Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004597

Physical Location & Seq

Genomic Coordinates Reverse (-)

70448145 .. 70448729

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0580500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATATTGCTGTCATTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTGGGCGTCTGCCTCCAACTCAAGTTTCCAGATGTGTCTACATATGCGACCGCCTACGGCACCGTGATGATGGACCTCATCATTATTGCGACATGCTTTTACATCGTCTCTTTAGTAGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTATGAAGATCTGATGAACAAAATTTGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCATCCTTATTTCACCATTCGGATGGATTGCACTCTTCTTCTGGACCACCTACCTTTTATGCTTCGTGAGTAAGTCTTACCAGGGGCTGAAAAAACTCTACCAAAGTGCAGTTGCACTGCTTGTTCAAGACTTTGGAGAATTGAAACAGAAGTTGGTTGATTTGAATCGCCGCATGATGGGCAGTAATACAATTGCGGCACTTGGTCGTGCCTATCAGACATTGAAGAACCTGATCATCAGGAATGAGGGGCGCATGACAGGGCATGAAGCCCAGAACACGAACCAGAACCAGAACAGCACCACTGAAGAACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.73

Weight (kDa)

7.64

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14210 AT5G14210 AT5G14210
fragaria_vesca	FvH4_6g52940 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110 FvH4_6g53110
malus_domestica	MD09G1014600.v1.1 MD17G1014600.v1.1
prunus_persica	Prupe.3G303100_v2.0.a1 Prupe.3G303100_v2.0.a1
pyrus_communis	pycom111g01190
rosa_chinensis	RchiOBHm_Chr2g0174981
rosa_laevigata	RLG00000022304
rosa_multiflora	Rmu_co8187456.1_g000001 Rmu_sc0001277.1_g000005
rosa_roxburghii	Rroxscaffold_2G00077610
rosa_rugosa	Rorug02G0580500 Rorug02G0580600 Rorug02G0580700 Rorug02G0580700 Rorug02G0580800
rosa_samantha	Rh2AG661600 Rh2BG672900 Rh2CG636000 Rh2DG686500
rosa_wichuraiana	Rw2G054230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	3 cut(s)	99, 436, 461
AcsI	RAATTY	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	392, 409, 430, 490
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	4 cut(s)	57, 89, 401, 433
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	121, 309
AsuHPI	GGTGA	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	121, 309
BanI	GGYRCC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	4 cut(s)	112, 163, 282, 436
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	183, 436, 462
BlsI	GCNGC	3 cut(s)	184, 437, 463
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	2 cut(s)	121, 309
BmgT120I	GGNCC	2 cut(s)	121, 309
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	2 cut(s)	173, 429
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	2 cut(s)	173, 429
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	2 cut(s)	267, 293
BseJI	GATNNNNATC	2 cut(s)	173, 429
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	208, 498
BspACI	CCGC	3 cut(s)	99, 436, 461
BspLI	GGNNCC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	2 cut(s)	208, 498
BssNI	GRCGYC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	21, 187
BstF5I	GGATG	2 cut(s)	267, 293
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	2 cut(s)	211, 501
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	208, 498
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 444
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	2 cut(s)	23, 144
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	267, 293
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	380, 567
Cac8I	GCNNGC	2 cut(s)	21, 187
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	121, 309
CseI	GACGC	1 cut(s)	43
CviAII	CATG	6 cut(s)	20, 28, 141, 439, 520, 530
CviJI	RGCY	3 cut(s)	182, 352, 536
CviKI_1	RGCY	3 cut(s)	182, 352, 536
DpnI	GATC	2 cut(s)	210, 500
DpnII	GATC	2 cut(s)	208, 498
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	121, 309
EcoRII	CCWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	6 cut(s)	23, 31, 144, 442, 523, 533
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	6 cut(s)	19, 27, 140, 438, 519, 529
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	183, 436, 462
FokI	GGATG	2 cut(s)	254, 300
Fsp4HI	GCNGC	3 cut(s)	183, 436, 462
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	183, 436, 462
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	6 cut(s)	23, 31, 144, 442, 523, 533
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	45, 174, 430
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	4 cut(s)	44, 213, 287, 483
Hpy188III	TCNNGA	5 cut(s)	77, 307, 331, 392, 505
Hpy8I	GTNNAC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	5 cut(s)	19, 23, 296, 374, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 444
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	23, 31, 144, 442, 523, 533
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	208, 498
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	179
MalI	GATC	2 cut(s)	210, 500
MboI	GATC	2 cut(s)	208, 498
MboII	GAAGA	5 cut(s)	218, 292, 295, 502, 584
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	3 cut(s)	222, 404, 456
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	71, 134, 239, 505
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	1 cut(s)	583
MslI	CAYNNNNRTG	2 cut(s)	113, 286
MspR9I	CCNGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	16, 444
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	208, 498
NlaIII	CATG	6 cut(s)	23, 31, 144, 442, 523, 533
NlaIV	GGNNCC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	23, 144
PaeI	GCATGC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	174, 430
PkrI	GCNGC	3 cut(s)	184, 437, 463
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	121, 309
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	113, 286
SaqAI	TTAA	1 cut(s)	583
SatI	GCNGC	3 cut(s)	183, 436, 462
Sau3AI	GATC	2 cut(s)	208, 498
Sau96I	GGNCC	2 cut(s)	121, 309
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	6 cut(s)	126, 184, 317, 321, 498, 580
SinI	GGWCC	2 cut(s)	121, 309
SmiMI	CAYNNNNRTG	2 cut(s)	113, 286
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	222, 404, 456
SsiI	CCGC	3 cut(s)	99, 436, 461
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	3 cut(s)	222, 404, 456
TauI	GCSGC	2 cut(s)	438, 464
TfiI	GAWTC	2 cut(s)	174, 430
Tru1I	TTAA	1 cut(s)	583
Tru9I	TTAA	1 cut(s)	583
TscAI	CASTG	2 cut(s)	387, 574
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	16, 219, 230, 546
TspRI	CASTG	2 cut(s)	387, 574
VpaK11BI	GGWCC	2 cut(s)	121, 309
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	2 cut(s)	23, 144
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.