RchiOBHm_Chr2g0174691

Kelch repeat-containing protein At3g27220-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
87212588 .. 87215903
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54183

Sequence Viewer

Length: 1299 bp
ATGGCCAGGCTTACCCAAAATCACACCACTTCTTCTTCTTCTTCTTCAAAATTGAAATGGGTGTTTCTGACATGTTGCATGGCTCTGCTTGGAGCGGCTCTAATTGTAGATTTCTTCTGGGCTTCATCTTCTTATTCTTCCTCTGCGTATTCGATTATTGGTTCTGGTTTGGAGCTCCAGAAAACTCCGACCCTTGTGGTACCAAATGCCACAGTCAGCAATGCTGGCCAGAAAGAAGTTTTGGGAGACAAAAATGAACGTGTTCCTGAGAGATTACTGTCTGGGACGTTTGCTGATATAGCTGCACCTGAGCTACCATGGGAGGAGATGCCACAAGCACCTGTACCTCGTCTCGATGGAGCTGCAATACAGATCAAGAATCTATTTTATGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATGTATTCAATTTCTCCGACAATACCTGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTGGCCTCTGATGGGAGATACATATATGTGATATCAGGACAGTATGGTCCCCAATGCAGAGGGCCTACAGCTCGTTCATTTGTGTTGGACACCGAGACAAAGAAATGGAGTAGTATACCGCCATTACCTTCTCCTAGGTATGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGCCATACGCCTGGTGTGGAGCACTGGAGTATTGCTGTGAAAGGTGGTAAAGCATTGGAGGAAAAGTGGCGGGAAGAAGTACCTATTCCACGTGGAGGGCCACATAGGGCTTGTGTTGTAATCAATGATCGCCTCTTTGTTATTGGCGGTCAAGAGGGTGATTTTATGGCCAAGCCTGGTTCTCCAATTTTCAAATGCTCGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGATGAAATGAAATGGAAAGTGTTACCTCCTATGCCGAAACCAAACTCTCACGTAGAGTGTGCTTGGGTAGTTCTCAACAATTCAATTATCATCACTGGCGGTACAACAGAAAAGAACCCAATCACCAAAAGGATGATCCTCGTCGGGGAGATCTTCCAATTTCATTTGGACTCGATGACATGGTCAGTGATTGGGAGGCTTCCATACCGAGTAAAAACCACATTAACTGCTTTTTGGGATGGCTACTTGTATTTTACATCCGGGCAGCGAGACAGAGGACCAGATAATCCACAGCCAAGACAGGTGGTTAAAGATATGTTTAGGACCAAATTGAGCTTGTAG

Protein Analysis

432

Amino Acids

48.25

Weight (kDa)

8.96

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 121 - 353 5.4e-20 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 126 - 293 4.9e-08 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 169 - 292 3.3e-06 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 170 - 240 1.5e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27220
fragaria_vesca FvH4_6g52971
malus_domestica MD17G1015900.v1.1
prunus_persica Prupe.3G302200_v2.0.a1
pyrus_communis pycom17g01280
rosa_chinensis RchiOBHm_Chr2g0174691
rosa_laevigata RLG00000022286
rosa_multiflora Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii Rroxscaffold_2G00077930
rosa_rugosa Rorug02G0578800 Rorug02G0578900
rosa_samantha Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana Rw2G054070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 558
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 694
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 628
AccII CGCG 1 cut(s) 916
AciI CCGC 6 cut(s) 95, 632, 715, 784, 861, 1056
AclWI GGATC 1 cut(s) 1087
AcoI YGGCCR 3 cut(s) 3, 226, 882
AcvI CACGTG 1 cut(s) 806
AfaI GTAC 4 cut(s) 201, 345, 795, 1060
AfiI CCNNNNNNNGG 4 cut(s) 525, 694, 809, 1102
AflIII ACRYGT 2 cut(s) 71, 259
AgsI TTSAA 5 cut(s) 48, 55, 445, 907, 1041
AjnI CCWGG 4 cut(s) 5, 461, 724, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 6 cut(s) 175, 302, 313, 362, 584, 1293
AluI AGCT 6 cut(s) 175, 302, 313, 362, 584, 1293
Alw21I GWGCWC 2 cut(s) 177, 738
Alw26I GTCTC 4 cut(s) 240, 356, 602, 1221
AlwI GGATC 1 cut(s) 1087
AoxI GGCC 6 cut(s) 3, 226, 516, 575, 812, 882
ApeKI GCWGC 3 cut(s) 302, 362, 1222
Asp700I GAANNNNTTC 1 cut(s) 261
Asp718I GGTACC 1 cut(s) 199
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 5 cut(s) 560, 575, 812, 1235, 1281
AsuC2I CCSGG 1 cut(s) 1219
AsuHPI GGTGA 2 cut(s) 884, 1072
AvaII GGWCC 3 cut(s) 560, 1235, 1281
AvrII CCTAGG 1 cut(s) 647
BalI TGGCCA 3 cut(s) 5, 228, 884
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 177
BbrPI CACGTG 1 cut(s) 806
Bbv12I GWGCWC 2 cut(s) 177, 738
BbvI GCAGC 3 cut(s) 289, 349, 1234
BccI CCATC 5 cut(s) 350, 487, 518, 688, 1190
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 4 cut(s) 7, 463, 726, 891
BcnI CCSGG 1 cut(s) 1219
BcoDI GTCTC 4 cut(s) 240, 356, 602, 1221
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 579
BglII AGATCT 1 cut(s) 1107
BisI GCNGC 4 cut(s) 96, 303, 363, 1223
BlnI CCTAGG 1 cut(s) 647
BlsI GCNGC 4 cut(s) 97, 304, 364, 1224
Bme1390I CCNGG 5 cut(s) 7, 463, 726, 891, 1219
Bme18I GGWCC 3 cut(s) 560, 1235, 1281
BmgT120I GGNCC 5 cut(s) 560, 575, 812, 1235, 1281
BmiI GGNNCC 3 cut(s) 201, 562, 686
BmrFI CCNGG 5 cut(s) 7, 463, 726, 891, 1219
BmsI GCATC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 669, 701
BpmI CTGGAG 3 cut(s) 161, 642, 760
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 1219
BsaAI YACGTR 2 cut(s) 806, 1009
BsaJI CCNNGG 3 cut(s) 317, 462, 647
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 4 cut(s) 525, 694, 809, 1102
Bse1I ACTGG 2 cut(s) 743, 1057
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 4 cut(s) 7, 463, 726, 891
BseDI CCNNGG 3 cut(s) 317, 462, 647
BseGI GGATG 3 cut(s) 1095, 1201, 1214
BseLI CCNNNNNNNGG 4 cut(s) 525, 694, 809, 1102
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 258, 300
BseNI ACTGG 2 cut(s) 743, 1057
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 289, 349, 1234
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 916
BshFI GGCC 6 cut(s) 5, 228, 518, 577, 814, 884
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 177, 738
BsiSI CCGG 1 cut(s) 1218
BslFI GGGAC 3 cut(s) 298, 510, 546
BslI CCNNNNNNNGG 4 cut(s) 525, 694, 809, 1102
BsmAI GTCTC 4 cut(s) 240, 356, 602, 1221
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 3 cut(s) 298, 510, 546
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 6 cut(s) 5, 228, 518, 577, 814, 884
Bsp1286I GDGCHC 2 cut(s) 177, 738
Bsp143I GATC 4 cut(s) 372, 841, 1092, 1107
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 6 cut(s) 95, 632, 715, 784, 861, 1056
BspANI GGCC 6 cut(s) 5, 228, 518, 577, 814, 884
BspCNI CTCAG 2 cut(s) 259, 301
BspFNI CGCG 1 cut(s) 916
BspLI GGNNCC 3 cut(s) 201, 562, 686
BspPI GGATC 1 cut(s) 1087
BspT107I GGYRCC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 226
BsrI ACTGG 2 cut(s) 743, 1057
BssECI CCNNGG 3 cut(s) 317, 462, 647
BssMI GATC 4 cut(s) 372, 841, 1092, 1107
BssNAI GTATAC 1 cut(s) 629
BssT1I CCWWGG 2 cut(s) 317, 647
Bst1107I GTATAC 1 cut(s) 629
Bst2UI CCWGG 4 cut(s) 7, 463, 726, 891
Bst4CI ACNGT 3 cut(s) 214, 279, 555
BstBAI YACGTR 2 cut(s) 806, 1009
BstC8I GCNNGC 4 cut(s) 226, 683, 914, 920
BstDEI CTNAG 2 cut(s) 267, 309
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 3 cut(s) 1095, 1201, 1214
BstFNI CGCG 1 cut(s) 916
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 4 cut(s) 375, 844, 1095, 1110
BstMAI GTCTC 4 cut(s) 240, 356, 602, 1221
BstMBI GATC 4 cut(s) 372, 841, 1092, 1107
BstMWI GCNNNNNNNGC 2 cut(s) 225, 299
BstNI CCWGG 4 cut(s) 7, 463, 726, 891
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 5 cut(s) 5, 461, 724, 889, 1217
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 3 cut(s) 289, 349, 1234
BstX2I RGATCY 1 cut(s) 1107
BstXI CCANNNNNNTGG 1 cut(s) 725
BstYI RGATCY 1 cut(s) 1107
BstZ17I GTATAC 1 cut(s) 629
BsuRI GGCC 6 cut(s) 5, 228, 518, 577, 814, 884
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 3 cut(s) 1095, 1201, 1214
BtsIMutI CAGTG 3 cut(s) 736, 1050, 1149
Cac8I GCNNGC 4 cut(s) 226, 683, 914, 920
CfoI GCGC 1 cut(s) 918
Cfr13I GGNCC 5 cut(s) 560, 575, 812, 1235, 1281
Csp6I GTAC 4 cut(s) 200, 344, 794, 1059
CspCI CAANNNNNGTGG 2 cut(s) 1242, 1277
CviAII CATG 7 cut(s) 72, 79, 318, 431, 689, 923, 1137
CviQI GTAC 4 cut(s) 200, 344, 794, 1059
DdeI CTNAG 2 cut(s) 267, 309
DpnI GATC 4 cut(s) 374, 843, 1094, 1109
DpnII GATC 4 cut(s) 372, 841, 1092, 1107
DrdI GACNNNNNNGTC 1 cut(s) 558
DseDI GACNNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 3 cut(s) 3, 226, 882
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 317, 647
Eco24I GRGCYC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 3 cut(s) 560, 1235, 1281
Eco53kI GAGCTC 1 cut(s) 175
Eco72I CACGTG 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 4 cut(s) 5, 461, 724, 889
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 317, 647
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 317, 647
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 7 cut(s) 75, 82, 321, 434, 692, 926, 1140
FaqI GGGAC 3 cut(s) 298, 510, 546
FatI CATG 7 cut(s) 71, 78, 317, 430, 688, 922, 1136
FauI CCCGC 1 cut(s) 777
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 96, 303, 363, 1223
FokI GGATG 3 cut(s) 1102, 1201, 1208
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 4 cut(s) 96, 303, 363, 1223
FspBI CTAG 1 cut(s) 648
GlaI GCGC 1 cut(s) 917
GluI GCNGC 4 cut(s) 96, 303, 363, 1223
GsuI CTGGAG 3 cut(s) 161, 642, 760
HaeIII GGCC 6 cut(s) 5, 228, 518, 577, 814, 884
HapII CCGG 1 cut(s) 1218
HhaI GCGC 1 cut(s) 918
Hin1II CATG 7 cut(s) 75, 82, 321, 434, 692, 926, 1140
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HinfI GANTC 2 cut(s) 379, 1127
HpaII CCGG 1 cut(s) 1218
HphI GGTGA 2 cut(s) 884, 1072
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 4 cut(s) 69, 189, 454, 523
Hpy188III TCNNGA 7 cut(s) 178, 266, 353, 376, 413, 549, 866
Hpy8I GTNNAC 1 cut(s) 629
Hpy99I CGWCG 1 cut(s) 1103
HpyAV CCTTC 2 cut(s) 465, 651
HpyCH4III ACNGT 3 cut(s) 214, 279, 555
HpyCH4IV ACGT 4 cut(s) 259, 287, 805, 1008
HpyCH4V TGCA 6 cut(s) 78, 305, 365, 398, 424, 570
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 299
HpyF3I CTNAG 2 cut(s) 267, 309
HpySE526I ACGT 4 cut(s) 259, 287, 805, 1008
Hsp92II CATG 7 cut(s) 75, 82, 321, 434, 692, 926, 1140
HspAI GCGC 1 cut(s) 916
KpnI GGTACC 1 cut(s) 203
Kzo9I GATC 4 cut(s) 372, 841, 1092, 1107
LmnI GCTCC 7 cut(s) 92, 172, 180, 359, 661, 690, 733
Lsp1109I GCAGC 3 cut(s) 289, 349, 1234
LweI GCATC 1 cut(s) 318
MaeI CTAG 1 cut(s) 648
MaeII ACGT 4 cut(s) 259, 287, 805, 1008
MaeIII GTNAC 1 cut(s) 978
MalI GATC 4 cut(s) 374, 843, 1094, 1109
MbiI CCGCTC 1 cut(s) 95
MboI GATC 4 cut(s) 372, 841, 1092, 1107
MflI RGATCY 1 cut(s) 1107
MhlI GDGCHC 2 cut(s) 177, 738
MlsI TGGCCA 3 cut(s) 5, 228, 884
MluCI AATT 9 cut(s) 50, 102, 445, 668, 900, 1036, 1041, 1115, 1286
MluNI TGGCCA 3 cut(s) 5, 228, 884
MlyI GAGTC 1 cut(s) 1121
MmeI TCCRAC 3 cut(s) 212, 477, 579
Mox20I TGGCCA 3 cut(s) 5, 228, 884
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 3 cut(s) 5, 228, 884
MseI TTAA 2 cut(s) 1181, 1266
MslI CAYNNNNRTG 3 cut(s) 429, 435, 539
Msp20I TGGCCA 3 cut(s) 5, 228, 884
MspI CCGG 1 cut(s) 1218
MspR9I CCNGG 5 cut(s) 7, 463, 726, 891, 1219
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 4 cut(s) 7, 463, 726, 891
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 2 cut(s) 225, 299
NciI CCSGG 1 cut(s) 1219
NcoI CCATGG 1 cut(s) 317
NdeII GATC 4 cut(s) 372, 841, 1092, 1107
NlaIII CATG 7 cut(s) 75, 82, 321, 434, 692, 926, 1140
NlaIV GGNNCC 3 cut(s) 201, 562, 686
NspI RCATGY 1 cut(s) 75
PciI ACATGT 1 cut(s) 71
PctI GAATGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 379
PflFI GACNNNGTC 1 cut(s) 1138
PflMI CCANNNNNTGG 1 cut(s) 694
PkrI GCNGC 4 cut(s) 97, 304, 364, 1224
PleI GAGTC 1 cut(s) 1121
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 1 cut(s) 1121
Ppu21I YACGTR 2 cut(s) 806, 1009
PscI ACATGT 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 4 cut(s) 5, 461, 724, 889
PspCI CACGTG 1 cut(s) 806
PspGI CCWGG 4 cut(s) 5, 461, 724, 889
PspN4I GGNNCC 3 cut(s) 201, 562, 686
PspPI GGNCC 5 cut(s) 560, 575, 812, 1235, 1281
PsuI RGATCY 1 cut(s) 1107
PsyI GACNNNGTC 1 cut(s) 1138
RsaI GTAC 4 cut(s) 201, 345, 795, 1060
RsaNI GTAC 4 cut(s) 200, 344, 794, 1059
RseI CAYNNNNRTG 3 cut(s) 429, 435, 539
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 1181, 1266
SatI GCNGC 4 cut(s) 96, 303, 363, 1223
Sau3AI GATC 4 cut(s) 372, 841, 1092, 1107
Sau96I GGNCC 5 cut(s) 560, 575, 812, 1235, 1281
SchI GAGTC 1 cut(s) 1121
ScrFI CCNGG 5 cut(s) 7, 463, 726, 891, 1219
SduI GDGCHC 2 cut(s) 177, 738
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 3 cut(s) 560, 1235, 1281
SmiMI CAYNNNNRTG 3 cut(s) 429, 435, 539
Sse9I AATT 9 cut(s) 50, 102, 445, 668, 900, 1036, 1041, 1115, 1286
SsiI CCGC 6 cut(s) 95, 632, 715, 784, 861, 1056
SspMI CTAG 1 cut(s) 648
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 5 cut(s) 5, 461, 724, 889, 1217
StyI CCWWGG 2 cut(s) 317, 647
TaaI ACNGT 3 cut(s) 214, 279, 555
TaiI ACGT 4 cut(s) 262, 290, 808, 1011
TaqI TCGA 3 cut(s) 152, 354, 1130
TasI AATT 9 cut(s) 50, 102, 445, 668, 900, 1036, 1041, 1115, 1286
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 1181, 1266
Tru9I TTAA 2 cut(s) 1181, 1266
TscAI CASTG 3 cut(s) 743, 1057, 1149
TseI GCWGC 3 cut(s) 302, 362, 1222
TspDTI ATGAA 6 cut(s) 114, 270, 579, 975, 980, 1109
TspRI CASTG 3 cut(s) 743, 1057, 1149
Tth111I GACNNNGTC 1 cut(s) 1138
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 3 cut(s) 560, 1235, 1281
XceI RCATGY 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XmaJI CCTAGG 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.