Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004597

Physical Location & Seq

Genomic Coordinates Forward (+)

70469817 .. 70470344

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0580600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTCGTTCATGGAGAGTTTGATGGTATGGGGCCGGTGTTGGAGGTCCCTCTGAATCTCTTGGAGACCTGGTTTGCTATCAAAGGTCTGCCTTTGATTCTGCACAACAAGACGGCCCTGCATCTGGAGAAGGAAGAGCTCCTTGCGAAGCCGCCGACAGCAGCATTGACAGGCTTGTCCTTGGCCTCGGGGTTTCAACTTCGCAACCCTAGTCAAGAATCTGGGGGGAAGGAAGTTCAGTCTGGAGGTAGTAGTAGTTCTCTGGTGTCTTTTGGTACGAAGTCTACTGAAAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

99

Amino Acids

10.46

Weight (kDa)

5.5

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14210 AT5G14210 AT5G14210
fragaria_vesca	FvH4_6g52940 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110
malus_domestica	MD09G1014600.v1.1 MD17G1014600.v1.1
prunus_persica	Prupe.3G303100_v2.0.a1 Prupe.3G303100_v2.0.a1
pyrus_communis	pycom111g01190
rosa_chinensis	RchiOBHm_Chr2g0174981
rosa_laevigata	RLG00000022304
rosa_multiflora	Rmu_co8187456.1_g000001 Rmu_sc0001277.1_g000005
rosa_roxburghii	Rroxscaffold_2G00077610
rosa_rugosa	Rorug02G0580500 Rorug02G0580600 Rorug02G0580700 Rorug02G0580700 Rorug02G0580800
rosa_samantha	Rh2AG661600 Rh2BG672900 Rh2CG636000 Rh2DG686500
rosa_wichuraiana	Rw2G054230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	3 cut(s)	32, 114, 183
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	32, 46, 115
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	152, 162
BlsI	GCNGC	2 cut(s)	153, 163
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	3 cut(s)	32, 46, 115
BmiI	GGNNCC	2 cut(s)	33, 48
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	2 cut(s)	146, 264
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	180, 186
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	180, 186
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	34, 116, 185
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	34, 116, 185
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	34, 116, 185
BspLI	GGNNCC	2 cut(s)	33, 48
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	180, 186
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	34, 116, 185
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	32, 46, 115
CsiI	ACCWGGT	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	11, 297
CviJI	RGCY	6 cut(s)	34, 116, 139, 151, 174, 185
CviKI_1	RGCY	6 cut(s)	34, 116, 139, 151, 174, 185
CviQI	GTAC	1 cut(s)	276
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	14, 300
FaiI	YATR	3 cut(s)	12, 29, 298
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	10, 296
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	152, 162
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	152, 162
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	2 cut(s)	152, 162
GsuI	CTGGAG	2 cut(s)	146, 264
HaeIII	GGCC	3 cut(s)	34, 116, 185
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	14, 300
HinfI	GANTC	3 cut(s)	55, 97, 218
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	3 cut(s)	125, 215, 243
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	124, 223
HpyCH4V	TGCA	2 cut(s)	103, 121
Hsp92II	CATG	2 cut(s)	14, 300
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	9 cut(s)	48, 55, 82, 110, 131, 156, 207, 228, 248
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	130
MabI	ACCWGGT	1 cut(s)	68
MaeI	CTAG	1 cut(s)	210
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	37, 60, 196, 239
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
NlaIII	CATG	2 cut(s)	14, 300
NlaIV	GGNNCC	2 cut(s)	33, 48
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	55, 97, 218
PkrI	GCNGC	2 cut(s)	153, 163
PpuMI	RGGWCCY	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	33, 48
PspPI	GGNCC	3 cut(s)	32, 46, 115
PspPPI	RGGWCCY	1 cut(s)	46
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	129
SatI	GCNGC	2 cut(s)	152, 162
Sau96I	GGNCC	3 cut(s)	32, 46, 115
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	48, 71, 88, 141, 250
SexAI	ACCWGGT	1 cut(s)	68
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	46
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	180
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	55, 97, 218
TseI	GCWGC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.