RLG00000022286

Kelch repeat-containing protein At3g27220-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
82244049 .. 82247099
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022286

Sequence Viewer

Length: 1305 bp
ATGGCCAGGCTTACCCAAAATCACACCACTTCTTCTTCTTCTGCTTCTTCTTCAAAATTGAAATGGGTGTTTCTGACATGTTGCATGGCTCTGCTTGGAGCGGCTCTAATTGTAGATTTCTTCTGGGCTTCATCTTCTTATTCTTCCTCTGCGTATTCGATTATTGGTTCTAGTTTGGAGCTCCAGAAAACTCCGACCCTTGTGGTACCAAATGCCACAGTCAACAATGCTGGCCAGAAAGAAGTTTTGGGAGACAAAAATGAACGTGTTCCTGCGAGATTACTGTCTGGAACGTTTGCTGATATAGCTGCACCTGAGCTACCATGGGAGGAGATGCCACCAGCACCTGTACCTCGTCTCGATGGTGCTGCAATACAGATCAAGAATCTATTTTATGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATGTATTCAATTTCTCCGACAATACATGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTGGCCTCTGATGGGAGATACATATATGTGATATCAGGACAGTATGGTCCCCAATGCAGAGGACCTACAGCTCGTTCATTTGTGTTGGACACCGAGACAAAGAAATGGAGTAGTATACCCCCATTGCCTTCTCCTAGGTATGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGCCATACGCTTGGTGTGGAGCACTGGAGTATTGCTGTGAACGGTGGTAAAGCATTGGAGGAAAAGTGGCGGGAAGAAGTACCTATTCCACGTGGAGGGCCACATAGGGCTTGTGTTGTAATCAATGATCGCCTCTTTGTTATTGGCGGTCAAGAGGGTGATTTTATGGCCAAGCCTGGTTCACCAATTTTCAAATGCTCGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGTTGAAATGAAATGGAAAGTGTTACCTCCTATGCCGAAACCAAACTCTCACGTAGAGTGTGCTTGGGTAGTTCTCAACAATTCAATTATCATCACTGGCGGTACAACAGAAAAGAACCCAATCACCAAAAGGATGATCCTCGTCGGGGAGATCTTCCAATTTCATTTGGACTCGATGACATGGTCAGTGATTGGGAGGCTTCCATACCGAGTAAAAACCACATTAACTGCTTTTTGGGATGGCTACTTGTATTTTACATCCGGGCAGCGAGACAGAGGACCAGATAATCCACAGCCAAGACAGGTGGTTAAAGATATGTTTAGGACCAAATTGAGCTTGTAG

Protein Analysis

435

Amino Acids

48.37

Weight (kDa)

9.07

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 123 - 355 3.5e-20 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 128 - 294 5.7e-08 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 171 - 293 6.1e-06 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 172 - 242 2.5e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27220
fragaria_vesca FvH4_6g52971
malus_domestica MD17G1015900.v1.1
prunus_persica Prupe.3G302200_v2.0.a1
pyrus_communis pycom17g01280
rosa_chinensis RchiOBHm_Chr2g0174691
rosa_laevigata RLG00000022286
rosa_multiflora Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii Rroxscaffold_2G00077930
rosa_rugosa Rorug02G0578800 Rorug02G0578900
rosa_samantha Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana Rw2G054070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 564
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 634
AccII CGCG 1 cut(s) 922
AciI CCGC 5 cut(s) 101, 721, 790, 867, 1062
AclI AACGTT 1 cut(s) 293
AclWI GGATC 1 cut(s) 1093
AcoI YGGCCR 3 cut(s) 3, 232, 888
AcvI CACGTG 1 cut(s) 812
AfaI GTAC 4 cut(s) 207, 351, 801, 1066
AfiI CCNNNNNNNGG 4 cut(s) 531, 700, 815, 1108
AflIII ACRYGT 2 cut(s) 77, 265
AgsI TTSAA 6 cut(s) 54, 61, 451, 913, 968, 1047
AjnI CCWGG 2 cut(s) 5, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 5 cut(s) 181, 308, 319, 590, 1299
AluI AGCT 5 cut(s) 181, 308, 319, 590, 1299
Alw21I GWGCWC 2 cut(s) 183, 744
Alw26I GTCTC 4 cut(s) 246, 362, 608, 1227
AlwI GGATC 1 cut(s) 1093
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 5 cut(s) 3, 232, 522, 818, 888
ApeKI GCWGC 3 cut(s) 308, 368, 1228
Asp700I GAANNNNTTC 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 205
AspA2I CCTAGG 1 cut(s) 653
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 5 cut(s) 566, 581, 818, 1241, 1287
AsuC2I CCSGG 1 cut(s) 1225
AsuHPI GGTGA 3 cut(s) 890, 894, 1078
AvaII GGWCC 4 cut(s) 566, 581, 1241, 1287
AvrII CCTAGG 1 cut(s) 653
BalI TGGCCA 3 cut(s) 5, 234, 890
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 183
BbrPI CACGTG 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 183, 744
BbvI GCAGC 3 cut(s) 295, 355, 1240
BccI CCATC 5 cut(s) 356, 493, 524, 694, 1196
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 2 cut(s) 7, 897
BcnI CCSGG 1 cut(s) 1225
BcoDI GTCTC 4 cut(s) 246, 362, 608, 1227
BfaI CTAG 2 cut(s) 171, 654
BfmI CTRYAG 1 cut(s) 585
BglII AGATCT 1 cut(s) 1113
BisI GCNGC 4 cut(s) 102, 309, 369, 1229
BlnI CCTAGG 1 cut(s) 653
BlsI GCNGC 4 cut(s) 103, 310, 370, 1230
Bme1390I CCNGG 3 cut(s) 7, 897, 1225
Bme18I GGWCC 4 cut(s) 566, 581, 1241, 1287
BmgT120I GGNCC 5 cut(s) 566, 581, 818, 1241, 1287
BmiI GGNNCC 3 cut(s) 207, 568, 692
BmrFI CCNGG 3 cut(s) 7, 897, 1225
BmsI GCATC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 675, 707
BpmI CTGGAG 3 cut(s) 167, 648, 766
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 1225
BsaAI YACGTR 2 cut(s) 812, 1015
BsaJI CCNNGG 2 cut(s) 323, 653
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bsc4I CCNNNNNNNGG 4 cut(s) 531, 700, 815, 1108
Bse1I ACTGG 2 cut(s) 749, 1063
Bse3DI GCAATG 1 cut(s) 641
BseBI CCWGG 2 cut(s) 7, 897
BseDI CCNNGG 2 cut(s) 323, 653
BseGI GGATG 3 cut(s) 1101, 1207, 1220
BseLI CCNNNNNNNGG 4 cut(s) 531, 700, 815, 1108
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 749, 1063
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 295, 355, 1240
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 922
BshFI GGCC 5 cut(s) 5, 234, 524, 820, 890
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 2 cut(s) 183, 744
BsiSI CCGG 1 cut(s) 1224
BslFI GGGAC 2 cut(s) 516, 552
BslI CCNNNNNNNGG 4 cut(s) 531, 700, 815, 1108
BsmAI GTCTC 4 cut(s) 246, 362, 608, 1227
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 516, 552
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 5 cut(s) 5, 234, 524, 820, 890
Bsp1286I GDGCHC 2 cut(s) 183, 744
Bsp143I GATC 4 cut(s) 378, 847, 1098, 1113
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 5 cut(s) 101, 721, 790, 867, 1062
BspANI GGCC 5 cut(s) 5, 234, 524, 820, 890
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 922
BspLI GGNNCC 3 cut(s) 207, 568, 692
BspPI GGATC 1 cut(s) 1093
BspT107I GGYRCC 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 2 cut(s) 749, 1063
BssECI CCNNGG 2 cut(s) 323, 653
BssMI GATC 4 cut(s) 378, 847, 1098, 1113
BssNAI GTATAC 1 cut(s) 635
BssT1I CCWWGG 2 cut(s) 323, 653
Bst1107I GTATAC 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 7, 897
Bst4CI ACNGT 4 cut(s) 220, 285, 561, 764
BstBAI YACGTR 2 cut(s) 812, 1015
BstC8I GCNNGC 4 cut(s) 232, 689, 920, 926
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 3 cut(s) 1101, 1207, 1220
BstFNI CGCG 1 cut(s) 922
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 4 cut(s) 381, 850, 1101, 1116
BstMAI GTCTC 4 cut(s) 246, 362, 608, 1227
BstMBI GATC 4 cut(s) 378, 847, 1098, 1113
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 7, 897
BstNSI RCATGY 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 5, 895, 1223
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 3 cut(s) 295, 355, 1240
BstX2I RGATCY 1 cut(s) 1113
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 1 cut(s) 1113
BstZ17I GTATAC 1 cut(s) 635
BsuRI GGCC 5 cut(s) 5, 234, 524, 820, 890
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 3 cut(s) 1101, 1207, 1220
BtsIMutI CAGTG 3 cut(s) 742, 1056, 1155
Cac8I GCNNGC 4 cut(s) 232, 689, 920, 926
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 924
Cfr13I GGNCC 5 cut(s) 566, 581, 818, 1241, 1287
Csp6I GTAC 4 cut(s) 206, 350, 800, 1065
CspCI CAANNNNNGTGG 2 cut(s) 1248, 1283
CviAII CATG 8 cut(s) 78, 85, 324, 437, 468, 695, 929, 1143
CviQI GTAC 4 cut(s) 206, 350, 800, 1065
DdeI CTNAG 1 cut(s) 315
DpnI GATC 4 cut(s) 380, 849, 1100, 1115
DpnII GATC 4 cut(s) 378, 847, 1098, 1113
DrdI GACNNNNNNGTC 1 cut(s) 564
DseDI GACNNNNNNGTC 1 cut(s) 564
EaeI YGGCCR 3 cut(s) 3, 232, 888
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 323, 653
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 4 cut(s) 566, 581, 1241, 1287
Eco53kI GAGCTC 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 2 cut(s) 5, 895
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 323, 653
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 2 cut(s) 323, 653
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 8 cut(s) 81, 88, 327, 440, 471, 698, 932, 1146
FaqI GGGAC 2 cut(s) 516, 552
FatI CATG 8 cut(s) 77, 84, 323, 436, 467, 694, 928, 1142
FauI CCCGC 1 cut(s) 783
FblI GTMKAC 1 cut(s) 634
Fnu4HI GCNGC 4 cut(s) 102, 309, 369, 1229
FokI GGATG 3 cut(s) 1108, 1207, 1214
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 102, 309, 369, 1229
FspBI CTAG 2 cut(s) 171, 654
GlaI GCGC 1 cut(s) 923
GluI GCNGC 4 cut(s) 102, 309, 369, 1229
GsuI CTGGAG 3 cut(s) 167, 648, 766
HaeIII GGCC 5 cut(s) 5, 234, 524, 820, 890
HapII CCGG 1 cut(s) 1224
HhaI GCGC 1 cut(s) 924
Hin1II CATG 8 cut(s) 81, 88, 327, 440, 471, 698, 932, 1146
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 385, 1133
HpaII CCGG 1 cut(s) 1224
HphI GGTGA 3 cut(s) 890, 894, 1078
Hpy166II GTNNAC 4 cut(s) 223, 635, 760, 902
Hpy188I TCNGA 4 cut(s) 75, 195, 460, 529
Hpy188III TCNNGA 7 cut(s) 184, 288, 359, 382, 419, 555, 872
Hpy8I GTNNAC 4 cut(s) 223, 635, 760, 902
Hpy99I CGWCG 1 cut(s) 1109
HpyAV CCTTC 2 cut(s) 471, 657
HpyCH4III ACNGT 4 cut(s) 220, 285, 561, 764
HpyCH4IV ACGT 4 cut(s) 265, 293, 811, 1014
HpyCH4V TGCA 6 cut(s) 84, 311, 371, 404, 430, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 4 cut(s) 265, 293, 811, 1014
Hsp92II CATG 8 cut(s) 81, 88, 327, 440, 471, 698, 932, 1146
HspAI GCGC 1 cut(s) 922
KpnI GGTACC 1 cut(s) 209
Kzo9I GATC 4 cut(s) 378, 847, 1098, 1113
LmnI GCTCC 6 cut(s) 98, 178, 186, 667, 696, 739
Lsp1109I GCAGC 3 cut(s) 295, 355, 1240
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 171, 654
MaeII ACGT 4 cut(s) 265, 293, 811, 1014
MaeIII GTNAC 1 cut(s) 984
MalI GATC 4 cut(s) 380, 849, 1100, 1115
MbiI CCGCTC 1 cut(s) 101
MboI GATC 4 cut(s) 378, 847, 1098, 1113
MflI RGATCY 1 cut(s) 1113
MhlI GDGCHC 2 cut(s) 183, 744
MlsI TGGCCA 3 cut(s) 5, 234, 890
MluCI AATT 9 cut(s) 56, 108, 451, 674, 906, 1042, 1047, 1121, 1292
MluNI TGGCCA 3 cut(s) 5, 234, 890
MlyI GAGTC 1 cut(s) 1127
MmeI TCCRAC 3 cut(s) 218, 483, 585
Mox20I TGGCCA 3 cut(s) 5, 234, 890
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 3 cut(s) 5, 234, 890
MseI TTAA 2 cut(s) 1187, 1272
MslI CAYNNNNRTG 3 cut(s) 435, 441, 545
Msp20I TGGCCA 3 cut(s) 5, 234, 890
MspI CCGG 1 cut(s) 1224
MspR9I CCNGG 3 cut(s) 7, 897, 1225
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 7, 897
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 1225
NcoI CCATGG 1 cut(s) 323
NdeII GATC 4 cut(s) 378, 847, 1098, 1113
NlaIII CATG 8 cut(s) 81, 88, 327, 440, 471, 698, 932, 1146
NlaIV GGNNCC 3 cut(s) 207, 568, 692
NspI RCATGY 1 cut(s) 81
PciI ACATGT 1 cut(s) 77
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 385
PflFI GACNNNGTC 1 cut(s) 1144
PflMI CCANNNNNTGG 1 cut(s) 700
PkrI GCNGC 4 cut(s) 103, 310, 370, 1230
PleI GAGTC 1 cut(s) 1127
PmaCI CACGTG 1 cut(s) 812
PmlI CACGTG 1 cut(s) 812
PpsI GAGTC 1 cut(s) 1127
Ppu21I YACGTR 2 cut(s) 812, 1015
PpuMI RGGWCCY 1 cut(s) 581
PscI ACATGT 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 5, 895
PspCI CACGTG 1 cut(s) 812
PspGI CCWGG 2 cut(s) 5, 895
PspN4I GGNNCC 3 cut(s) 207, 568, 692
PspPI GGNCC 5 cut(s) 566, 581, 818, 1241, 1287
PspPPI RGGWCCY 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 1113
PsyI GACNNNGTC 1 cut(s) 1144
RsaI GTAC 4 cut(s) 207, 351, 801, 1066
RsaNI GTAC 4 cut(s) 206, 350, 800, 1065
RseI CAYNNNNRTG 3 cut(s) 435, 441, 545
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 1187, 1272
SatI GCNGC 4 cut(s) 102, 309, 369, 1229
Sau3AI GATC 4 cut(s) 378, 847, 1098, 1113
Sau96I GGNCC 5 cut(s) 566, 581, 818, 1241, 1287
SchI GAGTC 1 cut(s) 1127
ScrFI CCNGG 3 cut(s) 7, 897, 1225
SduI GDGCHC 2 cut(s) 183, 744
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 585
SinI GGWCC 4 cut(s) 566, 581, 1241, 1287
SmiMI CAYNNNNRTG 3 cut(s) 435, 441, 545
Sse9I AATT 9 cut(s) 56, 108, 451, 674, 906, 1042, 1047, 1121, 1292
SsiI CCGC 5 cut(s) 101, 721, 790, 867, 1062
SspMI CTAG 2 cut(s) 171, 654
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 5, 895, 1223
StyI CCWWGG 2 cut(s) 323, 653
TaaI ACNGT 4 cut(s) 220, 285, 561, 764
TaiI ACGT 4 cut(s) 268, 296, 814, 1017
TaqI TCGA 3 cut(s) 158, 360, 1136
TasI AATT 9 cut(s) 56, 108, 451, 674, 906, 1042, 1047, 1121, 1292
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 1187, 1272
Tru9I TTAA 2 cut(s) 1187, 1272
TscAI CASTG 3 cut(s) 749, 1063, 1155
TseI GCWGC 3 cut(s) 308, 368, 1228
TspDTI ATGAA 5 cut(s) 120, 276, 585, 986, 1115
TspRI CASTG 3 cut(s) 749, 1063, 1155
Tth111I GACNNNGTC 1 cut(s) 1144
Van91I CCANNNNNTGG 1 cut(s) 700
VpaK11BI GGWCC 4 cut(s) 566, 581, 1241, 1287
XceI RCATGY 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XmaJI CCTAGG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 634
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 2 cut(s) 171, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.