, 330, 470
MaeI CTAG 1 cut(s) 614
MaeII ACGT 2 cut(s) 588, 1124
MaeIII GTNAC 2 cut(s) 538, 646
MalI GATC 8 cut(s) 39, 75, 716, 893, 1069, 1156, 1164, 1187
MbiI CCGCTC 1 cut(s) 939
MboI GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
MboII GAAGA 6 cut(s) 32, 145, 157, 724, 743, 1193
MflI RGATCY 2 cut(s) 1067, 1185
MhlI GDGCHC 2 cut(s) 533, 1140
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 3 cut(s) 633, 769, 919
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 1 cut(s) 1059
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 675
MroI TCCGGA 1 cut(s) 1188
MroNI GCCGGC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 675
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 2 cut(s) 287, 545
Msp20I TGGCCA 1 cut(s) 675
MspI CCGG 7 cut(s) 237, 246, 513, 534, 1116, 1166, 1189
MspR9I CCNGG 2 cut(s) 665, 1117
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 5 cut(s) 246, 251, 489, 518, 702
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 1117
NcoI CCATGG 1 cut(s) 288
NdeII GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
NgoMIV GCCGGC 1 cut(s) 245
NheI GCTAGC 1 cut(s) 613
NlaIII CATG 9 cut(s) 124, 144, 292, 472, 529, 556, 580, 783, 1084
NlaIV GGNNCC 9 cut(s) 268, 294, 316, 354, 532, 727, 763, 1069, 1137
NmeAIII GCCGAG 1 cut(s) 960
NmuCI GTSAC 2 cut(s) 538, 646
NspI RCATGY 2 cut(s) 124, 472
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 438
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 874
PflMI CCANNNNNTGG 2 cut(s) 124, 606
PkrI GCNGC 6 cut(s) 256, 467, 901, 941, 1111, 1114
PleI GAGTC 1 cut(s) 1058
PpsI GAGTC 1 cut(s) 1058
PpuMI RGGWCCY 1 cut(s) 293
Psp1406I AACGTT 1 cut(s) 1124
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 9 cut(s) 268, 294, 316, 354, 532, 727, 763, 1069, 1137
PspPI GGNCC 7 cut(s) 293, 314, 352, 519, 661, 726, 762
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 2 cut(s) 1067, 1185
RsaI GTAC 1 cut(s) 1104
RsaNI GTAC 1 cut(s) 1103
RseI CAYNNNNRTG 2 cut(s) 287, 545
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 6 cut(s) 255, 466, 900, 940, 1110, 1113
Sau3AI GATC 8 cut(s) 37, 73, 714, 891, 1067, 1154, 1162, 1185
Sau96I GGNCC 7 cut(s) 293, 314, 352, 519, 661, 726, 762
SchI GAGTC 1 cut(s) 1059
ScrFI CCNGG 2 cut(s) 665, 1117
SduI GDGCHC 2 cut(s) 533, 1140
SfaNI GCATC 3 cut(s) 58, 330, 470
SinI GGWCC 3 cut(s) 293, 661, 726
SmiMI CAYNNNNRTG 2 cut(s) 287, 545
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 3 cut(s) 633, 769, 919
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 663, 1115
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 646, 1018
TaiI ACGT 2 cut(s) 591, 1127
TaqI TCGA 2 cut(s) 585, 929
TasI AATT 3 cut(s) 633, 769, 919
TatI WGTACW 1 cut(s) 1102
TauI GCSGC 3 cut(s) 257, 902, 942
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 2 cut(s) 256, 607
TseFI GTSAC 2 cut(s) 538, 646
TseI GCWGC 3 cut(s) 465, 1109, 1112
Tsp45I GTSAC 2 cut(s) 538, 646
TspDTI ATGAA 2 cut(s) 388, 562
TspRI CASTG 2 cut(s) 256, 607
Van91I CCANNNNNTGG 2 cut(s) 124, 606
VpaK11BI GGWCC 3 cut(s) 293, 661, 726
XapI RAATTY 1 cut(s) 919
XceI RCATGY 2 cut(s) 124, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.