FvH4_6g52940
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
38867932 .. 38872685
4754 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52940.t1

Sequence Viewer

Length: 1605 bp
ATGAAATCCGACTTTGGTCATGTGGAATTGTTCACACTGCATTTCTGTGTAAACAAGTGGACATTGGTCAGGCATTCGCGCTTCAACCTCTCTCTGCCACCTGATACTGTCAGCCTCCTACCCCTGACCGGTTTATCTGATGCCGATCACCAGCTGCAGTTACTGTTTTTCCTTCGTAACCACAACAATGTCATGGGGATCAAATTCGACCAATTTGACGGCTGGATGTGGCATCCCACTGTCAACTTCACCCTGCATCTAATCGGTATTCAGGGCTCACAGCCTCCTACCTACAGTGCTATAGCCATGGGGCCTCGCATCATCCCAATGGAGAGAGATGAGGATTCTGATGATTCAAGCCCTCCCAAGTTTGCCGCCCGTGATGGTGCAGTACCACCACAACAACCCTTCAGTTTCAAAGCGCAAGCTCATGAGTTTTCATCTCTTGGTGCCAAAAAGCCCAGCAGAAATGGAAAAGAGAAAAGCGGTAAAAGCACAAGGCCAAGCAGGTCCAAAGGTTCTTCAAAGACCCAAGAACAATCCACTTTCCTTTTGAGGCAGGGCATTTCCCAGAATGGACTTAAGTCTGCTCGTTACATGTCCAAGCCTTTTGTTGGAGGTCTTTTGATTTCCATCGATTACAATTCACTCAAAGAGGCATTTTCTGGCTTTGGTGACGTGACTGATGGTAAGTGTTCATTGGGTCTGTTACCTGAGAATCTGAGATTCGTAACTCACGGTATGGTAGATGAAGTTGAAGGAAGCAACAAGGACTTTGATTTAGGCTCTATGGGAAAGATTTACAAAGGAAAGTTGGAAAATGGGACCTCAGTTGCAATCAGATCTCTGGCTATATCAAAAAAATGTTCAACTCAAAACCTTAAAGTTCAGCTGGATTTGCTCTCAAAGCTTCACCATCCACACTTGGTTGTCCTGTTGGGTCACTGCATTGAGTGTAGCGGACAAGATGATTCTGGTGGCAACAGACTTTTCCTCGTATATGAATACATCTCTGGTGGGAACTACCGTACCGATCTTTCAGAAAACTATCCAGAGAAGGTTCTCAAGTGGCCTGATAGATTGGCAATCCTTATTGGAGTTGCAAAAGCTGTCCATTTTCTACACACTGGGGTTATTCCAGGTTCTTTCAACAATCGATTGAAAACAAACAACATATTGCTAGATGAGCATAGGATTCCAAAGCTGAGTGACTATGGGATGTCTATCATCACAGAAGAAACTGCAAAAGGAGAAGGCCCAAAATCCTGCGGTAAAAATGATCTGGAGGGTGATGTTTACAACTTTGGATTTATACTACTTGAATCACTTGTTGGTCCTAGAATAAGTGGAATGGGCGAAGCCTTTGTGCTGAACGAAATGGCATCGTTTGGGAGCCAAGATGGCCGAAGAAGAATTGTGGATCCAATCGTGTTGATTACTTGCTCACAAGAGTCATTATCCATTGTGGTATCGATCACAAAGAAATGCATATTTCCAGAAGTATCAACTCGTCCCTCTTTTGAAGATGTGCTTTGGAACCTGCAGCATGCAGCTCAAGTCCAGGCCACCTGTCTGATATGCTCTTTACTACTGTCTTGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

58.96

Weight (kDa)

7.95

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 260 - 444 1.2e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 262 - 415 1.2e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 498, 1548
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 1 cut(s) 79
AciI CCGC 4 cut(s) 375, 486, 960, 1269
AclWI GGATC 3 cut(s) 206, 1415, 1428
AcoI YGGCCR 1 cut(s) 1402
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 2 cut(s) 393, 1030
AfiI CCNNNNNNNGG 2 cut(s) 128, 614
AflII CTTAAG 1 cut(s) 581
AflIII ACRYGT 1 cut(s) 597
AgeI ACCGGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 679
AjnI CCWGG 2 cut(s) 1138, 1560
AjuI GAANNNNNNNTTGG 2 cut(s) 1314, 1346
AluBI AGCT 7 cut(s) 154, 428, 892, 910, 1109, 1204, 1553
AluI AGCT 7 cut(s) 154, 428, 892, 910, 1109, 1204, 1553
AlwI GGATC 3 cut(s) 206, 1415, 1428
AlwNI CAGNNNCTG 1 cut(s) 163
AoxI GGCC 6 cut(s) 311, 500, 1070, 1255, 1402, 1563
ApeKI GCWGC 3 cut(s) 154, 1543, 1550
ApoI RAATTY 1 cut(s) 203
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 2 cut(s) 81, 424
AspS9I GGNCC 5 cut(s) 311, 510, 825, 1256, 1334
AsuHPI GGTGA 5 cut(s) 140, 241, 686, 905, 1301
AvaII GGWCC 3 cut(s) 510, 825, 1334
BaeI ACNNNNGTAYC 2 cut(s) 1012, 1045
BamHI GGATCC 1 cut(s) 1420
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 141, 1555, 1562
BccI CCATC 5 cut(s) 377, 641, 680, 924, 1394
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 1140, 1562
BfaI CTAG 2 cut(s) 1181, 1338
BfmI CTRYAG 4 cut(s) 155, 292, 300, 1541
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 2 cut(s) 498, 1548
BglI GCCNNNNNGGC 1 cut(s) 1401
BglII AGATCT 1 cut(s) 842
BisI GCNGC 4 cut(s) 155, 375, 1544, 1551
BlsI GCNGC 4 cut(s) 156, 376, 1545, 1552
Bme1390I CCNGG 2 cut(s) 1140, 1562
Bme18I GGWCC 3 cut(s) 510, 825, 1334
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 5 cut(s) 311, 510, 825, 1256, 1334
BmiI GGNNCC 6 cut(s) 312, 451, 826, 1394, 1422, 1538
BmrFI CCNGG 2 cut(s) 1140, 1562
BmrI ACTGGG 1 cut(s) 1137
BmsI GCATC 5 cut(s) 130, 241, 265, 327, 1391
BmuI ACTGGG 1 cut(s) 1137
BoxI GACNNNNGTC 3 cut(s) 15, 65, 583
BpmI CTGGAG 1 cut(s) 1304
BpuEI CTTGAG 2 cut(s) 1049, 1539
Bsa29I ATCGAT 3 cut(s) 636, 1156, 1472
BsaBI GATNNNNATC 3 cut(s) 144, 632, 1223
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 614
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 1132
Bse8I GATNNNNATC 3 cut(s) 144, 632, 1223
BseBI CCWGG 2 cut(s) 1140, 1562
BseCI ATCGAT 3 cut(s) 636, 1156, 1472
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 5 cut(s) 231, 232, 321, 916, 1224
BseJI GATNNNNATC 3 cut(s) 144, 632, 1223
BseLI CCNNNNNNNGG 2 cut(s) 128, 614
BseMII CTCAG 4 cut(s) 705, 713, 843, 1196
BseNI ACTGG 1 cut(s) 1132
BseXI GCAGC 3 cut(s) 141, 1555, 1562
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 6 cut(s) 313, 502, 1072, 1257, 1404, 1565
BshNI GGYRCC 1 cut(s) 449
BshTI ACCGGT 1 cut(s) 128
BshVI ATCGAT 3 cut(s) 636, 1156, 1472
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 2 cut(s) 838, 1497
BslI CCNNNNNNNGG 2 cut(s) 128, 614
BsmFI GGGAC 2 cut(s) 838, 1497
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 6 cut(s) 313, 502, 1072, 1257, 1404, 1565
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 4 cut(s) 375, 486, 960, 1269
BspANI GGCC 6 cut(s) 313, 502, 1072, 1257, 1404, 1565
BspCNI CTCAG 4 cut(s) 706, 714, 842, 1197
BspDI ATCGAT 3 cut(s) 636, 1156, 1472
BspFNI CGCG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 6 cut(s) 312, 451, 826, 1394, 1422, 1538
BspMAI CTGCAG 2 cut(s) 159, 1545
BspMI ACCTGC 2 cut(s) 498, 1548
BspPI GGATC 3 cut(s) 206, 1415, 1428
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 581
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 1132
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 1140, 1562
Bst4CI ACNGT 7 cut(s) 109, 165, 241, 296, 740, 1028, 1593
BstAFI CTTAAG 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 426, 1548
BstDEI CTNAG 4 cut(s) 714, 722, 829, 1205
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 5 cut(s) 231, 232, 321, 916, 1224
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 2 cut(s) 81, 424
BstKTI GATC 7 cut(s) 148, 201, 845, 1036, 1282, 1423, 1476
BstMBI GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
BstMWI GCNNNNNNNGC 5 cut(s) 492, 898, 907, 1186, 1401
BstNI CCWGG 2 cut(s) 1140, 1562
BstNSI RCATGY 2 cut(s) 601, 1550
BstPAI GACNNNNGTC 3 cut(s) 15, 65, 583
BstSCI CCNGG 2 cut(s) 1138, 1560
BstSFI CTRYAG 4 cut(s) 155, 292, 300, 1541
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 141, 1555, 1562
BstX2I RGATCY 2 cut(s) 842, 1420
BstYI RGATCY 2 cut(s) 842, 1420
Bsu15I ATCGAT 3 cut(s) 636, 1156, 1472
BsuRI GGCC 6 cut(s) 313, 502, 1072, 1257, 1404, 1565
BsuTUI ATCGAT 3 cut(s) 636, 1156, 1472
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 679
BtsCI GGATG 5 cut(s) 231, 232, 321, 916, 1224
BtsI GCAGTG 2 cut(s) 35, 943
BtsIMutI CAGTG 5 cut(s) 35, 237, 301, 943, 1125
BveI ACCTGC 2 cut(s) 498, 1548
Cac8I GCNNGC 2 cut(s) 426, 1548
CaiI CAGNNNCTG 1 cut(s) 163
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 81, 424
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 311, 510, 825, 1256, 1334
ClaI ATCGAT 3 cut(s) 636, 1156, 1472
Csp6I GTAC 2 cut(s) 392, 1029
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 6 cut(s) 20, 193, 307, 431, 598, 1547
CviQI GTAC 2 cut(s) 392, 1029
DdeI CTNAG 4 cut(s) 714, 722, 829, 1205
DpnI GATC 7 cut(s) 147, 200, 844, 1035, 1281, 1422, 1475
DpnII GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
EaeI YGGCCR 1 cut(s) 1402
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 278
Eco47I GGWCC 3 cut(s) 510, 825, 1334
Eco57I CTGAAG 1 cut(s) 394
EcoO109I RGGNCCY 2 cut(s) 311, 825
EcoRII CCWGG 2 cut(s) 1138, 1560
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 1490
EcoT38I GRGCYC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 23, 196, 310, 434, 601, 1550
FalI AAGNNNNNCTT 2 cut(s) 1515, 1547
FaqI GGGAC 2 cut(s) 838, 1497
FatI CATG 6 cut(s) 19, 192, 306, 430, 597, 1546
Fnu4HI GCNGC 4 cut(s) 155, 375, 1544, 1551
FokI GGATG 5 cut(s) 219, 238, 308, 903, 1231
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 4 cut(s) 155, 375, 1544, 1551
FspBI CTAG 2 cut(s) 1181, 1338
GlaI GCGC 2 cut(s) 80, 423
GluI GCNGC 4 cut(s) 155, 375, 1544, 1551
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 1304
HaeIII GGCC 6 cut(s) 313, 502, 1072, 1257, 1404, 1565
HapII CCGG 1 cut(s) 129
HhaI GCGC 2 cut(s) 81, 424
Hin1II CATG 6 cut(s) 23, 196, 310, 434, 601, 1550
Hin6I GCGC 2 cut(s) 79, 422
HinP1I GCGC 2 cut(s) 79, 422
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 8 cut(s) 344, 353, 718, 726, 971, 1195, 1322, 1451
HpaII CCGG 1 cut(s) 129
HphI GGTGA 5 cut(s) 140, 241, 686, 905, 1301
Hpy166II GTNNAC 5 cut(s) 33, 52, 60, 244, 1297
Hpy188I TCNGA 7 cut(s) 10, 139, 349, 723, 842, 1042, 1575
Hpy188III TCNNGA 4 cut(s) 431, 1052, 1283, 1496
Hpy8I GTNNAC 5 cut(s) 33, 52, 60, 244, 1297
HpyAV CCTTC 5 cut(s) 182, 418, 752, 1051, 1247
HpyCH4III ACNGT 7 cut(s) 109, 165, 241, 296, 740, 1028, 1593
HpyCH4IV ACGT 1 cut(s) 678
HpyF10VI GCNNNNNNNGC 5 cut(s) 492, 898, 907, 1186, 1401
HpyF3I CTNAG 4 cut(s) 714, 722, 829, 1205
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 6 cut(s) 23, 196, 310, 434, 601, 1550
HspAI GCGC 2 cut(s) 79, 422
Kzo9I GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
LmnI GCTCC 1 cut(s) 1392
Lsp1109I GCAGC 3 cut(s) 141, 1555, 1562
LweI GCATC 5 cut(s) 130, 241, 265, 327, 1391
MaeI CTAG 2 cut(s) 1181, 1338
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 9 cut(s) 159, 176, 593, 674, 679, 708, 730, 941, 1208
MalI GATC 7 cut(s) 147, 200, 844, 1035, 1281, 1422, 1475
MboI GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
MboII GAAGA 5 cut(s) 513, 1247, 1419, 1422, 1535
MflI RGATCY 2 cut(s) 842, 1420
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 5 cut(s) 26, 203, 212, 643, 1413
MlyI GAGTC 1 cut(s) 1460
MmeI TCCRAC 3 cut(s) 33, 595, 795
Mph1103I ATGCAT 1 cut(s) 1490
MseI TTAA 2 cut(s) 582, 882
MslI CAYNNNNRTG 3 cut(s) 45, 186, 326
MspA1I CMGCKG 2 cut(s) 154, 892
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 1140, 1562
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 2 cut(s) 1140, 1562
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 5 cut(s) 492, 898, 907, 1186, 1401
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
NlaIII CATG 6 cut(s) 23, 196, 310, 434, 601, 1550
NlaIV GGNNCC 6 cut(s) 312, 451, 826, 1394, 1422, 1538
NmuCI GTSAC 4 cut(s) 674, 679, 941, 1208
NsiI ATGCAT 1 cut(s) 1490
NspI RCATGY 2 cut(s) 601, 1550
PaeI GCATGC 1 cut(s) 1550
PagI TCATGA 1 cut(s) 430
PciI ACATGT 1 cut(s) 597
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 7 cut(s) 344, 353, 718, 726, 971, 1195, 1322
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 4 cut(s) 156, 376, 1545, 1552
PleI GAGTC 1 cut(s) 1459
PpsI GAGTC 1 cut(s) 1459
PpuMI RGGWCCY 1 cut(s) 825
PscI ACATGT 1 cut(s) 597
PshAI GACNNNNGTC 3 cut(s) 15, 65, 583
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 1138, 1560
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 1138, 1560
PspN4I GGNNCC 6 cut(s) 312, 451, 826, 1394, 1422, 1538
PspPI GGNCC 5 cut(s) 311, 510, 825, 1256, 1334
PspPPI RGGWCCY 1 cut(s) 825
PstI CTGCAG 2 cut(s) 159, 1545
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 842, 1420
PvuII CAGCTG 2 cut(s) 154, 892
RsaI GTAC 2 cut(s) 393, 1030
RsaNI GTAC 2 cut(s) 392, 1029
RseI CAYNNNNRTG 3 cut(s) 45, 186, 326
SaqAI TTAA 2 cut(s) 582, 882
SatI GCNGC 4 cut(s) 155, 375, 1544, 1551
Sau3AI GATC 7 cut(s) 145, 198, 842, 1033, 1279, 1420, 1473
Sau96I GGNCC 5 cut(s) 311, 510, 825, 1256, 1334
SchI GAGTC 1 cut(s) 1460
ScrFI CCNGG 2 cut(s) 1140, 1562
SduI GDGCHC 1 cut(s) 278
SfaNI GCATC 5 cut(s) 130, 241, 265, 327, 1391
SfcI CTRYAG 4 cut(s) 155, 292, 300, 1541
SinI GGWCC 3 cut(s) 510, 825, 1334
SmiMI CAYNNNNRTG 3 cut(s) 45, 186, 326
SmlI CTYRAG 3 cut(s) 581, 1064, 1554
SmoI CTYRAG 3 cut(s) 581, 1064, 1554
SphI GCATGC 1 cut(s) 1550
Sse9I AATT 5 cut(s) 26, 203, 212, 643, 1413
SsiI CCGC 4 cut(s) 375, 486, 960, 1269
SspMI CTAG 2 cut(s) 1181, 1338
StyD4I CCNGG 2 cut(s) 1138, 1560
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 7 cut(s) 109, 165, 241, 296, 740, 1028, 1593
TaiI ACGT 1 cut(s) 681
TaqI TCGA 4 cut(s) 207, 636, 1156, 1472
TasI AATT 5 cut(s) 26, 203, 212, 643, 1413
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 7 cut(s) 344, 353, 718, 726, 971, 1195, 1322
Tru1I TTAA 2 cut(s) 582, 882
Tru9I TTAA 2 cut(s) 582, 882
TscAI CASTG 5 cut(s) 42, 244, 301, 950, 1132
TseFI GTSAC 4 cut(s) 674, 679, 941, 1208
TseI GCWGC 3 cut(s) 154, 1543, 1550
Tsp45I GTSAC 4 cut(s) 674, 679, 941, 1208
TspDTI ATGAA 5 cut(s) 17, 429, 687, 765, 1017
TspRI CASTG 5 cut(s) 42, 244, 301, 950, 1132
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 3 cut(s) 510, 825, 1334
XapI RAATTY 1 cut(s) 203
XceI RCATGY 2 cut(s) 601, 1550
XspI CTAG 2 cut(s) 1181, 1338
Zsp2I ATGCAT 1 cut(s) 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.