Rmu_sc0001277.1_g000005
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001277.1
OG0004597
Physical Location & Seq
Forward (+)
24764 .. 25604
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001277.1_g000005.1.cds

Sequence Viewer

Length: 841 bp
atggggcgtttttacttgtttttttcagtgattgtgtcatgcgctttgttcctccccagtacccatgagttgcaaacctctcagagccaagtgttaacgcagctgaggaaacatttagagttcccttccccattaggagttttggagaattacactggagacctctgtaacctatcttcccctgcacatctgagcatttcatgccaggaaaattctatcactgagctcaaagtcatgggagataagctttttaatgtcaccgagttcaatggatttgcaattcccaataaaactctttctgagaagttctccattgattcttttgtgaccacattgtcaaggttgcctagcttgagggttcttagcttagtgtctttggggatttggggacgacttcctgataagattcataggttatcttcgcttgaagtcttagacctgagctcaaatttcatatttggttcaattccccctaagatatccacaatggtcaagcttcacactctaagcctggaggtcaattatttcaatgagactgttcctgattggttggactcgttatcaaacctcaccattttgtgcttgaagaacaatcagctcaagggtcagtttccttcttcaatatgcagaattaagacgctcactgaccttgctctgtctcacaatgagctttctggaaaattacctgacatgagtactttaaccagcctgcatgtattggatttgagagaaaatgatttagattctgaactaccagtgttgccaaaaagattggttacagtacttcttagcaagaactcgttctcaggaaagattccggtgcaatttggtgatttgagtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

280

Amino Acids

31.17

Weight (kDa)

6.38

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 334
AcsI RAATTY 2 cut(s) 211, 448
AfaI GTAC 3 cut(s) 61, 697, 783
AgsI TTSAA 6 cut(s) 268, 428, 465, 529, 586, 621
AjnI CCWGG 2 cut(s) 204, 510
AluBI AGCT 9 cut(s) 103, 226, 247, 351, 366, 444, 496, 598, 670
AluI AGCT 9 cut(s) 103, 226, 247, 351, 366, 444, 496, 598, 670
Alw21I GWGCWC 2 cut(s) 228, 446
Alw26I GTCTC 3 cut(s) 153, 527, 663
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 2 cut(s) 211, 448
Asp700I GAANNNNTTC 1 cut(s) 800
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 250, 562
BanII GRGCYC 2 cut(s) 228, 446
BarI GAAGNNNNNNTAC 2 cut(s) 160, 192
Bbv12I GWGCWC 2 cut(s) 228, 446
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 206, 512
BcoDI GTCTC 3 cut(s) 153, 527, 663
BfaI CTAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmcAI AGTACT 2 cut(s) 697, 783
Bme1390I CCNGG 2 cut(s) 206, 512
BmrFI CCNGG 2 cut(s) 206, 512
BmrI ACTGGG 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpmI CTGGAG 2 cut(s) 177, 533
Bpu10I CCTNAGC 2 cut(s) 104, 440
BpuEI CTTGAG 2 cut(s) 373, 584
BsaI GGTCTC 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 817
Bse1I ACTGG 3 cut(s) 57, 160, 755
BseBI CCWGG 2 cut(s) 206, 512
BseMII CTCAG 7 cut(s) 95, 95, 182, 213, 291, 431, 819
BseNI ACTGG 3 cut(s) 57, 160, 755
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 228, 446
BsiSI CCGG 1 cut(s) 818
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 153, 527, 663
BsmFI GGGAC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 228, 446
BspCNI CTCAG 7 cut(s) 94, 96, 183, 214, 292, 432, 818
BspTNI GGTCTC 1 cut(s) 153
BsrI ACTGG 3 cut(s) 57, 160, 755
Bst2UI CCWGG 2 cut(s) 206, 512
Bst4CI ACNGT 2 cut(s) 538, 781
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 710
BstHHI GCGC 1 cut(s) 44
BstMAI GTCTC 3 cut(s) 153, 527, 663
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 2 cut(s) 206, 512
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 204, 510
BstV1I GCAGC 1 cut(s) 112
BtsIMutI CAGTG 5 cut(s) 33, 153, 219, 642, 762
Cac8I GCNNGC 1 cut(s) 710
CfoI GCGC 1 cut(s) 44
CseI GACGC 1 cut(s) 646
Csp6I GTAC 3 cut(s) 60, 696, 782
CviAII CATG 6 cut(s) 39, 65, 201, 235, 691, 713
CviQI GTAC 3 cut(s) 60, 696, 782
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
Ecl136II GAGCTC 2 cut(s) 226, 444
Eco24I GRGCYC 2 cut(s) 228, 446
Eco31I GGTCTC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 480
Eco53kI GAGCTC 2 cut(s) 226, 444
EcoICRI GAGCTC 2 cut(s) 226, 444
EcoRII CCWGG 2 cut(s) 204, 510
EcoRV GATATC 1 cut(s) 480
EcoT38I GRGCYC 2 cut(s) 228, 446
FaeI CATG 6 cut(s) 42, 68, 204, 238, 694, 716
FaiI YATR 9 cut(s) 40, 66, 202, 236, 411, 455, 625, 692, 714
FaqI GGGAC 1 cut(s) 402
FatI CATG 6 cut(s) 38, 64, 200, 234, 690, 712
Fnu4HI GCNGC 1 cut(s) 101
FriOI GRGCYC 2 cut(s) 228, 446
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 2 cut(s) 177, 533
HapII CCGG 1 cut(s) 818
HgaI GACGC 1 cut(s) 646
HhaI GCGC 1 cut(s) 44
Hin1II CATG 6 cut(s) 42, 68, 204, 238, 694, 716
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 2 cut(s) 245, 494
HinfI GANTC 6 cut(s) 317, 406, 554, 743, 814, 838
HpaI GTTAAC 1 cut(s) 96
HpaII CCGG 1 cut(s) 818
HphI GGTGA 2 cut(s) 250, 562
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 4 cut(s) 84, 192, 301, 748
Hpy188III TCNNGA 4 cut(s) 398, 542, 675, 807
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 2 cut(s) 135, 624
HpyCH4III ACNGT 2 cut(s) 538, 781
HpyCH4V TGCA 6 cut(s) 73, 185, 278, 627, 712, 823
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
Hsp92II CATG 6 cut(s) 42, 68, 204, 238, 694, 716
HspAI GCGC 1 cut(s) 42
KspAI GTTAAC 1 cut(s) 96
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 4 cut(s) 167, 256, 325, 775
MboII GAAGA 4 cut(s) 168, 411, 598, 609
MhlI GDGCHC 2 cut(s) 228, 446
MluCI AATT 9 cut(s) 148, 211, 279, 448, 465, 520, 630, 680, 824
MlyI GAGTC 1 cut(s) 548
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 7 cut(s) 62, 88, 99, 173, 348, 508, 578
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 4 cut(s) 95, 252, 633, 701
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 818
MspR9I CCNGG 2 cut(s) 206, 512
MvaI CCWGG 2 cut(s) 206, 512
MwoI GCNNNNNNNGC 1 cut(s) 201
NlaIII CATG 6 cut(s) 42, 68, 204, 238, 694, 716
NmuCI GTSAC 2 cut(s) 256, 325
NspI RCATGY 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 4 cut(s) 317, 406, 743, 814
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
Psp124BI GAGCTC 2 cut(s) 228, 446
Psp6I CCWGG 2 cut(s) 204, 510
PspGI CCWGG 2 cut(s) 204, 510
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 3 cut(s) 61, 697, 783
RsaNI GTAC 3 cut(s) 60, 696, 782
SacI GAGCTC 2 cut(s) 228, 446
SaqAI TTAA 4 cut(s) 95, 252, 633, 701
SatI GCNGC 1 cut(s) 101
ScaI AGTACT 2 cut(s) 697, 783
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 2 cut(s) 206, 512
SduI GDGCHC 2 cut(s) 228, 446
SmlI CTYRAG 2 cut(s) 352, 599
SmoI CTYRAG 2 cut(s) 352, 599
Sse9I AATT 9 cut(s) 148, 211, 279, 448, 465, 520, 630, 680, 824
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 2 cut(s) 228, 446
StyD4I CCNGG 2 cut(s) 204, 510
TaaI ACNGT 2 cut(s) 538, 781
TasI AATT 9 cut(s) 148, 211, 279, 448, 465, 520, 630, 680, 824
TatI WGTACW 2 cut(s) 695, 781
TfiI GAWTC 4 cut(s) 317, 406, 743, 814
Tru1I TTAA 4 cut(s) 95, 252, 633, 701
Tru9I TTAA 4 cut(s) 95, 252, 633, 701
TscAI CASTG 5 cut(s) 33, 160, 226, 649, 762
TseFI GTSAC 2 cut(s) 256, 325
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 2 cut(s) 256, 325
TspDTI ATGAA 3 cut(s) 189, 398, 442
TspRI CASTG 5 cut(s) 33, 160, 226, 649, 762
XapI RAATTY 2 cut(s) 211, 448
XceI RCATGY 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 2 cut(s) 697, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.