FvH4_6g52971

Kelch repeat-containing protein At3g27220-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
38898496 .. 38902387
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52971.t1

Sequence Viewer

Length: 1299 bp
ATGGCCAGGCTTACCCAAAACCACACCACCTCTTCTTCTTCATCTTCAAAACTGAAATGGGTGATTCTGACATGTTGCGCGGCTCTACTTGGAGTGGCTCTGATTCTAGATTTCTTCTGGGCTTCGTCTTCTTATTCTTCATCTGCGTATTCCATTATTGGGTCTAACTTGGCGCTTCACAAAACTGCGACCCTAGTCGTACCAAATGTTACAGCCAACAATGCTGGCCAGAAAAAAGTTGTGGGAGACAAAAGGGAATATGCTAATGAGAGATTATTATCTGGGACATTTGCTGATATAGCTGCACCGGAGCTACCATGGGAGGAGATGCCACCAGCACCAGTGCCGCGTCTCGATGGAGCTGCAATACAGATTAAGAATCTATTTTACGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATATATTCAATTTCTCTGACAATACATGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTCACCTCTGATGGGAGATACATATATGTCATATCAGGACAATATGGCCCCCAATGCAGAGGGCCTACAGCTCATTCATTTGTGCTGGATACCGAGACAAAGAAATGGAGTAGTATACCCCCATTACCTTCTCCTAGGTACGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGGCATACACCTGGTGTGGAGCACTGGAGTATTGCTGTCAAGGATGGTAAAGCATTGGAGGAAAAATGGAGGAAAGAAGTACCTATTCCACGTGGGGGGCCACATAGGGCTACTGTTGTGATCAATGATCGCCTCTTTGTCATTGGTGGTCAAGAAGGTGATTTTATGGCCAAACCTGGTTCACCAATTTTCAAGTGCTCGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGATGAAATGAAATGGAAAGTGTTACCTCCTATGCCGAAACCAAACTCTCATGTAGAGTGTGCTTGGGTAATTCTCAACGATTCAATAATCATCACTGGCGGTACAACAGAAAAGAACCCAATCACCAAAAGGATGATCCTCGTTGGGGAGGTCTTCCAGTTTCACTTGGACTCGATGACATGGTCAGTGATCGGGAGGCTTCCATACCGAGTAAAAACCACATTAACTGCTTTTTGGAATGGTTACTTGTATTTTACATCTGGGCAGCGAGACAGAGGACCAGATAATCCACAGCCAAGAAAGGTTGTTAAAGACATGTTTAGAACCAAATTGAGCTTGTAG

Protein Analysis

433

Amino Acids

48.28

Weight (kDa)

9.29

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 122 - 353 2.8e-19 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 126 - 293 2.2e-08 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 169 - 292 5e-07 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 170 - 262 1e-07 FKB95, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 225 - 410 5.3e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27220
fragaria_vesca FvH4_6g52971
malus_domestica MD17G1015900.v1.1
prunus_persica Prupe.3G302200_v2.0.a1
pyrus_communis pycom17g01280
rosa_chinensis RchiOBHm_Chr2g0174691
rosa_laevigata RLG00000022286
rosa_multiflora Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii Rroxscaffold_2G00077930
rosa_rugosa Rorug02G0578800 Rorug02G0578900
rosa_samantha Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana Rw2G054070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 694
AccI GTMKAC 1 cut(s) 628
AccII CGCG 3 cut(s) 80, 349, 916
AciI CCGC 3 cut(s) 80, 347, 1056
AclWI GGATC 1 cut(s) 1087
AcoI YGGCCR 3 cut(s) 3, 226, 882
AcvI CACGTG 1 cut(s) 806
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 4 cut(s) 201, 653, 795, 1060
AfiI CCNNNNNNNGG 5 cut(s) 159, 525, 694, 809, 1102
AflIII ACRYGT 3 cut(s) 71, 390, 1272
AgsI TTSAA 4 cut(s) 48, 445, 907, 1041
AjnI CCWGG 3 cut(s) 5, 724, 889
AluBI AGCT 5 cut(s) 302, 313, 362, 584, 1293
AluI AGCT 5 cut(s) 302, 313, 362, 584, 1293
Alw21I GWGCWC 2 cut(s) 738, 914
Alw26I GTCTC 4 cut(s) 240, 356, 602, 1221
AlwI GGATC 1 cut(s) 1087
AoxI GGCC 6 cut(s) 3, 226, 559, 575, 812, 882
ApeKI GCWGC 3 cut(s) 302, 362, 1222
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 3 cut(s) 80, 175, 918
AspS9I GGNCC 4 cut(s) 560, 575, 812, 1235
AsuHPI GGTGA 5 cut(s) 73, 508, 884, 888, 1072
AvaII GGWCC 1 cut(s) 1235
AvrII CCTAGG 1 cut(s) 647
BalI TGGCCA 3 cut(s) 5, 228, 884
BbrPI CACGTG 1 cut(s) 806
BbsI GAAGAC 2 cut(s) 120, 1102
Bbv12I GWGCWC 2 cut(s) 738, 914
BbvI GCAGC 3 cut(s) 289, 349, 1234
BccI CCATC 5 cut(s) 350, 487, 518, 688, 752
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 3 cut(s) 7, 726, 891
BciVI GTATCC 1 cut(s) 595
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 4 cut(s) 240, 356, 602, 1221
BfaI CTAG 3 cut(s) 107, 194, 648
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 176
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 5 cut(s) 81, 303, 347, 363, 1223
BlnI CCTAGG 1 cut(s) 647
BlsI GCNGC 5 cut(s) 82, 304, 348, 364, 1224
Bme1390I CCNGG 3 cut(s) 7, 726, 891
Bme18I GGWCC 1 cut(s) 1235
BmgT120I GGNCC 4 cut(s) 560, 575, 812, 1235
BmiI GGNNCC 3 cut(s) 562, 686, 813
BmrFI CCNGG 3 cut(s) 7, 726, 891
BmsI GCATC 1 cut(s) 318
BoxI GACNNNNGTC 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 120, 1102
BplI GAGNNNNNCTC 2 cut(s) 669, 701
BpmI CTGGAG 2 cut(s) 642, 760
BsaAI YACGTR 2 cut(s) 391, 806
BsaBI GATNNNNATC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 317, 647
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 525, 694, 809, 1102
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 4 cut(s) 341, 743, 1057, 1114
Bse8I GATNNNNATC 1 cut(s) 277
BseBI CCWGG 3 cut(s) 7, 726, 891
BseDI CCNNGG 2 cut(s) 317, 647
BseGI GGATG 2 cut(s) 763, 1095
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 5 cut(s) 159, 525, 694, 809, 1102
BseNI ACTGG 4 cut(s) 341, 743, 1057, 1114
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 289, 349, 1234
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 3 cut(s) 80, 349, 916
BshFI GGCC 6 cut(s) 5, 228, 561, 577, 814, 884
BsiHKAI GWGCWC 2 cut(s) 738, 914
BsiSI CCGG 2 cut(s) 308, 715
BslFI GGGAC 2 cut(s) 298, 510
BslI CCNNNNNNNGG 5 cut(s) 159, 525, 694, 809, 1102
BsmAI GTCTC 4 cut(s) 240, 356, 602, 1221
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 2 cut(s) 298, 510
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 6 cut(s) 5, 228, 561, 577, 814, 884
Bsp1286I GDGCHC 2 cut(s) 738, 914
Bsp143I GATC 4 cut(s) 834, 841, 1092, 1146
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 3 cut(s) 80, 347, 1056
BspANI GGCC 6 cut(s) 5, 228, 561, 577, 814, 884
BspFNI CGCG 3 cut(s) 80, 349, 916
BspLI GGNNCC 3 cut(s) 562, 686, 813
BspPI GGATC 1 cut(s) 1087
BsrFI RCCGGY 1 cut(s) 714
BsrI ACTGG 4 cut(s) 341, 743, 1057, 1114
BssAI RCCGGY 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 317, 647
BssMI GATC 4 cut(s) 834, 841, 1092, 1146
BssNAI GTATAC 1 cut(s) 629
BssT1I CCWWGG 2 cut(s) 317, 647
Bst1107I GTATAC 1 cut(s) 629
Bst2UI CCWGG 3 cut(s) 7, 726, 891
Bst4CI ACNGT 1 cut(s) 829
Bst6I CTCTTC 1 cut(s) 37
BstBAI YACGTR 2 cut(s) 391, 806
BstC8I GCNNGC 4 cut(s) 226, 683, 914, 920
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 763, 1095
BstFNI CGCG 3 cut(s) 80, 349, 916
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 3 cut(s) 80, 175, 918
BstKTI GATC 4 cut(s) 837, 844, 1095, 1149
BstMAI GTCTC 4 cut(s) 240, 356, 602, 1221
BstMBI GATC 4 cut(s) 834, 841, 1092, 1146
BstMWI GCNNNNNNNGC 3 cut(s) 221, 299, 567
BstNI CCWGG 3 cut(s) 7, 726, 891
BstNSI RCATGY 2 cut(s) 75, 1276
BstPAI GACNNNNGTC 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 5, 724, 889
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 3 cut(s) 80, 349, 916
BstV1I GCAGC 3 cut(s) 289, 349, 1234
BstV2I GAAGAC 2 cut(s) 120, 1102
BstZ17I GTATAC 1 cut(s) 629
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 6 cut(s) 5, 228, 561, 577, 814, 884
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 2 cut(s) 763, 1095
BtsIMutI CAGTG 4 cut(s) 348, 736, 1050, 1149
Cac8I GCNNGC 4 cut(s) 226, 683, 914, 920
CfoI GCGC 3 cut(s) 80, 175, 918
Cfr10I RCCGGY 1 cut(s) 714
Cfr13I GGNCC 4 cut(s) 560, 575, 812, 1235
CseI GACGC 1 cut(s) 338
CsiI ACCWGGT 2 cut(s) 724, 889
Csp6I GTAC 4 cut(s) 200, 652, 794, 1059
CviAII CATG 9 cut(s) 72, 318, 431, 462, 689, 923, 1007, 1137, 1273
CviQI GTAC 4 cut(s) 200, 652, 794, 1059
DpnI GATC 4 cut(s) 836, 843, 1094, 1148
DpnII GATC 4 cut(s) 834, 841, 1092, 1146
DraIII CACNNNGTG 1 cut(s) 728
EaeI YGGCCR 3 cut(s) 3, 226, 882
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 317, 647
Eco47I GGWCC 1 cut(s) 1235
Eco72I CACGTG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 3 cut(s) 5, 724, 889
EcoT14I CCWWGG 2 cut(s) 317, 647
ErhI CCWWGG 2 cut(s) 317, 647
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 9 cut(s) 75, 321, 434, 465, 692, 926, 1010, 1140, 1276
FaqI GGGAC 2 cut(s) 298, 510
FatI CATG 9 cut(s) 71, 317, 430, 461, 688, 922, 1006, 1136, 1272
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 81, 303, 347, 363, 1223
FokI GGATG 2 cut(s) 770, 1102
Fsp4HI GCNGC 5 cut(s) 81, 303, 347, 363, 1223
FspBI CTAG 3 cut(s) 107, 194, 648
GlaI GCGC 3 cut(s) 79, 174, 917
GluI GCNGC 5 cut(s) 81, 303, 347, 363, 1223
GsuI CTGGAG 2 cut(s) 642, 760
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 6 cut(s) 5, 228, 561, 577, 814, 884
HapII CCGG 2 cut(s) 308, 715
HgaI GACGC 1 cut(s) 338
HhaI GCGC 3 cut(s) 80, 175, 918
Hin1II CATG 9 cut(s) 75, 321, 434, 465, 692, 926, 1010, 1140, 1276
Hin6I GCGC 3 cut(s) 78, 173, 916
HinP1I GCGC 3 cut(s) 78, 173, 916
HinfI GANTC 6 cut(s) 64, 103, 379, 513, 1037, 1127
HpaII CCGG 2 cut(s) 308, 715
HphI GGTGA 5 cut(s) 73, 508, 884, 888, 1072
Hpy166II GTNNAC 2 cut(s) 629, 896
Hpy188I TCNGA 4 cut(s) 69, 102, 454, 523
Hpy188III TCNNGA 6 cut(s) 107, 353, 413, 549, 866, 1150
Hpy8I GTNNAC 2 cut(s) 629, 896
HpyAV CCTTC 3 cut(s) 465, 651, 863
HpyCH4III ACNGT 1 cut(s) 829
HpyCH4IV ACGT 2 cut(s) 390, 805
HpyCH4V TGCA 5 cut(s) 305, 365, 398, 424, 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 299, 567
HpySE526I ACGT 2 cut(s) 390, 805
Hsp92II CATG 9 cut(s) 75, 321, 434, 465, 692, 926, 1010, 1140, 1276
HspAI GCGC 3 cut(s) 78, 173, 916
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 4 cut(s) 834, 841, 1092, 1146
LmnI GCTCC 5 cut(s) 310, 359, 661, 690, 733
Lsp1109I GCAGC 3 cut(s) 289, 349, 1234
LweI GCATC 1 cut(s) 318
MabI ACCWGGT 2 cut(s) 724, 889
MaeI CTAG 3 cut(s) 107, 194, 648
MaeII ACGT 2 cut(s) 390, 805
MaeIII GTNAC 4 cut(s) 208, 514, 978, 1199
MalI GATC 4 cut(s) 836, 843, 1094, 1148
MboI GATC 4 cut(s) 834, 841, 1092, 1146
MboII GAAGA 8 cut(s) 24, 27, 30, 36, 106, 120, 129, 1102
MhlI GDGCHC 2 cut(s) 738, 914
MlsI TGGCCA 3 cut(s) 5, 228, 884
MluCI AATT 5 cut(s) 445, 668, 900, 1026, 1286
MluNI TGGCCA 3 cut(s) 5, 228, 884
MlyI GAGTC 2 cut(s) 522, 1121
Mox20I TGGCCA 3 cut(s) 5, 228, 884
MscI TGGCCA 3 cut(s) 5, 228, 884
MseI TTAA 3 cut(s) 375, 1181, 1266
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 3 cut(s) 5, 228, 884
MspI CCGG 2 cut(s) 308, 715
MspR9I CCNGG 3 cut(s) 7, 726, 891
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 7, 726, 891
MvnI CGCG 3 cut(s) 80, 349, 916
MwoI GCNNNNNNNGC 3 cut(s) 221, 299, 567
NcoI CCATGG 1 cut(s) 317
NdeII GATC 4 cut(s) 834, 841, 1092, 1146
NlaIII CATG 9 cut(s) 75, 321, 434, 465, 692, 926, 1010, 1140, 1276
NlaIV GGNNCC 3 cut(s) 562, 686, 813
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 2 cut(s) 75, 1276
PciI ACATGT 2 cut(s) 71, 1272
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 4 cut(s) 64, 103, 379, 1037
PflFI GACNNNGTC 1 cut(s) 1138
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 5 cut(s) 82, 304, 348, 364, 1224
PleI GAGTC 2 cut(s) 521, 1121
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 2 cut(s) 521, 1121
Ppu21I YACGTR 2 cut(s) 391, 806
PscI ACATGT 2 cut(s) 71, 1272
PshAI GACNNNNGTC 1 cut(s) 194
Psp6I CCWGG 3 cut(s) 5, 724, 889
PspCI CACGTG 1 cut(s) 806
PspGI CCWGG 3 cut(s) 5, 724, 889
PspN4I GGNNCC 3 cut(s) 562, 686, 813
PspPI GGNCC 4 cut(s) 560, 575, 812, 1235
PsyI GACNNNGTC 1 cut(s) 1138
RsaI GTAC 4 cut(s) 201, 653, 795, 1060
RsaNI GTAC 4 cut(s) 200, 652, 794, 1059
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 375, 1181, 1266
SatI GCNGC 5 cut(s) 81, 303, 347, 363, 1223
Sau3AI GATC 4 cut(s) 834, 841, 1092, 1146
Sau96I GGNCC 4 cut(s) 560, 575, 812, 1235
SchI GAGTC 2 cut(s) 522, 1121
ScrFI CCNGG 3 cut(s) 7, 726, 891
SduI GDGCHC 2 cut(s) 738, 914
SexAI ACCWGGT 2 cut(s) 724, 889
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 1235
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 5 cut(s) 445, 668, 900, 1026, 1286
SsiI CCGC 3 cut(s) 80, 347, 1056
SspMI CTAG 3 cut(s) 107, 194, 648
StyD4I CCNGG 3 cut(s) 5, 724, 889
StyI CCWWGG 2 cut(s) 317, 647
TaaI ACNGT 1 cut(s) 829
TaiI ACGT 2 cut(s) 393, 808
TaqI TCGA 2 cut(s) 354, 1130
TasI AATT 5 cut(s) 445, 668, 900, 1026, 1286
TauI GCSGC 2 cut(s) 83, 349
TfiI GAWTC 4 cut(s) 64, 103, 379, 1037
Tru1I TTAA 3 cut(s) 375, 1181, 1266
Tru9I TTAA 3 cut(s) 375, 1181, 1266
TscAI CASTG 4 cut(s) 348, 743, 1057, 1149
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 3 cut(s) 302, 362, 1222
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 5 cut(s) 30, 129, 579, 975, 980
TspRI CASTG 4 cut(s) 348, 743, 1057, 1149
Tth111I GACNNNGTC 1 cut(s) 1138
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 1235
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 2 cut(s) 75, 1276
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmaJI CCTAGG 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 628
XspI CTAG 3 cut(s) 107, 194, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.