pycom111g01610

membrane protein At3g27390-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
991880 .. 995269
3390 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01610.3

Sequence Viewer

Length: 1473 bp
ATGGAACCTCCAAAGGGGGTTTGGGCTTCTTTGTGGAACTTCATCTGCTTTCTTCCTTACTTCATAGGGCTTCTGATTCTTGGCAACATTAAAGGTATCGTTTTCTGCCCGTTGATATGCCTTATCATGACAGTCGGAAACACCTGTATCATACTGGGTCTTTGGCCAATACACTTTGTGTGGACCTATTATTGCGTTTTGAGGTCTAAGAGATTAGGGCCAGTTCTGAAGATTGTTAACTGCTTATGTGTACTACCTATCGTCTTGATCTTGTGGCCAGTGGTTGGGATTGTTGGTAGTATTTTGGGTGGAGCGGCATTTGGCTTTTTTTCACCGATGATGGGAACTTTTGAAGCTGTTGGAGAAGGGAAGACCGATAAACTGTACCACTGCTTTTATGATGGAACTTGGAGCACTGTCAAAAGGTGCTTAACTATTGTGAGGGATACCAGGGATTTTTTTTACTACACTTACTTCTCACTTATGGATGACCTGCAACAAGAAGGTCCCCCGGGCGCAAAATATTATGAGATTAGGGTGCTGTATCTTCCTGGGGCTGTAATATTAGCAGTCCTTGGTTTCTTGGTTGATATGCCAGTGATCTCATTTATTGCCATATGCAAATGCCCATACATGCTCTTCAAGGGGTGGCACCGTTTGTTTCATGACCTTATAGGTCGAGAAGGCCCTTTCTTGGAAACAATATGTGTTCCATTTGCGGGTCTTGCTATCCTAGTCTGGCCATTGGCTGTTGTTGGGGGAGTGTTGGCGTCAATGGTGGCTGGTATCTTTCTTGGTGCTTTCGCTGGAGTGATTGTTTATCAGGAATCCTCATTTTGGTTGGGGCTTTGCTATATCGTTGCATCCTTGGCCATATATGATGAATACAGCAATGACATCCTTGACATGCCAGAAGGATCCTGCTTTCCAAGACCAAAGTACCGAAAGAAGGCTGAATTGCCCCAGACCAACTCTCGCGCACCCTCTTTCTCAAGGCCTGGCTCCTTTCGGGGTGCTCCCTCCCGCTTACCTTCATTCACTACTCCTATCATTGAATTGAAGCCCCTTGAGCTGATTGATAGTTTATTTAAGGAGTGTAAACATCACGGGGAAAAAATGGTTGCTGACGGAACTATTATGCTTCAAGACCTTGAAGACTCCAAGTCCAGTCAAGGTAGCAGAGTCATTAGCATTGGCTTACCAGCATATTGCCTTCTTCAGACACTCCTGCGATCCGCAAAAGCCAATTCATCAGGAATATTGTTAAGTGACAATGCTACTGAGATAACTACCACAAACAGACCGAAAGAAACTTTTTTTGATTGGTTTTTCAATCCGCTGTTGATCATCAAGGACCAGATAAGAGCAGAAAACCTTTCTGAAGCAGAAGAGGCCTACCTTTGCAAATTAGTTCTGCTGACTGGGGATCGATCCTTTGAGGTTGAAACAATCGAATATTGGCTCACCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

491

Amino Acids

54.82

Weight (kDa)

6.13

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 314
AccII CGCG 1 cut(s) 978
AciI CCGC 5 cut(s) 314, 719, 1024, 1236, 1337
AclWI GGATC 5 cut(s) 912, 925, 1227, 1425, 1434
AcoI YGGCCR 4 cut(s) 164, 275, 740, 870
AcuI CTGAAG 3 cut(s) 248, 1202, 1401
AcyI GRCGYC 1 cut(s) 770
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 3 cut(s) 252, 386, 941
AfiI CCNNNNNNNGG 7 cut(s) 14, 284, 341, 694, 719, 837, 949
AgsI TTSAA 8 cut(s) 353, 643, 1055, 1060, 1145, 1154, 1333, 1445
AhdI GACNNNNNGTC 1 cut(s) 1162
AjnI CCWGG 3 cut(s) 449, 550, 997
AluBI AGCT 2 cut(s) 356, 1072
AluI AGCT 2 cut(s) 356, 1072
Alw21I GWGCWC 2 cut(s) 416, 1018
AlwI GGATC 5 cut(s) 912, 925, 1227, 1425, 1434
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 8 cut(s) 164, 218, 275, 685, 740, 870, 995, 1392
AspLEI GCGC 2 cut(s) 518, 980
AspS9I GGNCC 5 cut(s) 183, 218, 506, 686, 1354
AsuC2I CCSGG 2 cut(s) 512, 513
AsuHPI GGTGA 2 cut(s) 324, 1456
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 3 cut(s) 183, 506, 1354
BaeI ACNNNNGTAYC 4 cut(s) 130, 163, 923, 956
BalI TGGCCA 4 cut(s) 166, 277, 742, 872
BamHI GGATCC 1 cut(s) 917
BanI GGYRCC 1 cut(s) 651
BbsI GAAGAC 2 cut(s) 377, 1161
Bbv12I GWGCWC 2 cut(s) 416, 1018
BccI CCATC 2 cut(s) 334, 395
BciT130I CCWGG 3 cut(s) 451, 552, 999
BciVI GTATCC 1 cut(s) 439
BclI TGATCA 1 cut(s) 1344
BcnI CCSGG 2 cut(s) 512, 513
BfaI CTAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 501
BfuI GTATCC 1 cut(s) 439
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 5 cut(s) 451, 512, 513, 552, 999
Bme18I GGWCC 3 cut(s) 183, 506, 1354
BmeRI GACNNNNNGTC 1 cut(s) 1162
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 5 cut(s) 183, 218, 506, 686, 1354
BmiI GGNNCC 5 cut(s) 6, 508, 653, 919, 1003
BmrFI CCNGG 5 cut(s) 451, 512, 513, 552, 999
BmrI ACTGGG 2 cut(s) 164, 1431
BmsI GCATC 1 cut(s) 872
BmuI ACTGGG 2 cut(s) 164, 1431
BpiI GAAGAC 2 cut(s) 377, 1161
BpmI CTGGAG 1 cut(s) 828
BpuEI CTTGAG 2 cut(s) 976, 1088
BpuMI CCSGG 2 cut(s) 512, 513
Bsa29I ATCGAT 1 cut(s) 1429
BsaHI GRCGYC 1 cut(s) 770
BsaJI CCNNGG 6 cut(s) 450, 510, 511, 551, 574, 867
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 7 cut(s) 14, 284, 341, 694, 719, 837, 949
Bse1I ACTGG 6 cut(s) 159, 221, 278, 596, 1167, 1426
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 3 cut(s) 451, 552, 999
BseCI ATCGAT 1 cut(s) 1429
BseDI CCNNGG 6 cut(s) 450, 510, 511, 551, 574, 867
BseGI GGATG 3 cut(s) 493, 863, 897
BseLI CCNNNNNNNGG 7 cut(s) 14, 284, 341, 694, 719, 837, 949
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 1 cut(s) 1272
BseNI ACTGG 6 cut(s) 159, 221, 278, 596, 1167, 1426
Bsh1236I CGCG 1 cut(s) 978
BshFI GGCC 8 cut(s) 166, 220, 277, 687, 742, 872, 997, 1394
BshNI GGYRCC 1 cut(s) 651
BshVI ATCGAT 1 cut(s) 1429
BsiHKAI GWGCWC 2 cut(s) 416, 1018
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 7 cut(s) 14, 284, 341, 694, 719, 837, 949
BsmFI GGGAC 1 cut(s) 492
BsnI GGCC 8 cut(s) 166, 220, 277, 687, 742, 872, 997, 1394
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 416, 1018
Bsp143I GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
BspACI CCGC 5 cut(s) 314, 719, 1024, 1236, 1337
BspANI GGCC 8 cut(s) 166, 220, 277, 687, 742, 872, 997, 1394
BspCNI CTCAG 1 cut(s) 1273
BspDI ATCGAT 1 cut(s) 1429
BspFNI CGCG 1 cut(s) 978
BspHI TCATGA 2 cut(s) 126, 664
BspLI GGNNCC 5 cut(s) 6, 508, 653, 919, 1003
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 5 cut(s) 912, 925, 1227, 1425, 1434
BspQI GCTCTTC 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 651
BsrBI CCGCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 898
BsrI ACTGG 6 cut(s) 159, 221, 278, 596, 1167, 1426
BssECI CCNNGG 6 cut(s) 450, 510, 511, 551, 574, 867
BssMI GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
BssNI GRCGYC 1 cut(s) 770
BssT1I CCWWGG 2 cut(s) 574, 867
Bst2UI CCWGG 3 cut(s) 451, 552, 999
Bst4CI ACNGT 4 cut(s) 133, 384, 418, 656
Bst6I CTCTTC 2 cut(s) 644, 1383
BstACI GRCGYC 1 cut(s) 770
BstDEI CTNAG 2 cut(s) 207, 1281
BstF5I GGATG 3 cut(s) 493, 863, 897
BstFNI CGCG 1 cut(s) 978
BstHHI GCGC 2 cut(s) 518, 980
BstKTI GATC 7 cut(s) 270, 603, 920, 1235, 1347, 1429, 1433
BstMBI GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
BstMWI GCNNNNNNNGC 4 cut(s) 725, 869, 1069, 1391
BstNI CCWGG 3 cut(s) 451, 552, 999
BstNSI RCATGY 2 cut(s) 637, 910
BstSCI CCNGG 5 cut(s) 449, 510, 511, 550, 997
BstUI CGCG 1 cut(s) 978
BstV2I GAAGAC 2 cut(s) 377, 1161
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
Bsu15I ATCGAT 1 cut(s) 1429
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 8 cut(s) 166, 220, 277, 687, 742, 872, 997, 1394
BsuTUI ATCGAT 1 cut(s) 1429
BtsCI GGATG 3 cut(s) 493, 863, 897
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 4 cut(s) 285, 388, 414, 603
BveI ACCTGC 1 cut(s) 501
CciI TCATGA 2 cut(s) 126, 664
CfoI GCGC 2 cut(s) 518, 980
Cfr13I GGNCC 5 cut(s) 183, 218, 506, 686, 1354
Cfr9I CCCGGG 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 1429
CseI GACGC 1 cut(s) 759
Csp6I GTAC 3 cut(s) 251, 385, 940
CviAII CATG 4 cut(s) 127, 634, 665, 907
CviQI GTAC 3 cut(s) 251, 385, 940
DdeI CTNAG 2 cut(s) 207, 1281
DpnI GATC 7 cut(s) 269, 602, 919, 1234, 1346, 1428, 1432
DpnII GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
DraIII CACNNNGTG 1 cut(s) 178
DriI GACNNNNNGTC 1 cut(s) 1162
EaeI YGGCCR 4 cut(s) 164, 275, 740, 870
Eam1104I CTCTTC 2 cut(s) 644, 1383
Eam1105I GACNNNNNGTC 1 cut(s) 1162
EarI CTCTTC 2 cut(s) 644, 1383
Eco130I CCWWGG 2 cut(s) 574, 867
Eco147I AGGCCT 2 cut(s) 997, 1394
Eco47I GGWCC 3 cut(s) 183, 506, 1354
Eco57I CTGAAG 3 cut(s) 248, 1202, 1401
Eco88I CYCGRG 1 cut(s) 511
EcoO109I RGGNCCY 2 cut(s) 506, 686
EcoRII CCWGG 3 cut(s) 449, 550, 997
EcoT14I CCWWGG 2 cut(s) 574, 867
ErhI CCWWGG 2 cut(s) 574, 867
FaeI CATG 4 cut(s) 130, 637, 668, 910
FaqI GGGAC 1 cut(s) 492
FatI CATG 4 cut(s) 126, 633, 664, 906
FauI CCCGC 2 cut(s) 712, 1031
FauNDI CATATG 1 cut(s) 617
FbaI TGATCA 1 cut(s) 1344
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 3 cut(s) 500, 850, 884
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 734
GlaI GCGC 2 cut(s) 517, 979
GluI GCNGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 8 cut(s) 166, 220, 277, 687, 742, 872, 997, 1394
HapII CCGG 1 cut(s) 512
HgaI GACGC 1 cut(s) 759
HhaI GCGC 2 cut(s) 518, 980
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 4 cut(s) 130, 637, 668, 910
Hin6I GCGC 2 cut(s) 516, 978
HinP1I GCGC 2 cut(s) 516, 978
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 4 cut(s) 76, 827, 1157, 1182
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 324, 1456
Hpy166II GTNNAC 4 cut(s) 183, 238, 251, 1100
Hpy188I TCNGA 5 cut(s) 75, 137, 228, 1221, 1381
Hpy188III TCNNGA 7 cut(s) 127, 265, 665, 680, 824, 1145, 1254
Hpy8I GTNNAC 4 cut(s) 183, 238, 251, 1100
HpyAV CCTTC 7 cut(s) 359, 497, 677, 908, 943, 1041, 1223
HpyCH4III ACNGT 4 cut(s) 133, 384, 418, 656
HpyCH4V TGCA 4 cut(s) 496, 621, 863, 1404
HpyF10VI GCNNNNNNNGC 4 cut(s) 725, 869, 1069, 1391
HpyF3I CTNAG 2 cut(s) 207, 1281
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 4 cut(s) 130, 637, 668, 910
HspAI GCGC 2 cut(s) 516, 978
Ksp22I TGATCA 1 cut(s) 1344
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 4 cut(s) 311, 411, 1007, 1021
LweI GCATC 1 cut(s) 872
MaeI CTAG 1 cut(s) 734
MaeIII GTNAC 1 cut(s) 1268
MalI GATC 7 cut(s) 269, 602, 919, 1234, 1346, 1428, 1432
MbiI CCGCTC 1 cut(s) 314
MboI GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
MboII GAAGA 8 cut(s) 44, 241, 382, 539, 631, 1166, 1208, 1400
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 2 cut(s) 416, 1018
MlsI TGGCCA 4 cut(s) 166, 277, 742, 872
MluCI AATT 4 cut(s) 956, 1055, 1246, 1406
MluNI TGGCCA 4 cut(s) 166, 277, 742, 872
MlyI GAGTC 2 cut(s) 1151, 1191
MmeI TCCRAC 2 cut(s) 115, 340
MnlI CCTC 8 cut(s) 18, 195, 435, 841, 994, 1030, 1384, 1432
Mox20I TGGCCA 4 cut(s) 166, 277, 742, 872
MscI TGGCCA 4 cut(s) 166, 277, 742, 872
MseI TTAA 5 cut(s) 90, 237, 431, 1089, 1265
Msp20I TGGCCA 4 cut(s) 166, 277, 742, 872
MspA1I CMGCKG 1 cut(s) 1339
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 5 cut(s) 451, 512, 513, 552, 999
MvaI CCWGG 3 cut(s) 451, 552, 999
MvnI CGCG 1 cut(s) 978
MwoI GCNNNNNNNGC 4 cut(s) 725, 869, 1069, 1391
NciI CCSGG 2 cut(s) 512, 513
NdeI CATATG 1 cut(s) 617
NdeII GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
NlaIII CATG 4 cut(s) 130, 637, 668, 910
NlaIV GGNNCC 5 cut(s) 6, 508, 653, 919, 1003
NmuCI GTSAC 1 cut(s) 1268
NspI RCATGY 2 cut(s) 637, 910
PagI TCATGA 2 cut(s) 126, 664
PceI AGGCCT 2 cut(s) 997, 1394
PciSI GCTCTTC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 76, 827
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 2 cut(s) 1151, 1190
PpsI GAGTC 2 cut(s) 1151, 1190
PpuMI RGGWCCY 1 cut(s) 506
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 3 cut(s) 449, 550, 997
PspGI CCWGG 3 cut(s) 449, 550, 997
PspN4I GGNNCC 5 cut(s) 6, 508, 653, 919, 1003
PspPI GGNCC 5 cut(s) 183, 218, 506, 686, 1354
PspPPI RGGWCCY 1 cut(s) 506
PsuI RGATCY 1 cut(s) 917
RsaI GTAC 3 cut(s) 252, 386, 941
RsaNI GTAC 3 cut(s) 251, 385, 940
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 5 cut(s) 90, 237, 431, 1089, 1265
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 7 cut(s) 267, 600, 917, 1232, 1344, 1426, 1430
Sau96I GGNCC 5 cut(s) 183, 218, 506, 686, 1354
SchI GAGTC 2 cut(s) 1151, 1191
ScrFI CCNGG 5 cut(s) 451, 512, 513, 552, 999
SduI GDGCHC 2 cut(s) 416, 1018
SfaNI GCATC 1 cut(s) 872
SinI GGWCC 3 cut(s) 183, 506, 1354
SmaI CCCGGG 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 991, 1067
SmoI CTYRAG 2 cut(s) 991, 1067
Sse9I AATT 4 cut(s) 956, 1055, 1246, 1406
SseBI AGGCCT 2 cut(s) 997, 1394
SsiI CCGC 5 cut(s) 314, 719, 1024, 1236, 1337
SspI AATATT 4 cut(s) 524, 564, 1260, 1457
SspMI CTAG 1 cut(s) 734
StuI AGGCCT 2 cut(s) 997, 1394
StyD4I CCNGG 5 cut(s) 449, 510, 511, 550, 997
StyI CCWWGG 2 cut(s) 574, 867
TaaI ACNGT 4 cut(s) 133, 384, 418, 656
TaqI TCGA 3 cut(s) 679, 1429, 1452
TaqII GACCGA 2 cut(s) 389, 1318
TasI AATT 4 cut(s) 956, 1055, 1246, 1406
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 76, 827
Tru1I TTAA 5 cut(s) 90, 237, 431, 1089, 1265
Tru9I TTAA 5 cut(s) 90, 237, 431, 1089, 1265
TscAI CASTG 4 cut(s) 285, 395, 421, 603
TseFI GTSAC 1 cut(s) 1268
Tsp45I GTSAC 1 cut(s) 1268
TspDTI ATGAA 6 cut(s) 31, 52, 653, 897, 1023, 1239
TspGWI ACGGA 1 cut(s) 1143
TspMI CCCGGG 1 cut(s) 511
TspRI CASTG 4 cut(s) 285, 395, 421, 603
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 183, 506, 1354
XceI RCATGY 2 cut(s) 637, 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmaI CCCGGG 1 cut(s) 511
XspI CTAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.