Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004597

Physical Location & Seq

Genomic Coordinates Forward (+)

90449162 .. 90453834

Gene Structure 4673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG686500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGGAGATAAGCTTTTTAATGTCACCGAGTTCAATGGATTTGCAATTCCCAATAAAACTCTTTCTGAGAAGTTCTCCATTGATTCTTTTGTGACCACATTGTCAAGGTTGCCTAGCTTGAGGGTTCTTAGCTTAGTGTCTTTGGGGATTTGGGGACGACTTCCTGATAAGATTCATAGGTTATCTTCGCTTGAAGTCTTAGACCTGAGCTCAAATTTCATATTTGGTTCAATTCCCCCTAAGATATCCACAATGGTCAAGCTTCACACTCTAAGCCTGGAGGTCAATTATTTCAATGAGACCGTTCCTGATTGGTTGGACTCGTTATCAAACCTCACCATTTTGTGCTTGAAGAACAATCAGCTCAAGGGTCAGTTTCCTTCTTCAATATGCAGAATTAAGGCGCTCACTGACCTTGCTCTGTCTCACAATGAGCTTTCTGGAAAATTACCTGACATGAGTACTTTAACCAGCCTGCATGTATTGGATTTGAGAGAAAATGATTTAGATTCTGAACTACCAGTGTTGCCAAAAAGATTGGTTACAGTACTTCTTAGCAAGAACTCGTTCTCAGGAAAGATTCCGGTGCAATTTGGTGATTTGAGTCAGCTTCAACACCTTGATCTATCATTCAATTATCTCAGTGGAGCACCACCCTCAAACTTGTTCTCTTTGCCAGAAATCAGTTATCTGAATTTAGCATCCAATATGCTGAGTGGACCATTTCCAAACGGTCTAAATTGTGGTGGCAAACTTGGTTTTGTTGATATTTCTAATAACAAGTTAGCAGGGGATCTTCCTTCTTGCCTGGGTAGTACCTCAGATGAGAGAGTTGTTGAACTCAGCGGTAACTGTTTGGCGAATGCTTCCCAACACCAGCATGACCATTCATATTGTACAAAGGCTCTTGCAAGGAGAAAACAATCTAGTGTGAGAGAGATTGTGGTGCTAGTTGCTGTTGCCATCGGAGCTCTTCTTGTTTTAGTACTTTCTGTACTTGCGGTTATTTGCTTGTGTAGAAGATACCGTTCAAGGAAGTCTGAGCATAACATATTTGCAAAAGCTGTGCCAGATAATTCACCAAATGATCTTTGCTCGAACATCGTTACAAATGCTAGATATATATCTCAAGCAGTGAAATTAGAGACACATGGTGCCCCAGTATGTCGATTGTTTTCACTTGAAGAGTTGAAGGAAGTAACAAACGACTTTAATTTCTCAATGTTTTTGGGTGAAGGCTCTATGGGAAAGCTTTACAAAGGCAAGTTGGAAAATGGGACCTCAGTTGCAATCAGATCTCTGACTATATCAAAAAAATGTTCTACTAATAACCTTAAAGTTCAGCTGGATTCACTCTCAAAGCTTCACCATCCTCACTTGGTTGGCCTGTTGGGTCATTGCATTGACAGTAGTGGACAAGATGATTCTGGTGGCAAAAGACTTTTCCTTGTATATGAATACATCTCTAGTGGGAATTACCGTACCTATCTTTCAGGTCTGTATTCATTACCGGGAGCTTCAAAATTCCAGTCTATACTGGAAGTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

516

Amino Acids

56.56

Weight (kDa)

8.6

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	32 - 237	5.5e-13	Leucine-rich repeat region
LRR_8	PF13855	87 - 146	2.2e-07	Leucine rich repeat
LRR_8	PF13855	179 - 238	2.8e-08	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	407 - 498	1.1e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14210 AT5G14210 AT5G14210
fragaria_vesca	FvH4_6g52940 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110
malus_domestica	MD09G1014600.v1.1 MD17G1014600.v1.1
prunus_persica	Prupe.3G303100_v2.0.a1 Prupe.3G303100_v2.0.a1
pyrus_communis	pycom111g01190
rosa_chinensis	RchiOBHm_Chr2g0174981
rosa_laevigata	RLG00000022304
rosa_multiflora	Rmu_co8187456.1_g000001 Rmu_sc0001277.1_g000005
rosa_roxburghii	Rroxscaffold_2G00077610
rosa_rugosa	Rorug02G0580500 Rorug02G0580600 Rorug02G0580700 Rorug02G0580700 Rorug02G0580800
rosa_samantha	Rh2AG661600 Rh2BG672900 Rh2CG636000 Rh2DG686500
rosa_wichuraiana	Rw2G054230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	1154
AciI	CCGC	2 cut(s)	846, 1001
AclWI	GGATC	1 cut(s)	801
AcsI	RAATTY	3 cut(s)	214, 694, 1523
AdeI	CACNNNGTG	1 cut(s)	1154
AfaI	GTAC	7 cut(s)	463, 549, 817, 898, 987, 996, 1483
AjnI	CCWGG	2 cut(s)	276, 807
Alw21I	GWGCWC	3 cut(s)	212, 652, 973
Alw26I	GTCTC	3 cut(s)	293, 429, 1139
AlwI	GGATC	1 cut(s)	801
AoxI	GGCC	1 cut(s)	1384
ApoI	RAATTY	3 cut(s)	214, 694, 1523
ArsI	GACNNNNNNTTYG	2 cut(s)	1514, 1546
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	719, 1278
AsuC2I	CCSGG	1 cut(s)	1512
AsuHPI	GGTGA	6 cut(s)	16, 328, 608, 1071, 1244, 1358
AvaII	GGWCC	2 cut(s)	719, 1278
BaeGI	GKGCMC	1 cut(s)	1159
BanI	GGYRCC	1 cut(s)	1154
BanII	GRGCYC	2 cut(s)	212, 973
Bbv12I	GWGCWC	3 cut(s)	212, 652, 973
BccI	CCATC	2 cut(s)	971, 1377
BciT130I	CCWGG	2 cut(s)	278, 809
BcnI	CCSGG	1 cut(s)	1512
BcoDI	GTCTC	3 cut(s)	293, 429, 1139
BfaI	CTAG	5 cut(s)	114, 927, 950, 1116, 1467
BfoI	RGCGCY	1 cut(s)	407
BglII	AGATCT	1 cut(s)	1295
BmcAI	AGTACT	3 cut(s)	463, 549, 987
Bme1390I	CCNGG	3 cut(s)	278, 809, 1512
Bme18I	GGWCC	2 cut(s)	719, 1278
BmgT120I	GGNCC	2 cut(s)	719, 1278
BmiI	GGNNCC	2 cut(s)	1156, 1279
BmrFI	CCNGG	3 cut(s)	278, 809, 1512
BmrI	ACTGGG	1 cut(s)	1154
BmsI	GCATC	1 cut(s)	710
BmuI	ACTGGG	1 cut(s)	1154
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	3 cut(s)	139, 350, 1113
BpuMI	CCSGG	1 cut(s)	1512
BsaBI	GATNNNNATC	1 cut(s)	1123
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	808
BsaWI	WCCGGW	1 cut(s)	583
Bse1I	ACTGG	4 cut(s)	521, 1160, 1528, 1542
Bse3DI	GCAATG	1 cut(s)	1396
Bse8I	GATNNNNATC	1 cut(s)	1123
BseBI	CCWGG	2 cut(s)	278, 809
BseDI	CCNNGG	1 cut(s)	808
BseGI	GGATG	2 cut(s)	701, 1369
BseJI	GATNNNNATC	1 cut(s)	1123
BseMI	GCAATG	1 cut(s)	1396
BseMII	CTCAG	9 cut(s)	57, 197, 585, 655, 704, 834, 856, 1032, 1296
BseNI	ACTGG	4 cut(s)	521, 1160, 1528, 1542
BseSI	GKGCMC	1 cut(s)	1159
BshFI	GGCC	1 cut(s)	1386
BshNI	GGYRCC	1 cut(s)	1154
BsiHKAI	GWGCWC	3 cut(s)	212, 652, 973
BsiSI	CCGG	2 cut(s)	584, 1511
BslFI	GGGAC	2 cut(s)	168, 1291
BsmAI	GTCTC	3 cut(s)	293, 429, 1139
BsmFI	GGGAC	2 cut(s)	168, 1291
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	1 cut(s)	1386
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	4 cut(s)	212, 652, 973, 1159
Bsp1407I	TGTACA	1 cut(s)	896
Bsp143I	GATC	4 cut(s)	622, 793, 1087, 1295
BspACI	CCGC	2 cut(s)	846, 1001
BspANI	GGCC	1 cut(s)	1386
BspCNI	CTCAG	9 cut(s)	58, 198, 584, 654, 705, 833, 855, 1033, 1295
BspLI	GGNNCC	2 cut(s)	1156, 1279
BspPI	GGATC	1 cut(s)	801
BspQI	GCTCTTC	1 cut(s)	978
BspT107I	GGYRCC	1 cut(s)	1154
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	1396
BsrGI	TGTACA	1 cut(s)	896
BsrI	ACTGG	4 cut(s)	521, 1160, 1528, 1542
BssECI	CCNNGG	1 cut(s)	808
BssMI	GATC	4 cut(s)	622, 793, 1087, 1295
Bst2UI	CCWGG	2 cut(s)	278, 809
Bst4CI	ACNGT	7 cut(s)	304, 547, 734, 854, 1028, 1409, 1481
Bst6I	CTCTTC	2 cut(s)	978, 1179
BstAUI	TGTACA	1 cut(s)	896
BstC8I	GCNNGC	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	701, 1369
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	4 cut(s)	625, 796, 1090, 1298
BstMAI	GTCTC	3 cut(s)	293, 429, 1139
BstMBI	GATC	4 cut(s)	622, 793, 1087, 1295
BstMWI	GCNNNNNNNGC	1 cut(s)	968
BstNI	CCWGG	2 cut(s)	278, 809
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	276, 807, 1510
BstSLI	GKGCMC	1 cut(s)	1159
BstX2I	RGATCY	2 cut(s)	793, 1295
BstYI	RGATCY	2 cut(s)	793, 1295
BsuRI	GGCC	1 cut(s)	1386
BtsCI	GGATG	2 cut(s)	701, 1369
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	4 cut(s)	408, 528, 649, 1140
Cac8I	GCNNGC	1 cut(s)	476
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	719, 1278
Csp6I	GTAC	7 cut(s)	462, 548, 816, 897, 986, 995, 1482
CviAII	CATG	4 cut(s)	457, 479, 881, 1151
CviQI	GTAC	7 cut(s)	462, 548, 816, 897, 986, 995, 1482
DpnI	GATC	4 cut(s)	624, 795, 1089, 1297
DpnII	GATC	4 cut(s)	622, 793, 1087, 1295
DraIII	CACNNNGTG	1 cut(s)	1154
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	978, 1179
EarI	CTCTTC	2 cut(s)	978, 1179
Ecl136II	GAGCTC	2 cut(s)	210, 971
Eco24I	GRGCYC	2 cut(s)	212, 973
Eco31I	GGTCTC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	719, 1278
Eco53kI	GAGCTC	2 cut(s)	210, 971
EcoICRI	GAGCTC	2 cut(s)	210, 971
EcoO109I	RGGNCCY	1 cut(s)	1278
EcoRII	CCWGG	2 cut(s)	276, 807
EcoRV	GATATC	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	212, 973
FaeI	CATG	4 cut(s)	460, 482, 884, 1154
FaqI	GGGAC	2 cut(s)	168, 1291
FatI	CATG	4 cut(s)	456, 478, 880, 1150
FokI	GGATG	2 cut(s)	688, 1356
FriOI	GRGCYC	2 cut(s)	212, 973
FspBI	CTAG	5 cut(s)	114, 927, 950, 1116, 1467
GlaI	GCGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	1386
HapII	CCGG	2 cut(s)	584, 1511
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	4 cut(s)	460, 482, 884, 1154
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	4 cut(s)	11, 260, 1250, 1361
HinfI	GANTC	8 cut(s)	83, 172, 320, 509, 580, 604, 1349, 1424
HpaII	CCGG	2 cut(s)	584, 1511
HphI	GGTGA	6 cut(s)	16, 328, 608, 1071, 1244, 1358
Hpy166II	GTNNAC	2 cut(s)	719, 1415
Hpy188I	TCNGA	8 cut(s)	67, 514, 693, 823, 968, 1042, 1295, 1302
Hpy188III	TCNNGA	4 cut(s)	164, 308, 441, 573
Hpy8I	GTNNAC	2 cut(s)	719, 1415
HpyAV	CCTTC	4 cut(s)	390, 810, 1186, 1229
HpyCH4III	ACNGT	7 cut(s)	304, 547, 734, 854, 1028, 1409, 1481
HpyCH4V	TGCA	8 cut(s)	44, 393, 478, 589, 911, 1058, 1289, 1401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	968
Hsp92II	CATG	4 cut(s)	460, 482, 884, 1154
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	4 cut(s)	622, 793, 1087, 1295
LguI	GCTCTTC	1 cut(s)	978
LmnI	GCTCC	3 cut(s)	647, 968, 1514
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	5 cut(s)	114, 927, 950, 1116, 1467
MaeIII	GTNAC	6 cut(s)	22, 91, 541, 848, 1105, 1198
MalI	GATC	4 cut(s)	624, 795, 1089, 1297
MboI	GATC	4 cut(s)	622, 793, 1087, 1295
MboII	GAAGA	7 cut(s)	177, 364, 375, 788, 965, 1032, 1196
MflI	RGATCY	2 cut(s)	793, 1295
MhlI	GDGCHC	4 cut(s)	212, 652, 973, 1159
MlyI	GAGTC	2 cut(s)	314, 613
MmeI	TCCRAC	2 cut(s)	297, 1248
MnlI	CCTC	7 cut(s)	114, 274, 344, 667, 829, 1291, 1383
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	5 cut(s)	18, 399, 467, 1212, 1335
MslI	CAYNNNNRTG	1 cut(s)	879
MspA1I	CMGCKG	2 cut(s)	846, 1345
MspI	CCGG	2 cut(s)	584, 1511
MspR9I	CCNGG	3 cut(s)	278, 809, 1512
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	2 cut(s)	278, 809
MwoI	GCNNNNNNNGC	1 cut(s)	968
NciI	CCSGG	1 cut(s)	1512
NdeII	GATC	4 cut(s)	622, 793, 1087, 1295
NlaIII	CATG	4 cut(s)	460, 482, 884, 1154
NlaIV	GGNNCC	2 cut(s)	1156, 1279
NmuCI	GTSAC	2 cut(s)	22, 91
NspI	RCATGY	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	6 cut(s)	83, 172, 509, 580, 1349, 1424
PleI	GAGTC	2 cut(s)	314, 612
PpsI	GAGTC	2 cut(s)	314, 612
PpuMI	RGGWCCY	1 cut(s)	1278
Psp124BI	GAGCTC	2 cut(s)	212, 973
Psp5II	RGGWCCY	1 cut(s)	1278
Psp6I	CCWGG	2 cut(s)	276, 807
PspGI	CCWGG	2 cut(s)	276, 807
PspN4I	GGNNCC	2 cut(s)	1156, 1279
PspPI	GGNCC	2 cut(s)	719, 1278
PspPPI	RGGWCCY	1 cut(s)	1278
PsuI	RGATCY	2 cut(s)	793, 1295
PvuII	CAGCTG	1 cut(s)	1345
RsaI	GTAC	7 cut(s)	463, 549, 817, 898, 987, 996, 1483
RsaNI	GTAC	7 cut(s)	462, 548, 816, 897, 986, 995, 1482
RseI	CAYNNNNRTG	1 cut(s)	879
SacI	GAGCTC	2 cut(s)	212, 973
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	5 cut(s)	18, 399, 467, 1212, 1335
Sau3AI	GATC	4 cut(s)	622, 793, 1087, 1295
Sau96I	GGNCC	2 cut(s)	719, 1278
ScaI	AGTACT	3 cut(s)	463, 549, 987
SchI	GAGTC	2 cut(s)	314, 613
ScrFI	CCNGG	3 cut(s)	278, 809, 1512
SduI	GDGCHC	4 cut(s)	212, 652, 973, 1159
SfaNI	GCATC	1 cut(s)	710
SinI	GGWCC	2 cut(s)	719, 1278
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	3 cut(s)	118, 365, 1128
SmoI	CTYRAG	3 cut(s)	118, 365, 1128
SsiI	CCGC	2 cut(s)	846, 1001
SspMI	CTAG	5 cut(s)	114, 927, 950, 1116, 1467
SstI	GAGCTC	2 cut(s)	212, 973
StyD4I	CCNGG	3 cut(s)	276, 807, 1510
TaaI	ACNGT	7 cut(s)	304, 547, 734, 854, 1028, 1409, 1481
TaqI	TCGA	2 cut(s)	1097, 1168
TatI	WGTACW	5 cut(s)	461, 547, 896, 985, 994
TfiI	GAWTC	6 cut(s)	83, 172, 509, 580, 1349, 1424
Tru1I	TTAA	5 cut(s)	18, 399, 467, 1212, 1335
Tru9I	TTAA	5 cut(s)	18, 399, 467, 1212, 1335
TscAI	CASTG	4 cut(s)	415, 528, 649, 1140
TseFI	GTSAC	2 cut(s)	22, 91
Tsp45I	GTSAC	2 cut(s)	22, 91
TspDTI	ATGAA	5 cut(s)	164, 208, 879, 1470, 1494
TspRI	CASTG	4 cut(s)	415, 528, 649, 1140
VpaK11BI	GGWCC	2 cut(s)	719, 1278
XapI	RAATTY	3 cut(s)	214, 694, 1523
XceI	RCATGY	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	5 cut(s)	114, 927, 950, 1116, 1467
ZrmI	AGTACT	3 cut(s)	463, 549, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.