FvH4_6g52230

membrane protein At3g27390-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
38539651 .. 38543956
4306 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52230.t1

Sequence Viewer

Length: 1767 bp
ATGGAACCTCCATCTGGGTTTTTGGCTACTTTATGGAACTTTATCTGTTTTCTACCTTACTTTATTGGGCTTCTTCTTCTTGGCACAGTTAAAGGAATTGTCTTATGTCCATTGATATGCCTTATCATTGGAATTGGAAACACTGCTATCATATTGGGTCTTTGGCCTGTTCACTTTGTTTGGACGTATTATTGCATCTTGAGCGCTAAACAATTCGGGCCAGTTCTAAAGATGGTTGTCTGCATAAGTATATTACCTCTCCAATTGATCTTGTGGCCAGTGGTTGGAATTGTTGGAAGTGTTTTGGGTGGAGCAGCATATGGCTTACTTTCACCAGTATTTGAAACTTTTCAGGCTGTTGGAGAAGGAAAGACCAATCAATTGTACCACTGCTTTTACGATGGAACTGTGAGCACGGTTAAGGGAAGCTTCACTGTTGTGAGGGATTTTTTGGATGTCTGTTACCATACATACTTCTCAGTTATGGATGACCTGAAAACTCAAGGTCCTCCAGATGCAAAGTATTATGAAATCAGGTTGCTTCATCTTCCTGGGGCTGTTCTAGCTGGGGTCATTGGTTTCATGGTTGATATGCCATTGATCTCATTCATTGCCATGTGTAAAAGCCCATACATGCTCTTCAAGGGGTGGCACCGTTTGTTTCATGACCTTATTGGTCGGGAGGGCCCTTTCTTGGAAACAATTTGTGTTCCATTTGCAGGGCTTGCTATCCTAGTCTGGCCATTGGCTGTTGTTGGGGCAGTTTTGGGATCTATGGTGGCCAGCATATTTTATGGTGCTTTTGCTGGAGTGGTAGTTTATCAGGAGTCCTCGCTTTGGATGGGACTTCGCTATATCGTTGCATCCTTAGCCATATATGATGAATACAGCAATGATATCCTTGACATGCCAGAAGGATCCTGCTTTCCAAGGCTAACCTACCGAAAGAAGACTGAATCGCTCCGAACCACCTCTCGTGCACCTTCTTTCTCAAAGCATAGATCTTTGAAACATGCTCCTTCATTCAATAATCCTATGATTGAGTTGAAGCCCGTTGAGGTAATGGATAGTTTATTCAAGGAGTGCAAAAGATATGGAGAAATCCTGGTTTCTGAAGGAACAATAACAGCTCAAGACCTCGCAGATGCCAAGTCTAGTAAAGGAAGTAGAGTTATTAGCACTGGTTTGCCAGCTTGTTGCCTTCTCCAGACACTCTTGCGATCTGCAAAAGCCAACTCGCCCGGTATATTGTTAATTGACAACTGCACTGAGGTAACTAGCTCAAATAGACCAAAAGACACAATCTTTGATTGGTTTCTCAACCCTCTCTTGATCATCAAGGATCAGATTAAAGCAGAAAATCTTACTGAGTCAGAAGAGTTGTACCTTGGCAAATTAGTTCTATTGAGTGGTGATCCTGTGAGGTTGAAAAACACAAACGTTGGCTCACCACCTGAGTCGGAGCGTAAACAAGCTGAACTTGATGCATTGGCTCGAAGGCTCCAAGGTATTACCAAATCAATCTCAAGGTATCCAACTTACAGGCGTCGGTTTGACGAGCTTGTCAAAGCGTTATCTGATGAACTTGGCCAGAATAATGATGGCAGTAGTAGCAAACCAACCAGTGGACCTAATACAATTTCAAGATCGAAGAGTGCCTTTGCCCGGTTGTTCAGCCAGAAATCATTTAGTTTTACAAACAAAACAAGCAATCACGGGGGTGATCCAGAGTCGCAACTAAAGGAAAGAGATGTGACAATTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

589

Amino Acids

64.92

Weight (kDa)

8.4

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1562
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 2 cut(s) 284, 1625
AclI AACGTT 1 cut(s) 1440
AclWI GGATC 6 cut(s) 778, 912, 925, 1350, 1409, 1718
AcoI YGGCCR 4 cut(s) 275, 740, 780, 1588
AcuI CTGAAG 1 cut(s) 1134
AcyI GRCGYC 1 cut(s) 1546
AfaI GTAC 2 cut(s) 386, 1385
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 7 cut(s) 14, 284, 694, 719, 837, 1625, 1665
AgsI TTSAA 8 cut(s) 344, 643, 1009, 1027, 1048, 1078, 1429, 1644
AjnI CCWGG 2 cut(s) 550, 1104
AleI CACNNNNGTG 2 cut(s) 437, 1719
AluBI AGCT 7 cut(s) 429, 566, 1130, 1193, 1281, 1475, 1561
AluI AGCT 7 cut(s) 429, 566, 1130, 1193, 1281, 1475, 1561
Alw21I GWGCWC 2 cut(s) 416, 982
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 6 cut(s) 778, 912, 925, 1350, 1409, 1718
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 7 cut(s) 164, 218, 275, 685, 740, 780, 1588
ApaI GGGCCC 1 cut(s) 689
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 1 cut(s) 314
ArsI GACNNNNNNTTYG 2 cut(s) 1289, 1321
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 5 cut(s) 218, 506, 685, 686, 1628
AsuC2I CCSGG 2 cut(s) 1242, 1666
AsuHPI GGTGA 4 cut(s) 324, 1424, 1440, 1733
AvaII GGWCC 2 cut(s) 506, 1628
BaeGI GKGCMC 2 cut(s) 689, 982
BalI TGGCCA 4 cut(s) 277, 742, 782, 1590
BamHI GGATCC 1 cut(s) 917
BanI GGYRCC 1 cut(s) 651
BanII GRGCYC 1 cut(s) 689
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 956
Bbv12I GWGCWC 2 cut(s) 416, 982
BbvI GCAGC 1 cut(s) 326
BccI CCATC 5 cut(s) 19, 226, 395, 835, 1595
BciT130I CCWGG 2 cut(s) 552, 1106
BciVI GTATCC 1 cut(s) 1542
BclI TGATCA 1 cut(s) 1332
BcnI CCSGG 2 cut(s) 1242, 1666
BfaI CTAG 4 cut(s) 563, 734, 1155, 1278
BfoI RGCGCY 1 cut(s) 207
BfuI GTATCC 1 cut(s) 1542
BglII AGATCT 1 cut(s) 1001
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 4 cut(s) 552, 1106, 1242, 1666
Bme18I GGWCC 2 cut(s) 506, 1628
BmgT120I GGNCC 5 cut(s) 218, 506, 685, 686, 1628
BmiI GGNNCC 5 cut(s) 6, 653, 687, 919, 1502
BmrFI CCNGG 4 cut(s) 552, 1106, 1242, 1666
BmsI GCATC 5 cut(s) 204, 505, 872, 1135, 1474
BpiI GAAGAC 1 cut(s) 956
BpmI CTGGAG 3 cut(s) 495, 828, 1190
Bpu10I CCTNAGC 1 cut(s) 868
BpuEI CTTGAG 4 cut(s) 220, 486, 1116, 1510
BpuMI CCSGG 2 cut(s) 1242, 1666
BsaHI GRCGYC 1 cut(s) 1546
BsaJI CCNNGG 4 cut(s) 551, 929, 1387, 1504
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 7 cut(s) 14, 284, 694, 719, 837, 1625, 1665
Bse1I ACTGG 5 cut(s) 221, 278, 335, 1186, 1623
Bse3DI GCAATG 2 cut(s) 609, 898
BseBI CCWGG 2 cut(s) 552, 1106
BseDI CCNNGG 4 cut(s) 551, 929, 1387, 1504
BseGI GGATG 4 cut(s) 460, 493, 846, 863
BseLI CCNNNNNNNGG 7 cut(s) 14, 284, 694, 719, 837, 1625, 1665
BseMI GCAATG 2 cut(s) 609, 898
BseMII CTCAG 4 cut(s) 492, 1260, 1359, 1446
BseNI ACTGG 5 cut(s) 221, 278, 335, 1186, 1623
BseSI GKGCMC 2 cut(s) 689, 982
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 1 cut(s) 566
BsgI GTGCAG 1 cut(s) 1249
BshFI GGCC 7 cut(s) 166, 220, 277, 687, 742, 782, 1590
BshNI GGYRCC 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 416, 982
BsiSI CCGG 2 cut(s) 1242, 1666
BslFI GGGAC 1 cut(s) 858
BslI CCNNNNNNNGG 7 cut(s) 14, 284, 694, 719, 837, 1625, 1665
BsmFI GGGAC 1 cut(s) 858
BsnI GGCC 7 cut(s) 166, 220, 277, 687, 742, 782, 1590
Bsp120I GGGCCC 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 416, 689, 982
BspANI GGCC 7 cut(s) 166, 220, 277, 687, 742, 782, 1590
BspCNI CTCAG 4 cut(s) 491, 1261, 1360, 1447
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 5 cut(s) 6, 653, 687, 919, 1502
BspPI GGATC 6 cut(s) 778, 912, 925, 1350, 1409, 1718
BspQI GCTCTTC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 651
BsrDI GCAATG 2 cut(s) 609, 898
BsrI ACTGG 5 cut(s) 221, 278, 335, 1186, 1623
BssECI CCNNGG 4 cut(s) 551, 929, 1387, 1504
BssNI GRCGYC 1 cut(s) 1546
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 3 cut(s) 929, 1387, 1504
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 552, 1106
Bst4CI ACNGT 5 cut(s) 88, 409, 418, 436, 656
Bst6I CTCTTC 3 cut(s) 644, 1371, 1646
BstACI GRCGYC 1 cut(s) 1546
BstAPI GCANNNNNTGC 1 cut(s) 725
BstC8I GCNNGC 3 cut(s) 726, 784, 1191
BstDEI CTNAG 5 cut(s) 478, 868, 1269, 1368, 1455
BstF5I GGATG 4 cut(s) 460, 493, 846, 863
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstMWI GCNNNNNNNGC 5 cut(s) 201, 563, 725, 869, 1611
BstNI CCWGG 2 cut(s) 552, 1106
BstNSI RCATGY 3 cut(s) 637, 910, 1016
BstSCI CCNGG 4 cut(s) 550, 1104, 1240, 1664
BstSLI GKGCMC 2 cut(s) 689, 982
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 956
BstX2I RGATCY 3 cut(s) 770, 917, 1001
BstYI RGATCY 3 cut(s) 770, 917, 1001
BsuI GTATCC 1 cut(s) 1542
BsuRI GGCC 7 cut(s) 166, 220, 277, 687, 742, 782, 1590
BtsCI GGATG 4 cut(s) 460, 493, 846, 863
BtsI GCAGTG 2 cut(s) 141, 388
BtsIMutI CAGTG 7 cut(s) 141, 285, 388, 432, 1179, 1266, 1630
Cac8I GCNNGC 3 cut(s) 726, 784, 1191
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 5 cut(s) 218, 506, 685, 686, 1628
CseI GACGC 1 cut(s) 1535
Csp6I GTAC 2 cut(s) 385, 1384
CviAII CATG 6 cut(s) 583, 616, 634, 665, 907, 1013
CviQI GTAC 2 cut(s) 385, 1384
DdeI CTNAG 5 cut(s) 478, 868, 1269, 1368, 1455
DrdI GACNNNNNNGTC 1 cut(s) 1562
DseDI GACNNNNNNGTC 1 cut(s) 1562
EaeI YGGCCR 4 cut(s) 275, 740, 780, 1588
Eam1104I CTCTTC 3 cut(s) 644, 1371, 1646
EarI CTCTTC 3 cut(s) 644, 1371, 1646
Eco130I CCWWGG 3 cut(s) 929, 1387, 1504
Eco24I GRGCYC 1 cut(s) 689
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 2 cut(s) 506, 1628
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 1134
EcoO109I RGGNCCY 3 cut(s) 506, 685, 686
EcoRII CCWGG 2 cut(s) 550, 1104
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 3 cut(s) 929, 1387, 1504
EcoT22I ATGCAT 1 cut(s) 1489
EcoT38I GRGCYC 1 cut(s) 689
ErhI CCWWGG 3 cut(s) 929, 1387, 1504
FaeI CATG 6 cut(s) 586, 619, 637, 668, 910, 1016
FalI AAGNNNNNCTT 6 cut(s) 413, 445, 1464, 1496, 1643, 1675
FaqI GGGAC 1 cut(s) 858
FatI CATG 6 cut(s) 582, 615, 633, 664, 906, 1012
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 1332
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 4 cut(s) 467, 500, 850, 853
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 4 cut(s) 563, 734, 1155, 1278
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 3 cut(s) 495, 828, 1190
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 7 cut(s) 166, 220, 277, 687, 742, 782, 1590
HapII CCGG 2 cut(s) 1242, 1666
HgaI GACGC 1 cut(s) 1535
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 1546
Hin1II CATG 6 cut(s) 586, 619, 637, 668, 910, 1016
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 427
HinfI GANTC 5 cut(s) 827, 956, 1370, 1457, 1730
HpaII CCGG 2 cut(s) 1242, 1666
HphI GGTGA 4 cut(s) 324, 1424, 1440, 1733
Hpy166II GTNNAC 4 cut(s) 172, 980, 1469, 1628
Hpy188I TCNGA 6 cut(s) 965, 1114, 1347, 1375, 1462, 1579
Hpy8I GTNNAC 4 cut(s) 172, 980, 1469, 1628
Hpy99I CGWCG 1 cut(s) 1551
HpyAV CCTTC 7 cut(s) 359, 908, 993, 1029, 1109, 1211, 1491
HpyCH4III ACNGT 5 cut(s) 88, 409, 418, 436, 656
HpyCH4IV ACGT 2 cut(s) 185, 1440
HpyF10VI GCNNNNNNNGC 5 cut(s) 201, 563, 725, 869, 1611
HpyF3I CTNAG 5 cut(s) 478, 868, 1269, 1368, 1455
HpySE526I ACGT 2 cut(s) 185, 1440
Hsp92I GRCGYC 1 cut(s) 1546
Hsp92II CATG 6 cut(s) 586, 619, 637, 668, 910, 1016
HspAI GCGC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 1332
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 5 cut(s) 311, 966, 1021, 1462, 1506
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 5 cut(s) 204, 505, 872, 1135, 1474
MaeI CTAG 4 cut(s) 563, 734, 1155, 1278
MaeII ACGT 2 cut(s) 185, 1440
MaeIII GTNAC 3 cut(s) 461, 1273, 1753
MboII GAAGA 7 cut(s) 65, 68, 539, 631, 961, 1388, 1663
MfeI CAATTG 3 cut(s) 263, 380, 1758
MflI RGATCY 3 cut(s) 770, 917, 1001
MhlI GDGCHC 3 cut(s) 416, 689, 982
MlsI TGGCCA 4 cut(s) 277, 742, 782, 1590
MluNI TGGCCA 4 cut(s) 277, 742, 782, 1590
MlyI GAGTC 4 cut(s) 836, 1379, 1466, 1739
MmeI TCCRAC 5 cut(s) 265, 274, 340, 1440, 1559
Mox20I TGGCCA 4 cut(s) 277, 742, 782, 1590
Mph1103I ATGCAT 1 cut(s) 1489
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 4 cut(s) 277, 742, 782, 1590
MseI TTAA 4 cut(s) 90, 420, 1253, 1350
MslI CAYNNNNRTG 4 cut(s) 115, 437, 614, 1719
Msp20I TGGCCA 4 cut(s) 277, 742, 782, 1590
MspI CCGG 2 cut(s) 1242, 1666
MspR9I CCNGG 4 cut(s) 552, 1106, 1242, 1666
MunI CAATTG 3 cut(s) 263, 380, 1758
MvaI CCWGG 2 cut(s) 552, 1106
MwoI GCNNNNNNNGC 5 cut(s) 201, 563, 725, 869, 1611
NciI CCSGG 2 cut(s) 1242, 1666
NdeI CATATG 1 cut(s) 319
NlaIII CATG 6 cut(s) 586, 619, 637, 668, 910, 1016
NlaIV GGNNCC 5 cut(s) 6, 653, 687, 919, 1502
NmuCI GTSAC 1 cut(s) 1753
NsiI ATGCAT 1 cut(s) 1489
NspI RCATGY 3 cut(s) 637, 910, 1016
OliI CACNNNNGTG 2 cut(s) 437, 1719
PagI TCATGA 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 956
PflMI CCANNNNNTGG 2 cut(s) 284, 1625
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 4 cut(s) 835, 1378, 1465, 1738
PpsI GAGTC 4 cut(s) 835, 1378, 1465, 1738
PpuMI RGGWCCY 1 cut(s) 506
Psp1406I AACGTT 1 cut(s) 1440
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 2 cut(s) 550, 1104
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 2 cut(s) 550, 1104
PspN4I GGNNCC 5 cut(s) 6, 653, 687, 919, 1502
PspOMI GGGCCC 1 cut(s) 685
PspPI GGNCC 5 cut(s) 218, 506, 685, 686, 1628
PspPPI RGGWCCY 1 cut(s) 506
PsuI RGATCY 3 cut(s) 770, 917, 1001
RsaI GTAC 2 cut(s) 386, 1385
RsaNI GTAC 2 cut(s) 385, 1384
RseI CAYNNNNRTG 4 cut(s) 115, 437, 614, 1719
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 4 cut(s) 90, 420, 1253, 1350
SatI GCNGC 1 cut(s) 315
Sau96I GGNCC 5 cut(s) 218, 506, 685, 686, 1628
SchI GAGTC 4 cut(s) 836, 1379, 1466, 1739
ScrFI CCNGG 4 cut(s) 552, 1106, 1242, 1666
SduI GDGCHC 3 cut(s) 416, 689, 982
SfaNI GCATC 5 cut(s) 204, 505, 872, 1135, 1474
SinI GGWCC 2 cut(s) 506, 1628
SmiMI CAYNNNNRTG 4 cut(s) 115, 437, 614, 1719
SmlI CTYRAG 4 cut(s) 199, 501, 1131, 1525
SmoI CTYRAG 4 cut(s) 199, 501, 1131, 1525
SspMI CTAG 4 cut(s) 563, 734, 1155, 1278
StyD4I CCNGG 4 cut(s) 550, 1104, 1240, 1664
StyI CCWWGG 3 cut(s) 929, 1387, 1504
TaaI ACNGT 5 cut(s) 88, 409, 418, 436, 656
TaiI ACGT 2 cut(s) 188, 1443
TaqI TCGA 2 cut(s) 1495, 1649
TfiI GAWTC 1 cut(s) 956
Tru1I TTAA 4 cut(s) 90, 420, 1253, 1350
Tru9I TTAA 4 cut(s) 90, 420, 1253, 1350
TscAI CASTG 7 cut(s) 148, 285, 395, 439, 1186, 1273, 1630
TseFI GTSAC 1 cut(s) 1753
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 1753
TspDTI ATGAA 8 cut(s) 533, 543, 571, 598, 653, 897, 1011, 1596
TspRI CASTG 7 cut(s) 148, 285, 395, 439, 1186, 1273, 1630
Van91I CCANNNNNTGG 2 cut(s) 284, 1625
VneI GTGCAC 1 cut(s) 978
VpaK11BI GGWCC 2 cut(s) 506, 1628
XceI RCATGY 3 cut(s) 637, 910, 1016
XcmI CCANNNNNNNNNTGG 1 cut(s) 1598
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 4 cut(s) 563, 734, 1155, 1278
Zsp2I ATGCAT 1 cut(s) 1489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.