Rh2CG634200

Kelch repeat-containing protein At3g27220-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
80610318 .. 80613689
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG634200.1

Sequence Viewer

Length: 1164 bp
ATGGCCAGGCTTACCCAAAATCACACCACTTCTTCTTCTTCTTCTTCTTCAAAATTGAAATGGGTGTTTCTGACATGTTGCATGGCTCTGCTTGGAGCGGCTCTAATTGTAGATTTCTTCTGGGCTTCATCTTCTTATTCTTCCTCTGCGTATTCGATTATTGGTTCTGGTTTGGAGCTCCAGAAAACTCCGACCCTTGTGGTACCAAATGCCACAGTCAACAATGCTGGCCAGAAAGAAGTTTTGGGAGACAAAAATGAACGTGTTCCTGAGAGATTACTGTCTGGGACGTTTGCTGATATAGCTGCACCTGAGCTACCATGGGAGGAGATGCCACCAGCACCTGTACCTCGTCTCGATGGAGCTGCAATACAGATCAAGAATCTATTTTATGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATGTATTCAATTTCTCCGACAATACCTGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTGGCCTCTGATGGGAGATACATATATGTGATATCAGGACAGTATGGTCCCCAATGCAGAGGGCCTACAGCTCGTTCATTTGTGTTGGACACCGAGACAAAGAAATGGAGTAGTATACCCCCATTACCTTCTCCTAGGTATGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGCCATACGCCTGGTGTGGAGCACTGGAGTATTGCTGTGAACGGTGGTAAAGCATTGGAGGAAAAGTGGCGGGAAGAAGTACCTATTCCACGTGGAGGGCCACATAGGGCTTGTGTTGTAATCAATGATCGCCTCTTTGTTATTGGCGGTCAAGAGGGTGATTTTATGGCCAAGCCCGGTTCTCCAATTTTCAAATGCTCGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGATGAAATGAAATGGAAAGTGTTACCTCCTATGCCGAAACCAAACTCTCACGTAGAGTGTGCTTGGGTAGTTCTCAACAATTCAATTATCATCACTGGCGGTACAACAGAAAAGAACCCAATCACCAAAAGGATGATCCTCGTCGGGGAGATCTTCCAATTTCATTTGGACTCAATGGTATTAATCTTCTCCTATCATCATTAA

Protein Analysis

387

Amino Acids

42.97

Weight (kDa)

7.7

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 122 - 354 4.5e-20 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 127 - 294 4e-08 Attractin/LZTR1 beta-propeller
Beta-prop_FBX42 PF13415 170 - 361 2.7e-10 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 171 - 241 2e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27220
fragaria_vesca FvH4_6g52971
malus_domestica MD17G1015900.v1.1
prunus_persica Prupe.3G302200_v2.0.a1
pyrus_communis pycom17g01280
rosa_chinensis RchiOBHm_Chr2g0174691
rosa_laevigata RLG00000022286
rosa_multiflora Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii Rroxscaffold_2G00077930
rosa_rugosa Rorug02G0578800 Rorug02G0578900
rosa_samantha Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana Rw2G054070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 561
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 697
AccBSI CCGCTC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 631
AccII CGCG 1 cut(s) 919
AciI CCGC 5 cut(s) 98, 718, 787, 864, 1059
AclWI GGATC 1 cut(s) 1090
AcoI YGGCCR 3 cut(s) 3, 229, 885
AcvI CACGTG 1 cut(s) 809
AfaI GTAC 4 cut(s) 204, 348, 798, 1063
AfiI CCNNNNNNNGG 4 cut(s) 528, 697, 812, 1105
AflIII ACRYGT 2 cut(s) 74, 262
AgsI TTSAA 5 cut(s) 51, 58, 448, 910, 1044
AjnI CCWGG 3 cut(s) 5, 464, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 5 cut(s) 178, 305, 316, 365, 587
AluI AGCT 5 cut(s) 178, 305, 316, 365, 587
Alw21I GWGCWC 2 cut(s) 180, 741
Alw26I GTCTC 3 cut(s) 243, 359, 605
AlwI GGATC 1 cut(s) 1090
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 6 cut(s) 3, 229, 519, 578, 815, 885
ApeKI GCWGC 2 cut(s) 305, 365
AseI ATTAAT 1 cut(s) 1142
Asp700I GAANNNNTTC 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 202
AspA2I CCTAGG 1 cut(s) 650
AspLEI GCGC 1 cut(s) 921
AspS9I GGNCC 3 cut(s) 563, 578, 815
AsuC2I CCSGG 1 cut(s) 894
AsuHPI GGTGA 2 cut(s) 887, 1075
AvaII GGWCC 1 cut(s) 563
AvrII CCTAGG 1 cut(s) 650
BalI TGGCCA 3 cut(s) 5, 231, 887
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 809
Bbv12I GWGCWC 2 cut(s) 180, 741
BbvI GCAGC 2 cut(s) 292, 352
BccI CCATC 4 cut(s) 353, 490, 521, 691
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 3 cut(s) 7, 466, 729
BcnI CCSGG 1 cut(s) 894
BcoDI GTCTC 3 cut(s) 243, 359, 605
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 582
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 3 cut(s) 99, 306, 366
BlnI CCTAGG 1 cut(s) 650
BlsI GCNGC 3 cut(s) 100, 307, 367
Bme1390I CCNGG 4 cut(s) 7, 466, 729, 894
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 3 cut(s) 563, 578, 815
BmiI GGNNCC 3 cut(s) 204, 565, 689
BmrFI CCNGG 4 cut(s) 7, 466, 729, 894
BmsI GCATC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 672, 704
BpmI CTGGAG 3 cut(s) 164, 645, 763
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 894
BsaAI YACGTR 2 cut(s) 809, 1012
BsaJI CCNNGG 3 cut(s) 320, 465, 650
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 4 cut(s) 528, 697, 812, 1105
Bse1I ACTGG 2 cut(s) 746, 1060
BseBI CCWGG 3 cut(s) 7, 466, 729
BseDI CCNNGG 3 cut(s) 320, 465, 650
BseGI GGATG 1 cut(s) 1098
BseLI CCNNNNNNNGG 4 cut(s) 528, 697, 812, 1105
BseMII CTCAG 2 cut(s) 261, 303
BseNI ACTGG 2 cut(s) 746, 1060
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 292, 352
BsgI GTGCAG 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 919
BshFI GGCC 6 cut(s) 5, 231, 521, 580, 817, 887
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 2 cut(s) 180, 741
BsiSI CCGG 1 cut(s) 894
BslFI GGGAC 3 cut(s) 301, 513, 549
BslI CCNNNNNNNGG 4 cut(s) 528, 697, 812, 1105
BsmAI GTCTC 3 cut(s) 243, 359, 605
BsmBI CGTCTC 1 cut(s) 359
BsmFI GGGAC 3 cut(s) 301, 513, 549
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 6 cut(s) 5, 231, 521, 580, 817, 887
Bsp1286I GDGCHC 2 cut(s) 180, 741
Bsp143I GATC 4 cut(s) 375, 844, 1095, 1110
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 5 cut(s) 98, 718, 787, 864, 1059
BspANI GGCC 6 cut(s) 5, 231, 521, 580, 817, 887
BspCNI CTCAG 2 cut(s) 262, 304
BspFNI CGCG 1 cut(s) 919
BspLI GGNNCC 3 cut(s) 204, 565, 689
BspPI GGATC 1 cut(s) 1090
BspT107I GGYRCC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 746, 1060
BssECI CCNNGG 3 cut(s) 320, 465, 650
BssMI GATC 4 cut(s) 375, 844, 1095, 1110
BssNAI GTATAC 1 cut(s) 632
BssT1I CCWWGG 2 cut(s) 320, 650
Bst1107I GTATAC 1 cut(s) 632
Bst2UI CCWGG 3 cut(s) 7, 466, 729
Bst4CI ACNGT 4 cut(s) 217, 282, 558, 761
BstBAI YACGTR 2 cut(s) 809, 1012
BstC8I GCNNGC 4 cut(s) 229, 686, 917, 923
BstDEI CTNAG 2 cut(s) 270, 312
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 1098
BstFNI CGCG 1 cut(s) 919
BstHHI GCGC 1 cut(s) 921
BstKTI GATC 4 cut(s) 378, 847, 1098, 1113
BstMAI GTCTC 3 cut(s) 243, 359, 605
BstMBI GATC 4 cut(s) 375, 844, 1095, 1110
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 3 cut(s) 7, 466, 729
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 4 cut(s) 5, 464, 727, 892
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 292, 352
BstX2I RGATCY 1 cut(s) 1110
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 1 cut(s) 1110
BstZ17I GTATAC 1 cut(s) 632
BsuRI GGCC 6 cut(s) 5, 231, 521, 580, 817, 887
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 1 cut(s) 1098
BtsIMutI CAGTG 2 cut(s) 739, 1053
Cac8I GCNNGC 4 cut(s) 229, 686, 917, 923
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 1 cut(s) 921
Cfr13I GGNCC 3 cut(s) 563, 578, 815
Csp6I GTAC 4 cut(s) 203, 347, 797, 1062
CviAII CATG 6 cut(s) 75, 82, 321, 434, 692, 926
CviQI GTAC 4 cut(s) 203, 347, 797, 1062
DdeI CTNAG 2 cut(s) 270, 312
DpnI GATC 4 cut(s) 377, 846, 1097, 1112
DpnII GATC 4 cut(s) 375, 844, 1095, 1110
DrdI GACNNNNNNGTC 1 cut(s) 561
DseDI GACNNNNNNGTC 1 cut(s) 561
EaeI YGGCCR 3 cut(s) 3, 229, 885
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 320, 650
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 178
Eco72I CACGTG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 3 cut(s) 5, 464, 727
EcoRV GATATC 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 320, 650
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 320, 650
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 6 cut(s) 78, 85, 324, 437, 695, 929
FaqI GGGAC 3 cut(s) 301, 513, 549
FatI CATG 6 cut(s) 74, 81, 320, 433, 691, 925
FauI CCCGC 1 cut(s) 780
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 3 cut(s) 99, 306, 366
FokI GGATG 1 cut(s) 1105
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 99, 306, 366
FspBI CTAG 1 cut(s) 651
GlaI GCGC 1 cut(s) 920
GluI GCNGC 3 cut(s) 99, 306, 366
GsuI CTGGAG 3 cut(s) 164, 645, 763
HaeIII GGCC 6 cut(s) 5, 231, 521, 580, 817, 887
HapII CCGG 1 cut(s) 894
HhaI GCGC 1 cut(s) 921
Hin1II CATG 6 cut(s) 78, 85, 324, 437, 695, 929
Hin6I GCGC 1 cut(s) 919
HinP1I GCGC 1 cut(s) 919
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 382, 1130
HpaII CCGG 1 cut(s) 894
HphI GGTGA 2 cut(s) 887, 1075
Hpy166II GTNNAC 3 cut(s) 220, 632, 757
Hpy188I TCNGA 4 cut(s) 72, 192, 457, 526
Hpy188III TCNNGA 7 cut(s) 181, 269, 356, 379, 416, 552, 869
Hpy8I GTNNAC 3 cut(s) 220, 632, 757
Hpy99I CGWCG 1 cut(s) 1106
HpyAV CCTTC 2 cut(s) 468, 654
HpyCH4III ACNGT 4 cut(s) 217, 282, 558, 761
HpyCH4IV ACGT 4 cut(s) 262, 290, 808, 1011
HpyCH4V TGCA 6 cut(s) 81, 308, 368, 401, 427, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 270, 312
HpySE526I ACGT 4 cut(s) 262, 290, 808, 1011
Hsp92II CATG 6 cut(s) 78, 85, 324, 437, 695, 929
HspAI GCGC 1 cut(s) 919
KpnI GGTACC 1 cut(s) 206
Kzo9I GATC 4 cut(s) 375, 844, 1095, 1110
LmnI GCTCC 7 cut(s) 95, 175, 183, 362, 664, 693, 736
Lsp1109I GCAGC 2 cut(s) 292, 352
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 651
MaeII ACGT 4 cut(s) 262, 290, 808, 1011
MaeIII GTNAC 1 cut(s) 981
MalI GATC 4 cut(s) 377, 846, 1097, 1112
MbiI CCGCTC 1 cut(s) 98
MboI GATC 4 cut(s) 375, 844, 1095, 1110
MflI RGATCY 1 cut(s) 1110
MhlI GDGCHC 2 cut(s) 180, 741
MlsI TGGCCA 3 cut(s) 5, 231, 887
MluCI AATT 8 cut(s) 53, 105, 448, 671, 903, 1039, 1044, 1118
MluNI TGGCCA 3 cut(s) 5, 231, 887
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 3 cut(s) 215, 480, 582
Mox20I TGGCCA 3 cut(s) 5, 231, 887
MroXI GAANNNNTTC 1 cut(s) 264
MscI TGGCCA 3 cut(s) 5, 231, 887
MseI TTAA 2 cut(s) 1142, 1162
MslI CAYNNNNRTG 3 cut(s) 432, 438, 542
Msp20I TGGCCA 3 cut(s) 5, 231, 887
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 4 cut(s) 7, 466, 729, 894
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 3 cut(s) 7, 466, 729
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 894
NcoI CCATGG 1 cut(s) 320
NdeII GATC 4 cut(s) 375, 844, 1095, 1110
NlaIII CATG 6 cut(s) 78, 85, 324, 437, 695, 929
NlaIV GGNNCC 3 cut(s) 204, 565, 689
NspI RCATGY 1 cut(s) 78
PciI ACATGT 1 cut(s) 74
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 697
PkrI GCNGC 3 cut(s) 100, 307, 367
PleI GAGTC 1 cut(s) 1124
PmaCI CACGTG 1 cut(s) 809
PmlI CACGTG 1 cut(s) 809
PpsI GAGTC 1 cut(s) 1124
Ppu21I YACGTR 2 cut(s) 809, 1012
PscI ACATGT 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 1142
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 5, 464, 727
PspCI CACGTG 1 cut(s) 809
PspGI CCWGG 3 cut(s) 5, 464, 727
PspN4I GGNNCC 3 cut(s) 204, 565, 689
PspPI GGNCC 3 cut(s) 563, 578, 815
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 1110
RsaI GTAC 4 cut(s) 204, 348, 798, 1063
RsaNI GTAC 4 cut(s) 203, 347, 797, 1062
RseI CAYNNNNRTG 3 cut(s) 432, 438, 542
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 1142, 1162
SatI GCNGC 3 cut(s) 99, 306, 366
Sau3AI GATC 4 cut(s) 375, 844, 1095, 1110
Sau96I GGNCC 3 cut(s) 563, 578, 815
SchI GAGTC 1 cut(s) 1124
ScrFI CCNGG 4 cut(s) 7, 466, 729, 894
SduI GDGCHC 2 cut(s) 180, 741
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 3 cut(s) 432, 438, 542
Sse9I AATT 8 cut(s) 53, 105, 448, 671, 903, 1039, 1044, 1118
SsiI CCGC 5 cut(s) 98, 718, 787, 864, 1059
SspMI CTAG 1 cut(s) 651
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 4 cut(s) 5, 464, 727, 892
StyI CCWWGG 2 cut(s) 320, 650
TaaI ACNGT 4 cut(s) 217, 282, 558, 761
TaiI ACGT 4 cut(s) 265, 293, 811, 1014
TaqI TCGA 2 cut(s) 155, 357
TasI AATT 8 cut(s) 53, 105, 448, 671, 903, 1039, 1044, 1118
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 1142, 1162
Tru9I TTAA 2 cut(s) 1142, 1162
TscAI CASTG 2 cut(s) 746, 1060
TseI GCWGC 2 cut(s) 305, 365
TspDTI ATGAA 6 cut(s) 117, 273, 582, 978, 983, 1112
TspRI CASTG 2 cut(s) 746, 1060
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 563
VspI ATTAAT 1 cut(s) 1142
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XmaJI CCTAGG 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.