Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034272.1

Orthogroup ID

OG0005016

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 1149

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgattgagttgaagccccttgaggtaatggatagcttatttagggagtgcaaacgatatggggaaatcctgttttctgaaggaacaataactcgtcaagacctcgaagatgccaagtctagtaaaggaagtagagttattagcactggcttgccagcttgttcccttcttcagacactcttgcgatctgcaaaagccaattcggcgggcatattgttaattgacaactgtactgagataactagctcaaacagaccaaaagacacaatctttgattggtttctcaaccccctcttgatcatcaaggatcagatcaaagcagaaaagcttactgagtcagaagagtactacctcggcaaattagtgctattgagtggtgatcctgtgaggttgaaaaactcaaacatcggctcaccacctgattcagagcgtaaacaagctgaacttgatgcattggctcgaaggctccaaggtattactaaatcaatctcaagatacccaacttataggcgccggtttgaggagcttgtcaaagccttatctgatgaacttggccagaataatgaaggtagtatcaaaccaaccagcggccccaataccattgcaagatcaaagagtgcctttgcccggttgttcacccagaaatcttttagttttacaagcaaaacaagcaatcacgggggtgatccagagtcacaagaagtcgaaagagatgtgaccattgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.96

Weight (kDa)

8.35

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27390 AT3G27390 AT5G40640
fragaria_vesca	FvH4_6g52230 FvH4_6g52230 FvH4_6g52230 FvH4_6g52230 FvH4_6g52230
malus_domestica	MD09G1019400.v1.1 MD17G1020000.v1.1
prunus_persica	Prupe.3G297000_v2.0.a1 Prupe.3G297000_v2.0.a1 Prupe.3G297000_v2.0.a1 Prupe.3G297600_v2.0.a1
pyrus_communis	pycom111g01610 pycom17g01660
rosa_chinensis	RchiOBHm_Chr2g0173781
rosa_laevigata	RLG00000022221
rosa_multiflora	Rmu_co8383453.1_g000001 Rmu_sc0003188.1_g000007 Rmu_sc0034272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078630
rosa_rugosa	Rorug02G0572700 Rorug02G0572700 Rorug02G0572700
rosa_samantha	Rh2AG651700 Rh2BG662400 Rh2CG627100 Rh2DG677500
rosa_wichuraiana	Rw2G053500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	510
AciI	CCGC	2 cut(s)	206, 588
AclWI	GGATC	3 cut(s)	315, 374, 680
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	99, 155
AcyI	GRCGYC	1 cut(s)	511
AfaI	GTAC	2 cut(s)	232, 347
AfiI	CCNNNNNNNGG	3 cut(s)	520, 587, 627
AgsI	TTSAA	2 cut(s)	13, 394
AleI	CACNNNNGTG	1 cut(s)	681
AluBI	AGCT	6 cut(s)	36, 158, 246, 328, 440, 526
AluI	AGCT	6 cut(s)	36, 158, 246, 328, 440, 526
AlwI	GGATC	3 cut(s)	315, 374, 680
AoxI	GGCC	2 cut(s)	553, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	4 cut(s)	389, 405, 628, 695
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	628
BfaI	CTAG	2 cut(s)	120, 243
BfoI	RGCGCY	1 cut(s)	514
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	589
BlsI	GCNGC	1 cut(s)	590
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	3 cut(s)	467, 512, 592
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	100, 439
BpuEI	CTTGAG	2 cut(s)	41, 475
BpuMI	CCSGG	1 cut(s)	628
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	352, 469
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 587, 627
Bse118I	RCCGGY	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	2 cut(s)	600, 720
BseDI	CCNNGG	2 cut(s)	352, 469
BseLI	CCNNNNNNNGG	3 cut(s)	520, 587, 627
BseMI	GCAATG	2 cut(s)	600, 720
BseMII	CTCAG	2 cut(s)	225, 324
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	536
BshFI	GGCC	2 cut(s)	555, 591
BshNI	GGYRCC	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	514, 628
BslI	CCNNNNNNNGG	3 cut(s)	520, 587, 627
BsnI	GGCC	2 cut(s)	555, 591
Bsp143I	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
BspACI	CCGC	2 cut(s)	206, 588
BspANI	GGCC	2 cut(s)	555, 591
BspCNI	CTCAG	2 cut(s)	226, 325
BspLI	GGNNCC	3 cut(s)	467, 512, 592
BspPI	GGATC	3 cut(s)	315, 374, 680
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	2 cut(s)	600, 720
BsrFI	RCCGGY	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	352, 469
BssMI	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	152, 156, 208
BstDEI	CTNAG	2 cut(s)	234, 333
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	7 cut(s)	188, 300, 310, 315, 382, 611, 688
BstMBI	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 669
BstSCI	CCNGG	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	555, 591
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	152, 156, 208
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	231, 346
CviQI	GTAC	2 cut(s)	231, 346
DdeI	CTNAG	2 cut(s)	234, 333
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	7 cut(s)	187, 299, 309, 314, 381, 610, 687
DpnII	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	99, 155
EcoT14I	CCWWGG	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	454
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	469
FaiI	YATR	4 cut(s)	60, 212, 507, 727
FalI	AAGNNNNNCTT	4 cut(s)	429, 461, 605, 637
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	589
Fsp4HI	GCNGC	1 cut(s)	589
FspBI	CTAG	2 cut(s)	120, 243
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	2 cut(s)	555, 591
HapII	CCGG	2 cut(s)	514, 628
HhaI	GCGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	511
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	335, 422, 692
HpaII	CCGG	2 cut(s)	514, 628
HphI	GGTGA	4 cut(s)	389, 405, 628, 695
Hpy166II	GTNNAC	2 cut(s)	434, 636
Hpy188I	TCNGA	6 cut(s)	79, 174, 312, 340, 427, 544
Hpy188III	TCNNGA	4 cut(s)	98, 295, 492, 689
Hpy8I	GTNNAC	2 cut(s)	434, 636
HpyAV	CCTTC	4 cut(s)	74, 176, 456, 560
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	51, 191, 452, 605, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 669
HpyF3I	CTNAG	2 cut(s)	234, 333
Hsp92I	GRCGYC	1 cut(s)	511
HspAI	GCGC	1 cut(s)	511
KasI	GGCGCC	1 cut(s)	510
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
LmnI	GCTCC	2 cut(s)	471, 523
LweI	GCATC	2 cut(s)	100, 439
MaeI	CTAG	2 cut(s)	120, 243
MaeIII	GTNAC	2 cut(s)	693, 715
MalI	GATC	7 cut(s)	187, 299, 309, 314, 381, 610, 687
MboI	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
MboII	GAAGA	3 cut(s)	119, 161, 353
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	3 cut(s)	199, 219, 359
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	344, 701
MnlI	CCTC	6 cut(s)	16, 113, 302, 362, 381, 514
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	588
MspI	CCGG	2 cut(s)	514, 628
MspR9I	CCNGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	203, 669
NarI	GGCGCC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	628
NdeII	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
NlaIV	GGNNCC	3 cut(s)	467, 512, 592
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	693, 715
NsiI	ATGCAT	1 cut(s)	454
OliI	CACNNNNGTG	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	590
PleI	GAGTC	2 cut(s)	343, 700
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	2 cut(s)	343, 700
PspN4I	GGNNCC	3 cut(s)	467, 512, 592
PspPI	GGNCC	1 cut(s)	590
RsaI	GTAC	2 cut(s)	232, 347
RsaNI	GTAC	2 cut(s)	231, 346
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	1 cut(s)	589
Sau3AI	GATC	7 cut(s)	185, 297, 307, 312, 379, 608, 685
Sau96I	GGNCC	1 cut(s)	590
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	2 cut(s)	344, 701
ScrFI	CCNGG	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	100, 439
SfoI	GGCGCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	2 cut(s)	20, 490
SmoI	CTYRAG	2 cut(s)	20, 490
Sse9I	AATT	3 cut(s)	199, 219, 359
SsiI	CCGC	2 cut(s)	206, 588
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	2 cut(s)	120, 243
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	105, 460, 705
TasI	AATT	3 cut(s)	199, 219, 359
TatI	WGTACW	2 cut(s)	230, 345
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	693, 715
Tsp45I	GTSAC	2 cut(s)	693, 715
TspDTI	ATGAA	2 cut(s)	561, 579
TspRI	CASTG	1 cut(s)	151
XspI	CTAG	2 cut(s)	120, 243
ZrmI	AGTACT	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.