Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8072536.1

Orthogroup ID

OG0012097

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 577

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8072536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ctcctcgccgtcatccgcgacgacctccacctcaccgaaaccgacacctcacgcgccgccatcgcagccttcatcggctccatcttctcccgcattgccatgggccccatctgcgaccacctaggcccacgcgtcgcctctgccaccctctccctcctcacctcccccatcatcctcggcaccgccctcgtctcctccccaaacgccttcatcaccatccgcttcctcgtcggcttctccctcgccaacttcgtcgccaaccagttctggatgagccgcatgttctcaggctgcgtcgtcggcctcgccaatggggtctccgccggctgggccaacacgggcgccggcgccacccagcttgtcatgccactcatctactcctttatcatgtcagcattcaacttgccatcctccgctgcctggcgactgtcatatatagtccccgccgtgctccaagccagcacagctgtactggtcctgacctacggccaggacttaccttctggaagctacaaacgtacctccaagaagggctcgaaagacagctttttcgaggtcttcttccacgggataaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

192

Amino Acids

20.43

Weight (kDa)

9.56

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14570
fragaria_vesca	FvH4_6g51160
malus_domestica	MD09G1028900.v1.1 MD17G1030600.v1.1
prunus_persica	Prupe.3G289200_v2.0.a1
pyrus_communis	pycom111g02290 pycom17g02800 pycom17g02810
rosa_chinensis	RchiOBHm_Chr2g0172751
rosa_laevigata	RLG00000022130
rosa_multiflora	Rmu_co8072536.1_g000001 Rmu_sc0010744.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079560
rosa_rugosa	Rorug02G0561200
rosa_samantha	Rh2AG638400 Rh2BG652000 Rh2CG618300 Rh2DG666000
rosa_wichuraiana	Rw2G052740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	179, 341, 347
AccII	CGCG	3 cut(s)	18, 54, 132
AciI	CCGC	9 cut(s)	16, 57, 91, 183, 220, 277, 321, 414, 444
AcoI	YGGCCR	1 cut(s)	487
AcyI	GRCGYC	2 cut(s)	342, 348
AfaI	GTAC	2 cut(s)	471, 520
AfiI	CCNNNNNNNGG	2 cut(s)	327, 420
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	2 cut(s)	419, 489
AluBI	AGCT	4 cut(s)	358, 467, 510, 546
AluI	AGCT	4 cut(s)	358, 467, 510, 546
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	196, 322
AoxI	GGCC	5 cut(s)	103, 124, 301, 330, 487
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	65, 291, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AspA2I	CCTAGG	1 cut(s)	121
AspLEI	GCGC	3 cut(s)	56, 344, 350
AspS9I	GGNCC	5 cut(s)	103, 104, 125, 330, 475
AsuHPI	GGTGA	3 cut(s)	25, 151, 205
AvaII	GGWCC	1 cut(s)	475
AvrII	CCTAGG	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	502, 535
BanI	GGYRCC	3 cut(s)	179, 341, 347
BanII	GRGCYC	2 cut(s)	107, 536
BbsI	GAAGAC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	77, 278, 403
BccI	CCATC	6 cut(s)	68, 89, 116, 176, 224, 415
BceAI	ACGGC	2 cut(s)	431, 502
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	2 cut(s)	421, 491
BcoDI	GTCTC	2 cut(s)	196, 322
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	2 cut(s)	345, 351
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	5 cut(s)	57, 66, 277, 292, 417
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	5 cut(s)	58, 67, 278, 293, 418
Bme1390I	CCNGG	2 cut(s)	421, 491
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	5 cut(s)	103, 104, 125, 330, 475
BmiI	GGNNCC	6 cut(s)	79, 105, 106, 181, 343, 349
BmrFI	CCNGG	2 cut(s)	421, 491
BpiI	GAAGAC	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	342, 348
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	99, 121, 175, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 420
Bse118I	RCCGGY	2 cut(s)	323, 344
Bse1I	ACTGG	2 cut(s)	262, 477
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	421, 491
BseDI	CCNNGG	4 cut(s)	99, 121, 175, 565
BseGI	GGATG	5 cut(s)	12, 171, 216, 276, 407
BseLI	CCNNNNNNNGG	2 cut(s)	327, 420
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	262, 477
BseRI	GAGGAG	2 cut(s)	146, 184
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	77, 278, 403
BseYI	CCCAGC	2 cut(s)	327, 354
Bsh1236I	CGCG	3 cut(s)	18, 54, 132
BshFI	GGCC	5 cut(s)	105, 126, 303, 332, 489
BshNI	GGYRCC	3 cut(s)	179, 341, 347
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	2 cut(s)	324, 345
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	327, 420
BsmAI	GTCTC	2 cut(s)	196, 322
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	5 cut(s)	105, 126, 303, 332, 489
Bso31I	GGTCTC	1 cut(s)	322
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	107, 453, 536
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	9 cut(s)	16, 57, 91, 183, 220, 277, 321, 414, 444
BspANI	GGCC	5 cut(s)	105, 126, 303, 332, 489
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	3 cut(s)	18, 54, 132
BspLI	GGNNCC	6 cut(s)	79, 105, 106, 181, 343, 349
BspT107I	GGYRCC	3 cut(s)	179, 341, 347
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	2 cut(s)	323, 344
BsrI	ACTGG	2 cut(s)	262, 477
BssAI	RCCGGY	2 cut(s)	323, 344
BssECI	CCNNGG	4 cut(s)	99, 121, 175, 565
BssNI	GRCGYC	2 cut(s)	342, 348
BssT1I	CCWWGG	2 cut(s)	99, 121
Bst2UI	CCWGG	2 cut(s)	421, 491
Bst4CI	ACNGT	1 cut(s)	429
BstACI	GRCGYC	2 cut(s)	342, 348
BstC8I	GCNNGC	3 cut(s)	325, 346, 460
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	2 cut(s)	99, 565
BstF5I	GGATG	5 cut(s)	12, 171, 216, 276, 407
BstFNI	CGCG	3 cut(s)	18, 54, 132
BstH2I	RGCGCY	2 cut(s)	345, 351
BstHHI	GCGC	3 cut(s)	56, 344, 350
BstMAI	GTCTC	2 cut(s)	196, 322
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 65, 111, 300, 329, 364, 464
BstNI	CCWGG	2 cut(s)	421, 491
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	419, 489
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	3 cut(s)	18, 54, 132
BstV1I	GCAGC	3 cut(s)	77, 278, 403
BstV2I	GAAGAC	1 cut(s)	550
BsuRI	GGCC	5 cut(s)	105, 126, 303, 332, 489
BtgI	CCRYGG	2 cut(s)	99, 565
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	5 cut(s)	12, 171, 216, 276, 407
Cac8I	GCNNGC	3 cut(s)	325, 346, 460
CfoI	GCGC	3 cut(s)	56, 344, 350
Cfr10I	RCCGGY	2 cut(s)	323, 344
Cfr13I	GGNCC	5 cut(s)	103, 104, 125, 330, 475
CseI	GACGC	2 cut(s)	121, 283
Csp6I	GTAC	2 cut(s)	470, 519
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	4 cut(s)	100, 280, 364, 388
CviQI	GTAC	2 cut(s)	470, 519
DdeI	CTNAG	1 cut(s)	286
DinI	GGCGCC	2 cut(s)	343, 349
EaeI	YGGCCR	1 cut(s)	487
EciI	GGCGGA	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	99, 121
Eco24I	GRGCYC	2 cut(s)	107, 536
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	419, 489
EcoT14I	CCWWGG	2 cut(s)	99, 121
EcoT38I	GRGCYC	2 cut(s)	107, 536
EgeI	GGCGCC	2 cut(s)	343, 349
EheI	GGCGCC	2 cut(s)	343, 349
ErhI	CCWWGG	2 cut(s)	99, 121
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	4 cut(s)	103, 283, 367, 391
FaiI	YATR	7 cut(s)	101, 281, 365, 389, 433, 435, 437
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	99, 279, 363, 387
FauI	CCCGC	2 cut(s)	98, 451
Fnu4HI	GCNGC	5 cut(s)	57, 66, 277, 292, 417
FokI	GGATG	4 cut(s)	158, 203, 283, 394
FriOI	GRGCYC	2 cut(s)	107, 536
Fsp4HI	GCNGC	5 cut(s)	57, 66, 277, 292, 417
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	3 cut(s)	55, 343, 349
GluI	GCNGC	5 cut(s)	57, 66, 277, 292, 417
GsaI	CCCAGC	2 cut(s)	331, 358
HaeII	RGCGCY	2 cut(s)	345, 351
HaeIII	GGCC	5 cut(s)	105, 126, 303, 332, 489
HapII	CCGG	2 cut(s)	324, 345
HgaI	GACGC	2 cut(s)	121, 283
HhaI	GCGC	3 cut(s)	56, 344, 350
Hin1I	GRCGYC	2 cut(s)	342, 348
Hin1II	CATG	4 cut(s)	103, 283, 367, 391
Hin6I	GCGC	3 cut(s)	54, 342, 348
HinP1I	GCGC	3 cut(s)	54, 342, 348
HpaII	CCGG	2 cut(s)	324, 345
HphI	GGTGA	3 cut(s)	25, 151, 205
Hpy188III	TCNNGA	3 cut(s)	268, 478, 504
Hpy99I	CGWCG	6 cut(s)	23, 137, 233, 257, 299, 302
HpyAV	CCTTC	4 cut(s)	79, 217, 510, 523
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 65, 111, 300, 329, 364, 464
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	517
Hsp92I	GRCGYC	2 cut(s)	342, 348
Hsp92II	CATG	4 cut(s)	103, 283, 367, 391
HspAI	GCGC	3 cut(s)	54, 342, 348
KasI	GGCGCC	2 cut(s)	341, 347
KroI	GCCGGC	2 cut(s)	323, 344
KroNI	GCCGGC	2 cut(s)	325, 346
LmnI	GCTCC	2 cut(s)	83, 456
Lsp1109I	GCAGC	3 cut(s)	77, 278, 403
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	517
MboII	GAAGA	3 cut(s)	76, 550, 553
MhlI	GDGCHC	3 cut(s)	107, 453, 536
MluI	ACGCGT	1 cut(s)	130
Mly113I	GGCGCC	2 cut(s)	342, 348
MreI	CGCCGGCG	1 cut(s)	344
MroNI	GCCGGC	2 cut(s)	323, 344
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	2 cut(s)	416, 467
MspI	CCGG	2 cut(s)	324, 345
MspR9I	CCNGG	2 cut(s)	421, 491
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	421, 491
MvnI	CGCG	3 cut(s)	18, 54, 132
MwoI	GCNNNNNNNGC	7 cut(s)	62, 65, 111, 300, 329, 364, 464
NaeI	GCCGGC	2 cut(s)	325, 346
NarI	GGCGCC	2 cut(s)	342, 348
NcoI	CCATGG	1 cut(s)	99
NgoMIV	GCCGGC	2 cut(s)	323, 344
NlaIII	CATG	4 cut(s)	103, 283, 367, 391
NlaIV	GGNNCC	6 cut(s)	79, 105, 106, 181, 343, 349
NmeAIII	GCCGAG	1 cut(s)	156
NspI	RCATGY	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	395
PdiI	GCCGGC	2 cut(s)	325, 346
PkrI	GCNGC	5 cut(s)	58, 67, 278, 293, 418
PluTI	GGCGCC	2 cut(s)	345, 351
Psp6I	CCWGG	2 cut(s)	419, 489
PspFI	CCCAGC	2 cut(s)	327, 354
PspGI	CCWGG	2 cut(s)	419, 489
PspN4I	GGNNCC	6 cut(s)	79, 105, 106, 181, 343, 349
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	5 cut(s)	103, 104, 125, 330, 475
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	471, 520
RsaNI	GTAC	2 cut(s)	470, 519
RseI	CAYNNNNRTG	1 cut(s)	98
SatI	GCNGC	5 cut(s)	57, 66, 277, 292, 417
Sau96I	GGNCC	5 cut(s)	103, 104, 125, 330, 475
ScrFI	CCNGG	2 cut(s)	421, 491
SduI	GDGCHC	3 cut(s)	107, 453, 536
SfoI	GGCGCC	2 cut(s)	343, 349
SgrAI	CRCCGGYG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	98
SsiI	CCGC	9 cut(s)	16, 57, 91, 183, 220, 277, 321, 414, 444
SspDI	GGCGCC	2 cut(s)	341, 347
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	419, 489
StyI	CCWWGG	2 cut(s)	99, 121
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	536, 552
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	2 cut(s)	59, 279
TseI	GCWGC	3 cut(s)	65, 291, 416
TspDTI	ATGAA	2 cut(s)	61, 199
VpaK11BI	GGWCC	1 cut(s)	475
XceI	RCATGY	1 cut(s)	283
XmaJI	CCTAGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.