Rmu_sc0007189.1_g000001

Kelch repeat-containing protein At3g27220-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007189.1
Physical Location & Seq
Reverse (-)
1844 .. 4202
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007189.1_g000001.1.cds

Sequence Viewer

Length: 1290 bp
atgataacttttggcaggtatgctccagcaactcaattatggagaggcaggctccatgtgatgggtggtagcaaagaaaaccgccatacgcctggtgtggagcactggagtattgctgtgaacggtggtaaagcattggaggaaaagtggcgggaagaagtacctattccacgtggagggccacatagggcttgtgttgtaatcaatgatcgcctctttgttattggcggtcaagagggtgattttatggccaagcctggttctccaattttcaaatgctcacgcaggcatgaggtggtctatgctgatgtttatatgcttgatgatgaaatgaaatggaaagtgttacctcctatgccgaaaccaaactctcacgtagagtgtgcttgggtagttctcaacaattcaattatcatcactggcggtacaacagaaaagaacccaatcaccaaaaggatgatcctcgtcggggagatcttccaatttcatttggactcaatgacatggtcagtgattgggaggcttccataccgagtaaaaaccacattaactgctttttgggatggctacttgtattttacatccgggcagcgagacagaggaccagataatccacagccaagacaggtggttaaagatatgtttaggaccaaattgagcttgaatccccactcctccatctccgccgtcttgactaaatcatccactggcttgtatttcgtccctcttgatcttgatcatgatgttagggcaggtaatgtcagctatgatgaaggggtatactgcaatggcgctgttcattgggtaggcatggatagtgagatgtcatactatcacctagatgaagagcgtgttggatttgttaatggttctcctacgccttcggagaagaatttattttggaggtatttttgggagtctcatggtggtggccatttgcatcttattgatatttatcggcctaatcttactgcatttgaagtgttggagatggggagagactactctggttggtttgtcaagtaccgtgttgatctggatcccatattctctacttacccgcagctcccatggtattttattgttgctctctttattgctcgagaggaaactgaaggagaggaaagttcatctttgttgctgcatattcctggtaaagtcatctcttataatcttaggagcaatactttcaaatcttttgagctacctcctgaggccggcggtaatgatccttgtaacagagttggccatcaaaattatcgatatatggagaatttggcttgtgtttga

Protein Analysis

429

Amino Acids

49.01

Weight (kDa)

6.47

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27220
fragaria_vesca FvH4_6g52971
malus_domestica MD17G1015900.v1.1
prunus_persica Prupe.3G302200_v2.0.a1
pyrus_communis pycom17g01280
rosa_chinensis RchiOBHm_Chr2g0174691
rosa_laevigata RLG00000022286
rosa_multiflora Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii Rroxscaffold_2G00077930
rosa_rugosa Rorug02G0578800 Rorug02G0578900
rosa_samantha Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana Rw2G054070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1170
Acc36I ACCTGC 2 cut(s) 6, 743
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 1 cut(s) 780
AciI CCGC 7 cut(s) 82, 151, 228, 423, 684, 1061, 1221
AclWI GGATC 4 cut(s) 454, 1034, 1047, 1223
AcoI YGGCCR 3 cut(s) 249, 931, 1246
AcsI RAATTY 2 cut(s) 892, 1273
AcuI CTGAAG 1 cut(s) 1134
AcvI CACGTG 1 cut(s) 173
AfaI GTAC 3 cut(s) 162, 427, 1025
AfiI CCNNNNNNNGG 4 cut(s) 61, 176, 469, 1217
AgsI TTSAA 5 cut(s) 274, 408, 664, 980, 1192
AjnI CCWGG 3 cut(s) 91, 256, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 837, 869
AluBI AGCT 4 cut(s) 660, 765, 1066, 1204
AluI AGCT 4 cut(s) 660, 765, 1066, 1204
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 588, 924, 993
AlwI GGATC 4 cut(s) 454, 1034, 1047, 1223
Ama87I CYCGRG 1 cut(s) 1101
AoxI GGCC 6 cut(s) 179, 249, 931, 959, 1215, 1246
ApeKI GCWGC 3 cut(s) 589, 1063, 1141
ApoI RAATTY 2 cut(s) 892, 1273
AspLEI GCGC 1 cut(s) 794
AspS9I GGNCC 3 cut(s) 179, 602, 648
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 3 cut(s) 251, 439, 827
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 2 cut(s) 602, 648
AxyI CCTNAGG 1 cut(s) 1212
BalI TGGCCA 3 cut(s) 251, 933, 1248
BamHI GGATCC 1 cut(s) 1039
BbrPI CACGTG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 601, 1075, 1128
BccI CCATC 5 cut(s) 55, 557, 686, 985, 1257
BceAI ACGGC 1 cut(s) 671
BciT130I CCWGG 3 cut(s) 93, 258, 1152
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 3 cut(s) 588, 924, 993
BfaI CTAG 1 cut(s) 839
BfoI RGCGCY 1 cut(s) 795
BfuAI ACCTGC 2 cut(s) 6, 743
BglII AGATCT 1 cut(s) 474
BisI GCNGC 3 cut(s) 590, 1064, 1142
BlsI GCNGC 3 cut(s) 591, 1065, 1143
Bme1390I CCNGG 4 cut(s) 93, 258, 586, 1152
Bme18I GGWCC 2 cut(s) 602, 648
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 3 cut(s) 179, 602, 648
BmiI GGNNCC 2 cut(s) 53, 1041
BmrFI CCNGG 4 cut(s) 93, 258, 586, 1152
BmsI GCATC 1 cut(s) 949
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 2 cut(s) 9, 127
BpuMI CCSGG 1 cut(s) 586
Bsa29I ATCGAT 1 cut(s) 1261
BsaAI YACGTR 2 cut(s) 173, 376
BsaBI GATNNNNATC 3 cut(s) 735, 954, 1038
BsaJI CCNNGG 1 cut(s) 1070
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 176, 469, 1217
Bse118I RCCGGY 1 cut(s) 1217
Bse1I ACTGG 3 cut(s) 110, 424, 712
Bse21I CCTNAGG 1 cut(s) 1212
Bse3DI GCAATG 1 cut(s) 793
Bse8I GATNNNNATC 3 cut(s) 735, 954, 1038
BseBI CCWGG 3 cut(s) 93, 258, 1152
BseCI ATCGAT 1 cut(s) 1261
BseDI CCNNGG 1 cut(s) 1070
BseGI GGATG 4 cut(s) 462, 568, 581, 701
BseJI GATNNNNATC 3 cut(s) 735, 954, 1038
BseLI CCNNNNNNNGG 4 cut(s) 61, 176, 469, 1217
BseMI GCAATG 1 cut(s) 793
BseMII CTCAG 1 cut(s) 1203
BseNI ACTGG 3 cut(s) 110, 424, 712
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 3 cut(s) 601, 1075, 1128
BshFI GGCC 6 cut(s) 181, 251, 933, 961, 1217, 1248
BshVI ATCGAT 1 cut(s) 1261
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 2 cut(s) 585, 1218
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 4 cut(s) 61, 176, 469, 1217
BsmAI GTCTC 3 cut(s) 588, 924, 993
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 6 cut(s) 181, 251, 933, 961, 1217, 1248
BsoBI CYCGRG 1 cut(s) 1101
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
Bsp19I CCATGG 1 cut(s) 1070
BspACI CCGC 7 cut(s) 82, 151, 228, 423, 684, 1061, 1221
BspANI GGCC 6 cut(s) 181, 251, 933, 961, 1217, 1248
BspCNI CTCAG 1 cut(s) 1204
BspDI ATCGAT 1 cut(s) 1261
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 53, 1041
BspMI ACCTGC 2 cut(s) 6, 743
BspPI GGATC 4 cut(s) 454, 1034, 1047, 1223
BspQI GCTCTTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 793
BsrFI RCCGGY 1 cut(s) 1217
BsrI ACTGG 3 cut(s) 110, 424, 712
BssAI RCCGGY 1 cut(s) 1217
BssECI CCNNGG 1 cut(s) 1070
BssMI GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
BssNAI GTATAC 1 cut(s) 781
BssT1I CCWWGG 1 cut(s) 1070
Bst1107I GTATAC 1 cut(s) 781
Bst2UI CCWGG 3 cut(s) 93, 258, 1152
Bst4CI ACNGT 2 cut(s) 125, 1028
Bst6I CTCTTC 1 cut(s) 840
BstBAI YACGTR 2 cut(s) 173, 376
BstC8I GCNNGC 3 cut(s) 50, 287, 1219
BstDEI CTNAG 2 cut(s) 1175, 1212
BstDSI CCRYGG 1 cut(s) 1070
BstF5I GGATG 4 cut(s) 462, 568, 581, 701
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 8 cut(s) 211, 462, 477, 733, 739, 1036, 1042, 1231
BstMAI GTCTC 3 cut(s) 588, 924, 993
BstMBI GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
BstNI CCWGG 3 cut(s) 93, 258, 1152
BstSCI CCNGG 4 cut(s) 91, 256, 584, 1150
BstV1I GCAGC 3 cut(s) 601, 1075, 1128
BstX2I RGATCY 2 cut(s) 474, 1039
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 2 cut(s) 474, 1039
BstZ17I GTATAC 1 cut(s) 781
Bsu15I ATCGAT 1 cut(s) 1261
Bsu36I CCTNAGG 1 cut(s) 1212
BsuRI GGCC 6 cut(s) 181, 251, 933, 961, 1217, 1248
BsuTUI ATCGAT 1 cut(s) 1261
BtgI CCRYGG 1 cut(s) 1070
BtsCI GGATG 4 cut(s) 462, 568, 581, 701
BtsIMutI CAGTG 4 cut(s) 103, 417, 516, 705
BveI ACCTGC 2 cut(s) 6, 743
Cac8I GCNNGC 3 cut(s) 50, 287, 1219
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 794
Cfr10I RCCGGY 1 cut(s) 1217
Cfr13I GGNCC 3 cut(s) 179, 602, 648
ClaI ATCGAT 1 cut(s) 1261
Csp6I GTAC 3 cut(s) 161, 426, 1024
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 7 cut(s) 56, 290, 504, 740, 811, 923, 1071
CviQI GTAC 3 cut(s) 161, 426, 1024
DdeI CTNAG 2 cut(s) 1175, 1212
DpnI GATC 8 cut(s) 210, 461, 476, 732, 738, 1035, 1041, 1230
DpnII GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
EaeI YGGCCR 3 cut(s) 249, 931, 1246
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
EciI GGCGGA 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 1070
Eco47I GGWCC 2 cut(s) 602, 648
Eco57I CTGAAG 1 cut(s) 1134
Eco72I CACGTG 1 cut(s) 173
Eco81I CCTNAGG 1 cut(s) 1212
Eco88I CYCGRG 1 cut(s) 1101
EcoRII CCWGG 3 cut(s) 91, 256, 1150
EcoT14I CCWWGG 1 cut(s) 1070
ErhI CCWWGG 1 cut(s) 1070
FaeI CATG 7 cut(s) 59, 293, 507, 743, 814, 926, 1074
FalI AAGNNNNNCTT 2 cut(s) 1117, 1149
FaqI GGGAC 1 cut(s) 707
FatI CATG 7 cut(s) 55, 289, 503, 739, 810, 922, 1070
FauI CCCGC 2 cut(s) 144, 1068
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 590, 1064, 1142
FokI GGATG 4 cut(s) 469, 568, 575, 688
Fsp4HI GCNGC 3 cut(s) 590, 1064, 1142
FspBI CTAG 1 cut(s) 839
GlaI GCGC 1 cut(s) 793
GluI GCNGC 3 cut(s) 590, 1064, 1142
GsuI CTGGAG 2 cut(s) 9, 127
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 6 cut(s) 181, 251, 933, 961, 1217, 1248
HapII CCGG 2 cut(s) 585, 1218
HhaI GCGC 1 cut(s) 794
Hin1II CATG 7 cut(s) 59, 293, 507, 743, 814, 926, 1074
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HinfI GANTC 3 cut(s) 494, 664, 917
HpaII CCGG 2 cut(s) 585, 1218
HphI GGTGA 3 cut(s) 251, 439, 827
Hpy166II GTNNAC 2 cut(s) 121, 781
Hpy188I TCNGA 1 cut(s) 886
Hpy188III TCNNGA 8 cut(s) 233, 691, 728, 734, 740, 1037, 1103, 1211
Hpy8I GTNNAC 2 cut(s) 121, 781
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 767, 891, 1109
HpyCH4III ACNGT 2 cut(s) 125, 1028
HpyCH4IV ACGT 2 cut(s) 172, 375
HpyCH4V TGCA 4 cut(s) 786, 940, 974, 1144
HpyF3I CTNAG 2 cut(s) 1175, 1212
HpySE526I ACGT 2 cut(s) 172, 375
Hsp92II CATG 7 cut(s) 59, 293, 507, 743, 814, 926, 1074
HspAI GCGC 1 cut(s) 792
KroI GCCGGC 1 cut(s) 1217
KroNI GCCGGC 1 cut(s) 1219
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 5 cut(s) 28, 57, 100, 1071, 1179
Lsp1109I GCAGC 3 cut(s) 601, 1075, 1128
LweI GCATC 1 cut(s) 949
MaeI CTAG 1 cut(s) 839
MaeII ACGT 2 cut(s) 172, 375
MaeIII GTNAC 2 cut(s) 345, 1235
MalI GATC 8 cut(s) 210, 461, 476, 732, 738, 1035, 1041, 1230
MboI GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
MboII GAAGA 4 cut(s) 167, 469, 857, 901
MflI RGATCY 2 cut(s) 474, 1039
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 3 cut(s) 251, 933, 1248
MluCI AATT 9 cut(s) 35, 267, 403, 408, 482, 653, 892, 1255, 1273
MluNI TGGCCA 3 cut(s) 251, 933, 1248
MlyI GAGTC 2 cut(s) 488, 926
MmeI TCCRAC 2 cut(s) 835, 966
Mox20I TGGCCA 3 cut(s) 251, 933, 1248
MroNI GCCGGC 1 cut(s) 1217
MscI TGGCCA 3 cut(s) 251, 933, 1248
MseI TTAA 3 cut(s) 548, 633, 864
MslI CAYNNNNRTG 2 cut(s) 840, 927
Msp20I TGGCCA 3 cut(s) 251, 933, 1248
MspI CCGG 2 cut(s) 585, 1218
MspR9I CCNGG 4 cut(s) 93, 258, 586, 1152
MvaI CCWGG 3 cut(s) 93, 258, 1152
NaeI GCCGGC 1 cut(s) 1219
NciI CCSGG 1 cut(s) 586
NcoI CCATGG 1 cut(s) 1070
NdeII GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
NgoMIV GCCGGC 1 cut(s) 1217
NlaIII CATG 7 cut(s) 59, 293, 507, 743, 814, 926, 1074
NlaIV GGNNCC 2 cut(s) 53, 1041
PaeR7I CTCGAG 1 cut(s) 1101
PagI TCATGA 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 840
PdiI GCCGGC 1 cut(s) 1219
PfeI GAWTC 1 cut(s) 664
PflFI GACNNNGTC 1 cut(s) 505
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 3 cut(s) 591, 1065, 1143
PleI GAGTC 2 cut(s) 488, 925
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
PpsI GAGTC 2 cut(s) 488, 925
Ppu21I YACGTR 2 cut(s) 173, 376
PsiI TTATAA 1 cut(s) 1170
Psp6I CCWGG 3 cut(s) 91, 256, 1150
PspCI CACGTG 1 cut(s) 173
PspGI CCWGG 3 cut(s) 91, 256, 1150
PspN4I GGNNCC 2 cut(s) 53, 1041
PspPI GGNCC 3 cut(s) 179, 602, 648
PsuI RGATCY 2 cut(s) 474, 1039
PsyI GACNNNGTC 1 cut(s) 505
RsaI GTAC 3 cut(s) 162, 427, 1025
RsaNI GTAC 3 cut(s) 161, 426, 1024
RseI CAYNNNNRTG 2 cut(s) 840, 927
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 3 cut(s) 548, 633, 864
SatI GCNGC 3 cut(s) 590, 1064, 1142
Sau3AI GATC 8 cut(s) 208, 459, 474, 730, 736, 1033, 1039, 1228
Sau96I GGNCC 3 cut(s) 179, 602, 648
SchI GAGTC 2 cut(s) 488, 926
ScrFI CCNGG 4 cut(s) 93, 258, 586, 1152
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 949
Sfr274I CTCGAG 1 cut(s) 1101
SinI GGWCC 2 cut(s) 602, 648
SlaI CTCGAG 1 cut(s) 1101
SmiMI CAYNNNNRTG 2 cut(s) 840, 927
SmlI CTYRAG 1 cut(s) 1101
SmoI CTYRAG 1 cut(s) 1101
Sse9I AATT 9 cut(s) 35, 267, 403, 408, 482, 653, 892, 1255, 1273
SsiI CCGC 7 cut(s) 82, 151, 228, 423, 684, 1061, 1221
SspMI CTAG 1 cut(s) 839
StyD4I CCNGG 4 cut(s) 91, 256, 584, 1150
StyI CCWWGG 1 cut(s) 1070
TaaI ACNGT 2 cut(s) 125, 1028
TaiI ACGT 2 cut(s) 175, 378
TaqI TCGA 2 cut(s) 1102, 1261
TasI AATT 9 cut(s) 35, 267, 403, 408, 482, 653, 892, 1255, 1273
TfiI GAWTC 1 cut(s) 664
Tru1I TTAA 3 cut(s) 548, 633, 864
Tru9I TTAA 3 cut(s) 548, 633, 864
TscAI CASTG 4 cut(s) 110, 424, 516, 712
TseI GCWGC 3 cut(s) 589, 1063, 1141
TspDTI ATGAA 7 cut(s) 342, 347, 476, 786, 788, 858, 1119
TspRI CASTG 4 cut(s) 110, 424, 516, 712
Tth111I GACNNNGTC 1 cut(s) 505
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 602, 648
XapI RAATTY 2 cut(s) 892, 1273
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 1101
XmiI GTMKAC 1 cut(s) 780
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.