Rh2DG666000

High affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
89094830 .. 89095993
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG666000.1

Sequence Viewer

Length: 1164 bp
ATGGAAGATGAACACGCCCCTGAACAAGTTCCACTAAAACAAGCTATCCCTGCTCATCTCTTTGCTTTACCAGTTGATGAAGATGGAAAAGCCACAGAATTCAGACCATTCTCAATGGCATCACCACACATGCGAGCCTTCCACCTCGCATGGTTCTCTTTATTCTCTTGCTTCTTCTCCACCTTCTCCATCCCTCCACTCCTCGCCGTCATCCGCGACGACCTCCACCTCACCGAAACCGACACCTCACGCGCCGCCATCGCAGCCTTCATCGGCTCCATCTTCTCCCGCATTGCCATGGGCCCCATCTGCGACCACCTAGGCCCACGCGTCGCCTCTGCCACCCTCTCCCTCCTCACCTCCCCCATCATCCTCGGCACCGCCCTCGTCTCCTCCCCAAACGCCTTCATCACCATCCGCTTCCTCGTCGGCTTCTCCCTCGCCAACTTCGTCGCCAACCAGTTCTGGATGAGCCGCATGTTCTCAGGCTGCGTCGTCGGCCTCGCCAATGGGGTCTCCGCCGGCTGGGCCAACACCGGCGCCGGCGCCACCCAGCTTGTCATGCCACTCATCTACTCCTTTATCATGTCAGCATTCAACTTGCCATCCTCCGCTGCCTGGCGACTGTCATATATAGTCCCCGCCGTGCTCCAAGCCAGCACAGCTGTACTGGTCCTGACCTACGGCCAGGACTTACCTTCTGGAAGCTACAAACGTACCTCCAAGAAGGGCTCGAAAGACAGCTTTTTCGAGGTCTTCTTCCACGGGATAAAAAACTACAGAGGTTGGATCTTGGCTTTGACCTACGGGTTTTCCTTCGGTGTGGAGCTGACCACTGACAACATCATTGCTCAGTACTTCTACGACAGGTTCGGCGTGAACATTCAGGTGGCCGGAACCATAGCTTCCTGCTTCGGATTGGCGAACTTCTTTTCCAGGCCGAGCGGGGGTTTGTTTTCCGATATGTTGGGGAGGAGGTTCGGGATGAGAGGGAGGCTGTGGGGTTTGTGGGCGACGCAAACTGTGGCGGGTTTGCTGTGCTTGTTACTCGGCCGAGTTAACTCTCTCTGGAGCTCCATACTTGTCATGTGTGTGTTCTCAGTTTTTGTTCAGGCCGCCGCGGGACTCACGTTTGGGGTGGTTCCATTTGTTTCCAAAAGGTAA

Protein Analysis

387

Amino Acids

42.1

Weight (kDa)

9.21

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 51 - 374 4.8e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012097)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 377, 539, 545
AccBSI CCGCTC 1 cut(s) 945
AccII CGCG 4 cut(s) 216, 252, 330, 1121
AclWI GGATC 1 cut(s) 797
AcoI YGGCCR 3 cut(s) 685, 891, 1051
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 2 cut(s) 540, 546
AfaI GTAC 3 cut(s) 669, 718, 857
AfiI CCNNNNNNNGG 3 cut(s) 525, 618, 947
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 598
AjnI CCWGG 3 cut(s) 617, 687, 935
AloI GAACNNNNNNTCC 2 cut(s) 917, 949
AluBI AGCT 8 cut(s) 44, 556, 665, 708, 744, 829, 905, 1074
AluI AGCT 8 cut(s) 44, 556, 665, 708, 744, 829, 905, 1074
Alw21I GWGCWC 2 cut(s) 651, 1076
Alw26I GTCTC 2 cut(s) 394, 520
AlwI GGATC 1 cut(s) 797
AoxI GGCC 9 cut(s) 301, 322, 499, 528, 685, 891, 938, 1051, 1113
ApaI GGGCCC 1 cut(s) 305
ApeKI GCWGC 3 cut(s) 263, 489, 614
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 319
AspLEI GCGC 3 cut(s) 254, 542, 548
AspS9I GGNCC 5 cut(s) 301, 302, 323, 528, 673
AsuHPI GGTGA 4 cut(s) 114, 223, 349, 403
AvaII GGWCC 1 cut(s) 673
AvrII CCTAGG 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BanI GGYRCC 3 cut(s) 377, 539, 545
BanII GRGCYC 3 cut(s) 305, 734, 1076
BbsI GAAGAC 1 cut(s) 748
Bbv12I GWGCWC 2 cut(s) 651, 1076
BbvI GCAGC 3 cut(s) 275, 476, 601
BccI CCATC 8 cut(s) 77, 197, 266, 287, 314, 374, 422, 613
BceAI ACGGC 3 cut(s) 191, 629, 700
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 3 cut(s) 619, 689, 937
BcoDI GTCTC 2 cut(s) 394, 520
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 778
BfoI RGCGCY 2 cut(s) 543, 549
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 7 cut(s) 255, 264, 475, 490, 615, 1116, 1119
BlnI CCTAGG 1 cut(s) 319
BlsI GCNGC 7 cut(s) 256, 265, 476, 491, 616, 1117, 1120
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 3 cut(s) 619, 689, 937
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 5 cut(s) 301, 302, 323, 528, 673
BmiI GGNNCC 8 cut(s) 277, 303, 304, 379, 541, 547, 898, 1143
BmrFI CCNGG 3 cut(s) 619, 689, 937
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 748
BpmI CTGGAG 1 cut(s) 1090
BsaHI GRCGYC 2 cut(s) 540, 546
BsaI GGTCTC 1 cut(s) 520
BsaJI CCNNGG 5 cut(s) 297, 319, 373, 763, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 618, 947
Bse118I RCCGGY 3 cut(s) 521, 536, 542
Bse1I ACTGG 3 cut(s) 71, 460, 675
Bse3DI GCAATG 2 cut(s) 291, 846
BseBI CCWGG 3 cut(s) 619, 689, 937
BseDI CCNNGG 5 cut(s) 297, 319, 373, 763, 1119
BseGI GGATG 7 cut(s) 189, 210, 369, 414, 474, 605, 990
BseLI CCNNNNNNNGG 3 cut(s) 525, 618, 947
BseMI GCAATG 2 cut(s) 291, 846
BseMII CTCAG 3 cut(s) 498, 866, 1113
BseNI ACTGG 3 cut(s) 71, 460, 675
BseRI GAGGAG 4 cut(s) 191, 344, 382, 988
BseSI GKGCMC 1 cut(s) 305
BseX3I CGGCCG 1 cut(s) 1051
BseXI GCAGC 3 cut(s) 275, 476, 601
BseYI CCCAGC 2 cut(s) 525, 552
Bsh1236I CGCG 4 cut(s) 216, 252, 330, 1121
Bsh1285I CGRYCG 1 cut(s) 1054
BshFI GGCC 9 cut(s) 303, 324, 501, 530, 687, 893, 940, 1053, 1115
BshNI GGYRCC 3 cut(s) 377, 539, 545
BsiEI CGRYCG 1 cut(s) 1054
BsiHKAI GWGCWC 2 cut(s) 651, 1076
BsiSI CCGG 4 cut(s) 522, 537, 543, 894
BslFI GGGAC 2 cut(s) 623, 1137
BslI CCNNNNNNNGG 3 cut(s) 525, 618, 947
BsmAI GTCTC 2 cut(s) 394, 520
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 2 cut(s) 623, 1137
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 9 cut(s) 303, 324, 501, 530, 687, 893, 940, 1053, 1115
Bso31I GGTCTC 1 cut(s) 520
Bsp120I GGGCCC 1 cut(s) 301
Bsp1286I GDGCHC 4 cut(s) 305, 651, 734, 1076
Bsp143I GATC 1 cut(s) 789
Bsp19I CCATGG 1 cut(s) 297
BspANI GGCC 9 cut(s) 303, 324, 501, 530, 687, 893, 940, 1053, 1115
BspCNI CTCAG 3 cut(s) 497, 865, 1112
BspFNI CGCG 4 cut(s) 216, 252, 330, 1121
BspLI GGNNCC 8 cut(s) 277, 303, 304, 379, 541, 547, 898, 1143
BspPI GGATC 1 cut(s) 797
BspT107I GGYRCC 3 cut(s) 377, 539, 545
BspTNI GGTCTC 1 cut(s) 520
BsrBI CCGCTC 1 cut(s) 945
BsrDI GCAATG 2 cut(s) 291, 846
BsrFI RCCGGY 3 cut(s) 521, 536, 542
BsrI ACTGG 3 cut(s) 71, 460, 675
BssAI RCCGGY 3 cut(s) 521, 536, 542
BssECI CCNNGG 5 cut(s) 297, 319, 373, 763, 1119
BssMI GATC 1 cut(s) 789
BssNI GRCGYC 2 cut(s) 540, 546
BssT1I CCWWGG 2 cut(s) 297, 319
Bst2UI CCWGG 3 cut(s) 619, 689, 937
Bst4CI ACNGT 2 cut(s) 627, 1024
BstACI GRCGYC 2 cut(s) 540, 546
BstC8I GCNNGC 4 cut(s) 135, 523, 544, 658
BstDEI CTNAG 3 cut(s) 484, 852, 1099
BstDSI CCRYGG 3 cut(s) 297, 763, 1119
BstF5I GGATG 7 cut(s) 189, 210, 369, 414, 474, 605, 990
BstFNI CGCG 4 cut(s) 216, 252, 330, 1121
BstH2I RGCGCY 2 cut(s) 543, 549
BstHHI GCGC 3 cut(s) 254, 542, 548
BstKTI GATC 1 cut(s) 792
BstMAI GTCTC 2 cut(s) 394, 520
BstMBI GATC 1 cut(s) 789
BstMCI CGRYCG 1 cut(s) 1054
BstMWI GCNNNNNNNGC 8 cut(s) 50, 260, 263, 309, 498, 527, 562, 662
BstNI CCWGG 3 cut(s) 619, 689, 937
BstNSI RCATGY 2 cut(s) 133, 481
BstSCI CCNGG 3 cut(s) 617, 687, 935
BstSFI CTRYAG 1 cut(s) 778
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 4 cut(s) 216, 252, 330, 1121
BstV1I GCAGC 3 cut(s) 275, 476, 601
BstV2I GAAGAC 1 cut(s) 748
BstX2I RGATCY 1 cut(s) 789
BstYI RGATCY 1 cut(s) 789
BstZI CGGCCG 1 cut(s) 1051
BsuRI GGCC 9 cut(s) 303, 324, 501, 530, 687, 893, 940, 1053, 1115
BtgI CCRYGG 3 cut(s) 297, 763, 1119
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 7 cut(s) 189, 210, 369, 414, 474, 605, 990
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 4 cut(s) 135, 523, 544, 658
CfoI GCGC 3 cut(s) 254, 542, 548
Cfr10I RCCGGY 3 cut(s) 521, 536, 542
Cfr13I GGNCC 5 cut(s) 301, 302, 323, 528, 673
Cfr42I CCGCGG 1 cut(s) 1122
CseI GACGC 3 cut(s) 319, 481, 1024
Csp6I GTAC 3 cut(s) 668, 717, 856
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 7 cut(s) 130, 150, 298, 478, 562, 586, 1087
CviQI GTAC 3 cut(s) 668, 717, 856
DdeI CTNAG 3 cut(s) 484, 852, 1099
DinI GGCGCC 2 cut(s) 541, 547
DpnI GATC 1 cut(s) 791
DpnII GATC 1 cut(s) 789
EaeI YGGCCR 3 cut(s) 685, 891, 1051
EagI CGGCCG 1 cut(s) 1051
EciI GGCGGA 1 cut(s) 508
Ecl136II GAGCTC 1 cut(s) 1074
EclXI CGGCCG 1 cut(s) 1051
Eco130I CCWWGG 2 cut(s) 297, 319
Eco24I GRGCYC 3 cut(s) 305, 734, 1076
Eco31I GGTCTC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 673
Eco52I CGGCCG 1 cut(s) 1051
Eco53kI GAGCTC 1 cut(s) 1074
EcoICRI GAGCTC 1 cut(s) 1074
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 3 cut(s) 617, 687, 935
EcoT14I CCWWGG 2 cut(s) 297, 319
EcoT38I GRGCYC 3 cut(s) 305, 734, 1076
EgeI GGCGCC 2 cut(s) 541, 547
EheI GGCGCC 2 cut(s) 541, 547
ErhI CCWWGG 2 cut(s) 297, 319
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 7 cut(s) 133, 153, 301, 481, 565, 589, 1090
FaqI GGGAC 2 cut(s) 623, 1137
FatI CATG 7 cut(s) 129, 149, 297, 477, 561, 585, 1086
FauI CCCGC 5 cut(s) 296, 649, 938, 1021, 1114
Fnu4HI GCNGC 7 cut(s) 255, 264, 475, 490, 615, 1116, 1119
FokI GGATG 7 cut(s) 176, 197, 356, 401, 481, 592, 997
FriOI GRGCYC 3 cut(s) 305, 734, 1076
Fsp4HI GCNGC 7 cut(s) 255, 264, 475, 490, 615, 1116, 1119
FspBI CTAG 1 cut(s) 320
GlaI GCGC 3 cut(s) 253, 541, 547
GluI GCNGC 7 cut(s) 255, 264, 475, 490, 615, 1116, 1119
GsaI CCCAGC 2 cut(s) 529, 556
GsuI CTGGAG 1 cut(s) 1090
HaeII RGCGCY 2 cut(s) 543, 549
HaeIII GGCC 9 cut(s) 303, 324, 501, 530, 687, 893, 940, 1053, 1115
HapII CCGG 4 cut(s) 522, 537, 543, 894
HgaI GACGC 3 cut(s) 319, 481, 1024
HhaI GCGC 3 cut(s) 254, 542, 548
Hin1I GRCGYC 2 cut(s) 540, 546
Hin1II CATG 7 cut(s) 133, 153, 301, 481, 565, 589, 1090
Hin6I GCGC 3 cut(s) 252, 540, 546
HinP1I GCGC 3 cut(s) 252, 540, 546
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HinfI GANTC 1 cut(s) 1125
HpaI GTTAAC 1 cut(s) 1060
HpaII CCGG 4 cut(s) 522, 537, 543, 894
HphI GGTGA 4 cut(s) 114, 223, 349, 403
Hpy166II GTNNAC 2 cut(s) 880, 1060
Hpy188I TCNGA 3 cut(s) 104, 917, 961
Hpy188III TCNNGA 5 cut(s) 466, 676, 702, 982, 1069
Hpy8I GTNNAC 2 cut(s) 880, 1060
Hpy99I CGWCG 7 cut(s) 221, 335, 431, 455, 497, 500, 1018
HpyAV CCTTC 7 cut(s) 148, 193, 277, 415, 708, 721, 826
HpyCH4III ACNGT 2 cut(s) 627, 1024
HpyCH4IV ACGT 2 cut(s) 715, 1130
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 260, 263, 309, 498, 527, 562, 662
HpyF3I CTNAG 3 cut(s) 484, 852, 1099
HpySE526I ACGT 2 cut(s) 715, 1130
Hsp92I GRCGYC 2 cut(s) 540, 546
Hsp92II CATG 7 cut(s) 133, 153, 301, 481, 565, 589, 1090
HspAI GCGC 3 cut(s) 252, 540, 546
KasI GGCGCC 2 cut(s) 539, 545
KroI GCCGGC 2 cut(s) 521, 542
KroNI GCCGGC 2 cut(s) 523, 544
KspAI GTTAAC 1 cut(s) 1060
KspI CCGCGG 1 cut(s) 1122
Kzo9I GATC 1 cut(s) 789
LmnI GCTCC 5 cut(s) 281, 654, 826, 1071, 1079
Lsp1109I GCAGC 3 cut(s) 275, 476, 601
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 715, 1130
MaeIII GTNAC 1 cut(s) 1044
MalI GATC 1 cut(s) 791
MbiI CCGCTC 1 cut(s) 945
MboI GATC 1 cut(s) 789
MboII GAAGA 6 cut(s) 17, 92, 166, 274, 748, 751
MflI RGATCY 1 cut(s) 789
MhlI GDGCHC 4 cut(s) 305, 651, 734, 1076
MluCI AATT 1 cut(s) 98
MluI ACGCGT 1 cut(s) 328
Mly113I GGCGCC 2 cut(s) 540, 546
MlyI GAGTC 1 cut(s) 1119
MmeI TCCRAC 1 cut(s) 767
MreI CGCCGGCG 1 cut(s) 542
MroNI GCCGGC 2 cut(s) 521, 542
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 1 cut(s) 1059
MslI CAYNNNNRTG 3 cut(s) 296, 887, 1091
MspA1I CMGCKG 3 cut(s) 614, 665, 1121
MspI CCGG 4 cut(s) 522, 537, 543, 894
MspR9I CCNGG 3 cut(s) 619, 689, 937
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 3 cut(s) 619, 689, 937
MvnI CGCG 4 cut(s) 216, 252, 330, 1121
MwoI GCNNNNNNNGC 8 cut(s) 50, 260, 263, 309, 498, 527, 562, 662
NaeI GCCGGC 2 cut(s) 523, 544
NarI GGCGCC 2 cut(s) 540, 546
NcoI CCATGG 1 cut(s) 297
NdeII GATC 1 cut(s) 789
NgoMIV GCCGGC 2 cut(s) 521, 542
NlaIII CATG 7 cut(s) 133, 153, 301, 481, 565, 589, 1090
NlaIV GGNNCC 8 cut(s) 277, 303, 304, 379, 541, 547, 898, 1143
NmeAIII GCCGAG 4 cut(s) 354, 966, 1029, 1079
NspI RCATGY 2 cut(s) 133, 481
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 1 cut(s) 593
PdiI GCCGGC 2 cut(s) 523, 544
PdmI GAANNNNTTC 1 cut(s) 27
PkrI GCNGC 7 cut(s) 256, 265, 476, 491, 616, 1117, 1120
PleI GAGTC 1 cut(s) 1119
PluTI GGCGCC 2 cut(s) 543, 549
PpsI GAGTC 1 cut(s) 1119
Psp124BI GAGCTC 1 cut(s) 1076
Psp6I CCWGG 3 cut(s) 617, 687, 935
PspFI CCCAGC 2 cut(s) 525, 552
PspGI CCWGG 3 cut(s) 617, 687, 935
PspN4I GGNNCC 8 cut(s) 277, 303, 304, 379, 541, 547, 898, 1143
PspOMI GGGCCC 1 cut(s) 301
PspPI GGNCC 5 cut(s) 301, 302, 323, 528, 673
PsuI RGATCY 1 cut(s) 789
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 3 cut(s) 669, 718, 857
RsaNI GTAC 3 cut(s) 668, 717, 856
RseI CAYNNNNRTG 3 cut(s) 296, 887, 1091
SacI GAGCTC 1 cut(s) 1076
SacII CCGCGG 1 cut(s) 1122
SaqAI TTAA 1 cut(s) 1059
SatI GCNGC 7 cut(s) 255, 264, 475, 490, 615, 1116, 1119
Sau3AI GATC 1 cut(s) 789
Sau96I GGNCC 5 cut(s) 301, 302, 323, 528, 673
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 1 cut(s) 1119
ScrFI CCNGG 3 cut(s) 619, 689, 937
SduI GDGCHC 4 cut(s) 305, 651, 734, 1076
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 778
SfoI GGCGCC 2 cut(s) 541, 547
Sfr303I CCGCGG 1 cut(s) 1122
SgrAI CRCCGGYG 2 cut(s) 536, 542
SgrBI CCGCGG 1 cut(s) 1122
SinI GGWCC 1 cut(s) 673
SmiMI CAYNNNNRTG 3 cut(s) 296, 887, 1091
Sse9I AATT 1 cut(s) 98
SspDI GGCGCC 2 cut(s) 539, 545
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 1076
StyD4I CCNGG 3 cut(s) 617, 687, 935
StyI CCWWGG 2 cut(s) 297, 319
TaaI ACNGT 2 cut(s) 627, 1024
TaiI ACGT 2 cut(s) 718, 1133
TaqI TCGA 2 cut(s) 734, 750
TasI AATT 1 cut(s) 98
TatI WGTACW 2 cut(s) 667, 855
TauI GCSGC 4 cut(s) 257, 477, 1118, 1121
Tru1I TTAA 1 cut(s) 1059
Tru9I TTAA 1 cut(s) 1059
TscAI CASTG 1 cut(s) 841
TseI GCWGC 3 cut(s) 263, 489, 614
TspDTI ATGAA 4 cut(s) 24, 93, 259, 397
TspRI CASTG 1 cut(s) 841
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 1 cut(s) 98
XceI RCATGY 2 cut(s) 133, 481
XmaJI CCTAGG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.