Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013906

Physical Location & Seq

Genomic Coordinates Forward (+)

81779308 .. 81782577

Gene Structure 3270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G054070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCAGGCTTACCCAAAATCACACCACTTCTTCTTCTTCTTCAAAATTGAAATGGGTGTTTCTGACATGTTGCACGGCTCTGCTTGGAGCGGCTCTAATTGTAGATTTCTTCTGGGCTTCATCTTCTTATTCGTCCTCTGCGTATTCGATTATTGGTTCTGGTTTGGAGCTCCAGAAAACTCCGACCCTTGTGCTACCAAATGCCACAGTCAGCAATGCTGGCCAGAAAGAAGTTTTGGGAGACAAAAATGAACGTGTTCCTGAGAGATTACTGTCTGGGACGTTTGCTGATATAGCTGCACCTGAGCTACCATGGGAGGAGATGCCACAAGCACCTGTACCTCGTCTCGATGGAGCTGCAATACAGATCAAGAATCTATTTTATGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATGTATTCAATTTCTCCGACAATACCTGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTGGCCTCTGATGGGAGATACATATATGTGATATCAGGACAGTATGGTCCCCAATGCAGAGGGCCTACAGCTCGTTCATTTGTGTTGGACACCGAGACAAAGAAATGGAGTAGTATACCCCCATTACCTTCTCCTAGGTATGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGCCATACGCCTGGTGTGGAGCACTGGAGTATTGCTGTGAACGGTGGTAAAGCATTGGAGGAAAAGTGGCGGGAAGAAGTACCTATTCCACGTGGAGGGCCACATAGGGCTTGTGTTGTAATCAATGATCGCCTCTTTGTTATTGGCGGTCAAGAGGGTGATTTTATGGCCAAGCCTGGTTCTCCAATTTTCAAATGCTCACGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

321

Amino Acids

35.41

Weight (kDa)

8.84

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	120 - 293	7e-16	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	126 - 292	2.8e-08	Attractin/LZTR1 beta-propeller
Beta-prop_FBX42	PF13415	168 - 291	1.4e-06	FBX42, beta-propeller domain
Kelch_FKB95	PF25210	169 - 241	7e-08	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27220
fragaria_vesca	FvH4_6g52971
malus_domestica	MD17G1015900.v1.1
prunus_persica	Prupe.3G302200_v2.0.a1
pyrus_communis	pycom17g01280
rosa_chinensis	RchiOBHm_Chr2g0174691
rosa_laevigata	RLG00000022286
rosa_multiflora	Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077930
rosa_rugosa	Rorug02G0578800 Rorug02G0578900
rosa_samantha	Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana	Rw2G054070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	555
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccBSI	CCGCTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	915
AciI	CCGC	4 cut(s)	92, 712, 781, 858
AcoI	YGGCCR	3 cut(s)	3, 223, 879
AcvI	CACGTG	1 cut(s)	803
AfaI	GTAC	2 cut(s)	342, 792
AfiI	CCNNNNNNNGG	3 cut(s)	522, 691, 806
AflIII	ACRYGT	2 cut(s)	68, 256
AgsI	TTSAA	4 cut(s)	45, 52, 442, 904
AjnI	CCWGG	4 cut(s)	5, 458, 721, 886
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	172, 299, 310, 359, 581
AluI	AGCT	5 cut(s)	172, 299, 310, 359, 581
Alw21I	GWGCWC	2 cut(s)	174, 735
Alw26I	GTCTC	3 cut(s)	237, 353, 599
AoxI	GGCC	6 cut(s)	3, 223, 513, 572, 809, 879
ApeKI	GCWGC	2 cut(s)	299, 359
Asp700I	GAANNNNTTC	1 cut(s)	258
AspA2I	CCTAGG	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	917
AspS9I	GGNCC	3 cut(s)	557, 572, 809
AsuHPI	GGTGA	1 cut(s)	881
AvaII	GGWCC	1 cut(s)	557
AvrII	CCTAGG	1 cut(s)	644
BalI	TGGCCA	3 cut(s)	5, 225, 881
BanII	GRGCYC	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	803
Bbv12I	GWGCWC	2 cut(s)	174, 735
BbvI	GCAGC	2 cut(s)	286, 346
BccI	CCATC	4 cut(s)	347, 484, 515, 685
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 341, 375
BciT130I	CCWGG	4 cut(s)	7, 460, 723, 888
BcoDI	GTCTC	3 cut(s)	237, 353, 599
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	3 cut(s)	93, 300, 360
BlnI	CCTAGG	1 cut(s)	644
BlsI	GCNGC	3 cut(s)	94, 301, 361
Bme1390I	CCNGG	4 cut(s)	7, 460, 723, 888
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	3 cut(s)	557, 572, 809
BmiI	GGNNCC	2 cut(s)	559, 683
BmrFI	CCNGG	4 cut(s)	7, 460, 723, 888
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	666, 698
BpmI	CTGGAG	3 cut(s)	158, 639, 757
Bpu10I	CCTNAGC	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	803
BsaJI	CCNNGG	3 cut(s)	314, 459, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	3 cut(s)	522, 691, 806
Bse1I	ACTGG	1 cut(s)	740
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	4 cut(s)	7, 460, 723, 888
BseDI	CCNNGG	3 cut(s)	314, 459, 644
BseLI	CCNNNNNNNGG	3 cut(s)	522, 691, 806
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	255, 297
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	286, 346
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	6 cut(s)	5, 225, 515, 574, 811, 881
BsiHKAI	GWGCWC	2 cut(s)	174, 735
BslFI	GGGAC	3 cut(s)	295, 507, 543
BslI	CCNNNNNNNGG	3 cut(s)	522, 691, 806
BsmAI	GTCTC	3 cut(s)	237, 353, 599
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	3 cut(s)	295, 507, 543
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	6 cut(s)	5, 225, 515, 574, 811, 881
Bsp1286I	GDGCHC	2 cut(s)	174, 735
Bsp143I	GATC	2 cut(s)	369, 838
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	92, 712, 781, 858
BspANI	GGCC	6 cut(s)	5, 225, 515, 574, 811, 881
BspCNI	CTCAG	2 cut(s)	256, 298
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	559, 683
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	3 cut(s)	314, 459, 644
BssMI	GATC	2 cut(s)	369, 838
BssNAI	GTATAC	1 cut(s)	626
BssT1I	CCWWGG	2 cut(s)	314, 644
Bst1107I	GTATAC	1 cut(s)	626
Bst2UI	CCWGG	4 cut(s)	7, 460, 723, 888
Bst4CI	ACNGT	4 cut(s)	211, 276, 552, 755
BstBAI	YACGTR	1 cut(s)	803
BstC8I	GCNNGC	3 cut(s)	223, 680, 919
BstDEI	CTNAG	2 cut(s)	264, 306
BstDSI	CCRYGG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	915
BstHHI	GCGC	1 cut(s)	917
BstKTI	GATC	2 cut(s)	372, 841
BstMAI	GTCTC	3 cut(s)	237, 353, 599
BstMBI	GATC	2 cut(s)	369, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 296
BstNI	CCWGG	4 cut(s)	7, 460, 723, 888
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	4 cut(s)	5, 458, 721, 886
BstSFI	CTRYAG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	2 cut(s)	286, 346
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstZ17I	GTATAC	1 cut(s)	626
BsuRI	GGCC	6 cut(s)	5, 225, 515, 574, 811, 881
BtgI	CCRYGG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	3 cut(s)	223, 680, 919
CfoI	GCGC	1 cut(s)	917
Cfr13I	GGNCC	3 cut(s)	557, 572, 809
Csp6I	GTAC	2 cut(s)	341, 791
CviAII	CATG	5 cut(s)	69, 315, 428, 686, 922
CviQI	GTAC	2 cut(s)	341, 791
DdeI	CTNAG	2 cut(s)	264, 306
DpnI	GATC	2 cut(s)	371, 840
DpnII	GATC	2 cut(s)	369, 838
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	3 cut(s)	3, 223, 879
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	314, 644
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	172
Eco72I	CACGTG	1 cut(s)	803
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRII	CCWGG	4 cut(s)	5, 458, 721, 886
EcoRV	GATATC	1 cut(s)	543
EcoT14I	CCWWGG	2 cut(s)	314, 644
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	314, 644
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	5 cut(s)	72, 318, 431, 689, 925
FaqI	GGGAC	3 cut(s)	295, 507, 543
FatI	CATG	5 cut(s)	68, 314, 427, 685, 921
FauI	CCCGC	1 cut(s)	774
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	3 cut(s)	93, 300, 360
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	93, 300, 360
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	916
GluI	GCNGC	3 cut(s)	93, 300, 360
GsuI	CTGGAG	3 cut(s)	158, 639, 757
HaeIII	GGCC	6 cut(s)	5, 225, 515, 574, 811, 881
HhaI	GCGC	1 cut(s)	917
Hin1II	CATG	5 cut(s)	72, 318, 431, 689, 925
Hin6I	GCGC	1 cut(s)	915
HinP1I	GCGC	1 cut(s)	915
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	2 cut(s)	626, 751
Hpy188I	TCNGA	4 cut(s)	66, 186, 451, 520
Hpy188III	TCNNGA	7 cut(s)	175, 263, 350, 373, 410, 546, 863
Hpy8I	GTNNAC	2 cut(s)	626, 751
HpyAV	CCTTC	2 cut(s)	462, 648
HpyCH4III	ACNGT	4 cut(s)	211, 276, 552, 755
HpyCH4IV	ACGT	3 cut(s)	256, 284, 802
HpyCH4V	TGCA	6 cut(s)	75, 302, 362, 395, 421, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 296
HpyF3I	CTNAG	2 cut(s)	264, 306
HpySE526I	ACGT	3 cut(s)	256, 284, 802
Hsp92II	CATG	5 cut(s)	72, 318, 431, 689, 925
HspAI	GCGC	1 cut(s)	915
Kzo9I	GATC	2 cut(s)	369, 838
LmnI	GCTCC	7 cut(s)	89, 169, 177, 356, 658, 687, 730
Lsp1109I	GCAGC	2 cut(s)	286, 346
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	3 cut(s)	256, 284, 802
MalI	GATC	2 cut(s)	371, 840
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	2 cut(s)	369, 838
MboII	GAAGA	7 cut(s)	24, 27, 30, 33, 103, 117, 797
MhlI	GDGCHC	2 cut(s)	174, 735
MlsI	TGGCCA	3 cut(s)	5, 225, 881
MluCI	AATT	5 cut(s)	47, 99, 442, 665, 897
MluNI	TGGCCA	3 cut(s)	5, 225, 881
MmeI	TCCRAC	3 cut(s)	209, 474, 576
Mox20I	TGGCCA	3 cut(s)	5, 225, 881
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	3 cut(s)	5, 225, 881
MslI	CAYNNNNRTG	3 cut(s)	426, 432, 536
Msp20I	TGGCCA	3 cut(s)	5, 225, 881
MspR9I	CCNGG	4 cut(s)	7, 460, 723, 888
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	4 cut(s)	7, 460, 723, 888
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	2 cut(s)	222, 296
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	369, 838
NlaIII	CATG	5 cut(s)	72, 318, 431, 689, 925
NlaIV	GGNNCC	2 cut(s)	559, 683
NspI	RCATGY	1 cut(s)	72
PciI	ACATGT	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	3 cut(s)	94, 301, 361
PmaCI	CACGTG	1 cut(s)	803
PmlI	CACGTG	1 cut(s)	803
Ppu21I	YACGTR	1 cut(s)	803
PscI	ACATGT	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	4 cut(s)	5, 458, 721, 886
PspCI	CACGTG	1 cut(s)	803
PspGI	CCWGG	4 cut(s)	5, 458, 721, 886
PspN4I	GGNNCC	2 cut(s)	559, 683
PspPI	GGNCC	3 cut(s)	557, 572, 809
RsaI	GTAC	2 cut(s)	342, 792
RsaNI	GTAC	2 cut(s)	341, 791
RseI	CAYNNNNRTG	3 cut(s)	426, 432, 536
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	3 cut(s)	93, 300, 360
Sau3AI	GATC	2 cut(s)	369, 838
Sau96I	GGNCC	3 cut(s)	557, 572, 809
ScrFI	CCNGG	4 cut(s)	7, 460, 723, 888
SduI	GDGCHC	2 cut(s)	174, 735
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	3 cut(s)	426, 432, 536
Sse9I	AATT	5 cut(s)	47, 99, 442, 665, 897
SsiI	CCGC	4 cut(s)	92, 712, 781, 858
SspMI	CTAG	1 cut(s)	645
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	4 cut(s)	5, 458, 721, 886
StyI	CCWWGG	2 cut(s)	314, 644
TaaI	ACNGT	4 cut(s)	211, 276, 552, 755
TaiI	ACGT	3 cut(s)	259, 287, 805
TaqI	TCGA	2 cut(s)	149, 351
TasI	AATT	5 cut(s)	47, 99, 442, 665, 897
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	376
TscAI	CASTG	1 cut(s)	740
TseI	GCWGC	2 cut(s)	299, 359
TspDTI	ATGAA	3 cut(s)	111, 267, 576
TspRI	CASTG	1 cut(s)	740
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	557
XceI	RCATGY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XmaJI	CCTAGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.