Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383453.1

Orthogroup ID

OG0005016

Physical Location & Seq

Genomic Coordinates Reverse (-)

239 .. 1167

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggatagcttatttagggagtgcaaacgatatggggaaatcctgttttctgaaggaacaataactcgtcaagacctcgaagatgccaagtctagtaaaggaagtagagttattagcactggcttgccagcttgttcccttcttcagacactcttgcgatctgcaaaagccaattcggcgggcatattgttaattgacaactgtactgagataactagctcaaacagaccaaaagacacaatctttgattggtttctcaaccccctcttgatcatcaaggatcagatcaaagcagaaaagcttactgagtcagaagagtactacctcggcaaattagtgctattgagtggtgatcctgtgaggttgaaaaactcaaacatcggctcaccacctgattcagagcgtaaacaagctgaacttgatgcattggctcgaaggctccaaggtattactaaatcaatctcaagatacccaacttataggcgccggtttgaggagcttgtcaaagccttatctgatgaacttggccagaataatgaaggtagtatcaaaccaaccagcggccccaataccattgcaagatcaaagagtgcctttgcccggttgttcacccagaaatcttttagttttacaagcaaaacaagcaatcacgggggtgatccagagtcacaagaagtcgaaagagatgtgaccattgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.91

Weight (kDa)

8.69

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27390 AT3G27390 AT5G40640
fragaria_vesca	FvH4_6g52230 FvH4_6g52230 FvH4_6g52230 FvH4_6g52230 FvH4_6g52230
malus_domestica	MD09G1019400.v1.1 MD17G1020000.v1.1
prunus_persica	Prupe.3G297000_v2.0.a1 Prupe.3G297000_v2.0.a1 Prupe.3G297000_v2.0.a1 Prupe.3G297600_v2.0.a1
pyrus_communis	pycom111g01610 pycom17g01660
rosa_chinensis	RchiOBHm_Chr2g0173781
rosa_laevigata	RLG00000022221
rosa_multiflora	Rmu_co8383453.1_g000001 Rmu_sc0003188.1_g000007 Rmu_sc0034272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078630
rosa_rugosa	Rorug02G0572700 Rorug02G0572700 Rorug02G0572700
rosa_samantha	Rh2AG651700 Rh2BG662400 Rh2CG627100 Rh2DG677500
rosa_wichuraiana	Rw2G053500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	483
AciI	CCGC	2 cut(s)	179, 561
AclWI	GGATC	3 cut(s)	288, 347, 653
AcoI	YGGCCR	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	72, 128
AcyI	GRCGYC	1 cut(s)	484
AfaI	GTAC	2 cut(s)	205, 320
AfiI	CCNNNNNNNGG	3 cut(s)	493, 560, 600
AgsI	TTSAA	1 cut(s)	367
AleI	CACNNNNGTG	1 cut(s)	654
AluBI	AGCT	6 cut(s)	9, 131, 219, 301, 413, 499
AluI	AGCT	6 cut(s)	9, 131, 219, 301, 413, 499
AlwI	GGATC	3 cut(s)	288, 347, 653
AoxI	GGCC	2 cut(s)	526, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	563
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	4 cut(s)	362, 378, 601, 668
BalI	TGGCCA	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	601
BfaI	CTAG	2 cut(s)	93, 216
BfoI	RGCGCY	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	3 cut(s)	440, 485, 565
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	73, 412
BpuEI	CTTGAG	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	601
BsaHI	GRCGYC	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	325, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 560, 600
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	2 cut(s)	573, 693
BseDI	CCNNGG	2 cut(s)	325, 442
BseLI	CCNNNNNNNGG	3 cut(s)	493, 560, 600
BseMI	GCAATG	2 cut(s)	573, 693
BseMII	CTCAG	2 cut(s)	198, 297
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	528, 564
BshNI	GGYRCC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	487, 601
BslI	CCNNNNNNNGG	3 cut(s)	493, 560, 600
BsnI	GGCC	2 cut(s)	528, 564
Bsp143I	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
BspACI	CCGC	2 cut(s)	179, 561
BspANI	GGCC	2 cut(s)	528, 564
BspCNI	CTCAG	2 cut(s)	199, 298
BspLI	GGNNCC	3 cut(s)	440, 485, 565
BspPI	GGATC	3 cut(s)	288, 347, 653
BspT107I	GGYRCC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	573, 693
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	325, 442
BssMI	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	125, 129, 181
BstDEI	CTNAG	2 cut(s)	207, 306
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	7 cut(s)	161, 273, 283, 288, 355, 584, 661
BstMBI	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 642
BstSCI	CCNGG	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	528, 564
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	125, 129, 181
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	204, 319
CviQI	GTAC	2 cut(s)	204, 319
DdeI	CTNAG	2 cut(s)	207, 306
DinI	GGCGCC	1 cut(s)	485
DpnI	GATC	7 cut(s)	160, 272, 282, 287, 354, 583, 660
DpnII	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	442
Eco57I	CTGAAG	2 cut(s)	72, 128
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	485
EheI	GGCGCC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	442
FaiI	YATR	4 cut(s)	33, 185, 480, 700
FalI	AAGNNNNNCTT	4 cut(s)	402, 434, 578, 610
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	2 cut(s)	93, 216
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	528, 564
HapII	CCGG	2 cut(s)	487, 601
HhaI	GCGC	1 cut(s)	486
Hin1I	GRCGYC	1 cut(s)	484
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	308, 395, 665
HpaII	CCGG	2 cut(s)	487, 601
HphI	GGTGA	4 cut(s)	362, 378, 601, 668
Hpy166II	GTNNAC	2 cut(s)	407, 609
Hpy188I	TCNGA	6 cut(s)	52, 147, 285, 313, 400, 517
Hpy188III	TCNNGA	4 cut(s)	71, 268, 465, 662
Hpy8I	GTNNAC	2 cut(s)	407, 609
HpyAV	CCTTC	4 cut(s)	47, 149, 429, 533
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	24, 164, 425, 578, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 642
HpyF3I	CTNAG	2 cut(s)	207, 306
Hsp92I	GRCGYC	1 cut(s)	484
HspAI	GCGC	1 cut(s)	484
KasI	GGCGCC	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
LmnI	GCTCC	2 cut(s)	444, 496
LweI	GCATC	2 cut(s)	73, 412
MaeI	CTAG	2 cut(s)	93, 216
MaeIII	GTNAC	2 cut(s)	666, 688
MalI	GATC	7 cut(s)	160, 272, 282, 287, 354, 583, 660
MboI	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
MboII	GAAGA	3 cut(s)	92, 134, 326
MlsI	TGGCCA	1 cut(s)	528
MluCI	AATT	3 cut(s)	172, 192, 332
MluNI	TGGCCA	1 cut(s)	528
Mly113I	GGCGCC	1 cut(s)	484
MlyI	GAGTC	2 cut(s)	317, 674
MnlI	CCTC	5 cut(s)	86, 275, 335, 354, 487
Mox20I	TGGCCA	1 cut(s)	528
Mph1103I	ATGCAT	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	528
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	561
MspI	CCGG	2 cut(s)	487, 601
MspR9I	CCNGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	2 cut(s)	176, 642
NarI	GGCGCC	1 cut(s)	484
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
NlaIV	GGNNCC	3 cut(s)	440, 485, 565
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	2 cut(s)	666, 688
NsiI	ATGCAT	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	563
PleI	GAGTC	2 cut(s)	316, 673
PluTI	GGCGCC	1 cut(s)	487
PpsI	GAGTC	2 cut(s)	316, 673
PspN4I	GGNNCC	3 cut(s)	440, 485, 565
PspPI	GGNCC	1 cut(s)	563
RsaI	GTAC	2 cut(s)	205, 320
RsaNI	GTAC	2 cut(s)	204, 319
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	7 cut(s)	158, 270, 280, 285, 352, 581, 658
Sau96I	GGNCC	1 cut(s)	563
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	317, 674
ScrFI	CCNGG	1 cut(s)	601
SfaNI	GCATC	2 cut(s)	73, 412
SfoI	GGCGCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	3 cut(s)	172, 192, 332
SsiI	CCGC	2 cut(s)	179, 561
SspDI	GGCGCC	1 cut(s)	483
SspMI	CTAG	2 cut(s)	93, 216
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	3 cut(s)	78, 433, 678
TasI	AATT	3 cut(s)	172, 192, 332
TatI	WGTACW	2 cut(s)	203, 318
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	666, 688
Tsp45I	GTSAC	2 cut(s)	666, 688
TspDTI	ATGAA	2 cut(s)	534, 552
TspRI	CASTG	1 cut(s)	124
XspI	CTAG	2 cut(s)	93, 216
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.