Rh2DG684600

Kelch repeat-containing protein At3g27220-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
90330278 .. 90334648
4371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG684600.1

Sequence Viewer

Length: 1215 bp
ATGGACTCACAGTCGGACGGCGACGAGCCTCTGGTGTCGGAGAATCAAAGGAGCTGCCGGAGCTCGGAGATCCAAATGAAGACGAAGGAGGAGGAGAAAACTCCGACCCTTGTGGTACCAAATGCCACAGTCAACAATGCTGGCCAGAAAGAAGTTTTGGGAGACAAAAATGAACGTGTTCCTGAGAGATTACTGTCTGGGACGTTTGCTGATATAGCTGCACCTGAGCTACCATGGGAGGAGATGCCACCAGCACCTGTACCTCGTCTCGATGGAGCTGCAATACAGATCAAGAATCTATTTTATGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATGTATTCAATTTCTCCGACAATACCTGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTGGCCTCTGATGGGAGATACATATATGTGATATCAGGACAGTATGGTCCCCAATGCAGAGGGCCTACAGCTCGTTCATTTGTGTTGGACACCGAGACAAAGAAATGGAGTAGTATACCCCCATTACCTTCTCCTAGGTATGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGCCATACGCCTGGTGTGGAGCACTGGAGTATTGCTGTGAACGGTGGTAAAGCATTGGAGGAAAAGTGGCGGGAAGAAGTACCTATTCCACGTGGAGGGCCACATAGGGCTTGTGTTGTAATCAATGATCGCCTCTTTGTTATTGGCGGTCAAGAGGGTGATTTTATGGCCAAGCCCGGTTCTCCAATTTTCAAATGCTCGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGATGAAATGAAATGGAAAGTGTTACCTCCTATGCCGAAACCAAACTCTCACGTAGAGTGTGCTTGGGTAGTTCTCAACAATTCAATTATCATCACTGGCGGTACAACAGAAAAGAACCCAATCACCAAAAGGATGATCCTCGTCGGGGAGATCTTCCAATTTCATTTGGACTCAATGACATGGTCAGTGATTGGGAGGCTTCCATACCGAGTAAAAACCACATTAACTGCTTTTTGGGATGGCTACTTGTATTTTACATCCGGGCAGCGAGACAGAGGACCAGATAATCCACAGCCAAGACAGGTGGTTAAAGATATGTTTAGGACCAAATTGAGCTTGTAG

Protein Analysis

404

Amino Acids

45.45

Weight (kDa)

7.18

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 93 - 325 5.1e-20 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 98 - 265 4.1e-08 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 141 - 264 2.6e-06 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 142 - 214 1.1e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27220
fragaria_vesca FvH4_6g52971
malus_domestica MD17G1015900.v1.1
prunus_persica Prupe.3G302200_v2.0.a1
pyrus_communis pycom17g01280
rosa_chinensis RchiOBHm_Chr2g0174691
rosa_laevigata RLG00000022286
rosa_multiflora Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii Rroxscaffold_2G00077930
rosa_rugosa Rorug02G0578800 Rorug02G0578900
rosa_samantha Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana Rw2G054070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 474
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 610
AccI GTMKAC 1 cut(s) 544
AccII CGCG 1 cut(s) 832
AciI CCGC 4 cut(s) 631, 700, 777, 972
AclWI GGATC 2 cut(s) 64, 1003
AcoI YGGCCR 2 cut(s) 142, 798
AcvI CACGTG 1 cut(s) 722
AfaI GTAC 4 cut(s) 117, 261, 711, 976
AfiI CCNNNNNNNGG 5 cut(s) 64, 441, 610, 725, 1018
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 3 cut(s) 361, 823, 957
AhdI GACNNNNNGTC 1 cut(s) 10
AjnI CCWGG 2 cut(s) 377, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 7 cut(s) 54, 63, 218, 229, 278, 500, 1209
AluI AGCT 7 cut(s) 54, 63, 218, 229, 278, 500, 1209
Alw21I GWGCWC 2 cut(s) 65, 654
Alw26I GTCTC 4 cut(s) 156, 272, 518, 1137
AlwI GGATC 2 cut(s) 64, 1003
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 5 cut(s) 142, 432, 491, 728, 798
ApeKI GCWGC 4 cut(s) 54, 218, 278, 1138
Asp700I GAANNNNTTC 1 cut(s) 177
Asp718I GGTACC 1 cut(s) 115
AspA2I CCTAGG 1 cut(s) 563
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 5 cut(s) 476, 491, 728, 1151, 1197
AsuC2I CCSGG 2 cut(s) 807, 1135
AsuHPI GGTGA 2 cut(s) 800, 988
AvaII GGWCC 3 cut(s) 476, 1151, 1197
AvrII CCTAGG 1 cut(s) 563
BalI TGGCCA 2 cut(s) 144, 800
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 65
BbrPI CACGTG 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 65, 654
BbvI GCAGC 4 cut(s) 41, 205, 265, 1150
BccI CCATC 5 cut(s) 266, 403, 434, 604, 1106
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 379, 642
BcnI CCSGG 2 cut(s) 807, 1135
BcoDI GTCTC 4 cut(s) 156, 272, 518, 1137
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 495
BglII AGATCT 1 cut(s) 1023
BisI GCNGC 4 cut(s) 55, 219, 279, 1139
BlnI CCTAGG 1 cut(s) 563
BlsI GCNGC 4 cut(s) 56, 220, 280, 1140
Bme1390I CCNGG 4 cut(s) 379, 642, 807, 1135
Bme18I GGWCC 3 cut(s) 476, 1151, 1197
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 5 cut(s) 476, 491, 728, 1151, 1197
BmiI GGNNCC 3 cut(s) 117, 478, 602
BmrFI CCNGG 4 cut(s) 379, 642, 807, 1135
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 2 cut(s) 558, 676
Bpu10I CCTNAGC 1 cut(s) 225
BpuMI CCSGG 2 cut(s) 807, 1135
BsaAI YACGTR 2 cut(s) 722, 925
BsaJI CCNNGG 3 cut(s) 233, 378, 563
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 441, 610, 725, 1018
Bse1I ACTGG 2 cut(s) 659, 973
BseBI CCWGG 2 cut(s) 379, 642
BseDI CCNNGG 3 cut(s) 233, 378, 563
BseGI GGATG 3 cut(s) 1011, 1117, 1130
BseLI CCNNNNNNNGG 5 cut(s) 64, 441, 610, 725, 1018
BseMII CTCAG 2 cut(s) 174, 216
BseNI ACTGG 2 cut(s) 659, 973
BseRI GAGGAG 3 cut(s) 104, 107, 254
BseXI GCAGC 4 cut(s) 41, 205, 265, 1150
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 832
BshFI GGCC 5 cut(s) 144, 434, 493, 730, 800
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 65, 654
BsiSI CCGG 3 cut(s) 58, 807, 1134
BslFI GGGAC 3 cut(s) 214, 426, 462
BslI CCNNNNNNNGG 5 cut(s) 64, 441, 610, 725, 1018
BsmAI GTCTC 4 cut(s) 156, 272, 518, 1137
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 3 cut(s) 214, 426, 462
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 5 cut(s) 144, 434, 493, 730, 800
Bsp1286I GDGCHC 2 cut(s) 65, 654
Bsp143I GATC 5 cut(s) 69, 288, 757, 1008, 1023
Bsp19I CCATGG 1 cut(s) 233
BspACI CCGC 4 cut(s) 631, 700, 777, 972
BspANI GGCC 5 cut(s) 144, 434, 493, 730, 800
BspCNI CTCAG 2 cut(s) 175, 217
BspFNI CGCG 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 117, 478, 602
BspPI GGATC 2 cut(s) 64, 1003
BspT107I GGYRCC 1 cut(s) 115
BsrI ACTGG 2 cut(s) 659, 973
BssECI CCNNGG 3 cut(s) 233, 378, 563
BssMI GATC 5 cut(s) 69, 288, 757, 1008, 1023
BssNAI GTATAC 1 cut(s) 545
BssT1I CCWWGG 2 cut(s) 233, 563
Bst1107I GTATAC 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 379, 642
Bst4CI ACNGT 5 cut(s) 12, 130, 195, 471, 674
BstBAI YACGTR 2 cut(s) 722, 925
BstC8I GCNNGC 4 cut(s) 142, 599, 830, 836
BstDEI CTNAG 2 cut(s) 183, 225
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 3 cut(s) 1011, 1117, 1130
BstFNI CGCG 1 cut(s) 832
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 5 cut(s) 72, 291, 760, 1011, 1026
BstMAI GTCTC 4 cut(s) 156, 272, 518, 1137
BstMBI GATC 5 cut(s) 69, 288, 757, 1008, 1023
BstMWI GCNNNNNNNGC 2 cut(s) 60, 215
BstNI CCWGG 2 cut(s) 379, 642
BstSCI CCNGG 4 cut(s) 377, 640, 805, 1133
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 832
BstV1I GCAGC 4 cut(s) 41, 205, 265, 1150
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 69, 1023
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 69, 1023
BstZ17I GTATAC 1 cut(s) 545
BsuRI GGCC 5 cut(s) 144, 434, 493, 730, 800
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 3 cut(s) 1011, 1117, 1130
BtsIMutI CAGTG 3 cut(s) 652, 966, 1065
Cac8I GCNNGC 4 cut(s) 142, 599, 830, 836
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 834
Cfr13I GGNCC 5 cut(s) 476, 491, 728, 1151, 1197
Csp6I GTAC 4 cut(s) 116, 260, 710, 975
CspCI CAANNNNNGTGG 2 cut(s) 1158, 1193
CviAII CATG 5 cut(s) 234, 347, 605, 839, 1053
CviQI GTAC 4 cut(s) 116, 260, 710, 975
DdeI CTNAG 2 cut(s) 183, 225
DpnI GATC 5 cut(s) 71, 290, 759, 1010, 1025
DpnII GATC 5 cut(s) 69, 288, 757, 1008, 1023
DrdI GACNNNNNNGTC 1 cut(s) 474
DriI GACNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 474
EaeI YGGCCR 2 cut(s) 142, 798
Eam1105I GACNNNNNGTC 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 233, 563
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 3 cut(s) 476, 1151, 1197
Eco53kI GAGCTC 1 cut(s) 63
Eco72I CACGTG 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 377, 640
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 2 cut(s) 233, 563
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 233, 563
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 5 cut(s) 237, 350, 608, 842, 1056
FaqI GGGAC 3 cut(s) 214, 426, 462
FatI CATG 5 cut(s) 233, 346, 604, 838, 1052
FauI CCCGC 1 cut(s) 693
FblI GTMKAC 1 cut(s) 544
Fnu4HI GCNGC 4 cut(s) 55, 219, 279, 1139
FokI GGATG 3 cut(s) 1018, 1117, 1124
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 4 cut(s) 55, 219, 279, 1139
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 833
GluI GCNGC 4 cut(s) 55, 219, 279, 1139
GsuI CTGGAG 2 cut(s) 558, 676
HaeIII GGCC 5 cut(s) 144, 434, 493, 730, 800
HapII CCGG 3 cut(s) 58, 807, 1134
HhaI GCGC 1 cut(s) 834
Hin1II CATG 5 cut(s) 237, 350, 608, 842, 1056
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 5, 43, 295, 1043
HpaII CCGG 3 cut(s) 58, 807, 1134
HphI GGTGA 2 cut(s) 800, 988
Hpy166II GTNNAC 3 cut(s) 133, 545, 670
Hpy188I TCNGA 6 cut(s) 16, 40, 67, 105, 370, 439
Hpy188III TCNNGA 6 cut(s) 182, 269, 292, 329, 465, 782
Hpy8I GTNNAC 3 cut(s) 133, 545, 670
Hpy99I CGWCG 2 cut(s) 26, 1019
HpyAV CCTTC 3 cut(s) 79, 381, 567
HpyCH4III ACNGT 5 cut(s) 12, 130, 195, 471, 674
HpyCH4IV ACGT 4 cut(s) 175, 203, 721, 924
HpyCH4V TGCA 5 cut(s) 221, 281, 314, 340, 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 215
HpyF3I CTNAG 2 cut(s) 183, 225
HpySE526I ACGT 4 cut(s) 175, 203, 721, 924
Hsp92II CATG 5 cut(s) 237, 350, 608, 842, 1056
HspAI GCGC 1 cut(s) 832
KpnI GGTACC 1 cut(s) 119
Kzo9I GATC 5 cut(s) 69, 288, 757, 1008, 1023
LmnI GCTCC 6 cut(s) 51, 60, 275, 577, 606, 649
Lsp1109I GCAGC 4 cut(s) 41, 205, 265, 1150
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 564
MaeII ACGT 4 cut(s) 175, 203, 721, 924
MaeIII GTNAC 1 cut(s) 894
MalI GATC 5 cut(s) 71, 290, 759, 1010, 1025
MboI GATC 5 cut(s) 69, 288, 757, 1008, 1023
MboII GAAGA 3 cut(s) 91, 716, 1018
MflI RGATCY 2 cut(s) 69, 1023
MhlI GDGCHC 2 cut(s) 65, 654
MlsI TGGCCA 2 cut(s) 144, 800
MluCI AATT 7 cut(s) 361, 584, 816, 952, 957, 1031, 1202
MluNI TGGCCA 2 cut(s) 144, 800
MlyI GAGTC 1 cut(s) 1037
MmeI TCCRAC 4 cut(s) 18, 128, 393, 495
Mox20I TGGCCA 2 cut(s) 144, 800
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 2 cut(s) 144, 800
MseI TTAA 2 cut(s) 1097, 1182
MslI CAYNNNNRTG 3 cut(s) 345, 351, 455
Msp20I TGGCCA 2 cut(s) 144, 800
MspI CCGG 3 cut(s) 58, 807, 1134
MspR9I CCNGG 4 cut(s) 379, 642, 807, 1135
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 2 cut(s) 379, 642
MvnI CGCG 1 cut(s) 832
MwoI GCNNNNNNNGC 2 cut(s) 60, 215
NciI CCSGG 2 cut(s) 807, 1135
NcoI CCATGG 1 cut(s) 233
NdeII GATC 5 cut(s) 69, 288, 757, 1008, 1023
NlaIII CATG 5 cut(s) 237, 350, 608, 842, 1056
NlaIV GGNNCC 3 cut(s) 117, 478, 602
PctI GAATGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 43, 295
PflFI GACNNNGTC 1 cut(s) 1054
PflMI CCANNNNNTGG 1 cut(s) 610
PkrI GCNGC 4 cut(s) 56, 220, 280, 1140
PleI GAGTC 1 cut(s) 1037
PmaCI CACGTG 1 cut(s) 722
PmlI CACGTG 1 cut(s) 722
PpsI GAGTC 1 cut(s) 1037
Ppu21I YACGTR 2 cut(s) 722, 925
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 377, 640
PspCI CACGTG 1 cut(s) 722
PspGI CCWGG 2 cut(s) 377, 640
PspN4I GGNNCC 3 cut(s) 117, 478, 602
PspPI GGNCC 5 cut(s) 476, 491, 728, 1151, 1197
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 69, 1023
PsyI GACNNNGTC 1 cut(s) 1054
RsaI GTAC 4 cut(s) 117, 261, 711, 976
RsaNI GTAC 4 cut(s) 116, 260, 710, 975
RseI CAYNNNNRTG 3 cut(s) 345, 351, 455
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 1097, 1182
SatI GCNGC 4 cut(s) 55, 219, 279, 1139
Sau3AI GATC 5 cut(s) 69, 288, 757, 1008, 1023
Sau96I GGNCC 5 cut(s) 476, 491, 728, 1151, 1197
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 4 cut(s) 379, 642, 807, 1135
SduI GDGCHC 2 cut(s) 65, 654
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 3 cut(s) 476, 1151, 1197
SmiMI CAYNNNNRTG 3 cut(s) 345, 351, 455
Sse9I AATT 7 cut(s) 361, 584, 816, 952, 957, 1031, 1202
SsiI CCGC 4 cut(s) 631, 700, 777, 972
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 377, 640, 805, 1133
StyI CCWWGG 2 cut(s) 233, 563
TaaI ACNGT 5 cut(s) 12, 130, 195, 471, 674
TaiI ACGT 4 cut(s) 178, 206, 724, 927
TaqI TCGA 1 cut(s) 270
TasI AATT 7 cut(s) 361, 584, 816, 952, 957, 1031, 1202
TfiI GAWTC 2 cut(s) 43, 295
Tru1I TTAA 2 cut(s) 1097, 1182
Tru9I TTAA 2 cut(s) 1097, 1182
TscAI CASTG 3 cut(s) 659, 973, 1065
TseI GCWGC 4 cut(s) 54, 218, 278, 1138
TspDTI ATGAA 6 cut(s) 92, 186, 495, 891, 896, 1025
TspRI CASTG 3 cut(s) 659, 973, 1065
Tth111I GACNNNGTC 1 cut(s) 1054
Van91I CCANNNNNTGG 1 cut(s) 610
VpaK11BI GGWCC 3 cut(s) 476, 1151, 1197
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XmaJI CCTAGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.