Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013906

Physical Location & Seq

Genomic Coordinates Forward (+)

88288117 .. 88292075

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG671000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGGACGAAGGAGGAGGAGAAAACTCCGACCCTTGTGGTACCAAATGCCACAGTCAACAATGCTGGCCAGAAAGAAGTTTTGGGAGACAAAAATGAACGTGTTCCTGAGAGATTACTGTCTGGGACGTTTGCTGATATAGCTGCACCTGAGCTACTATGGGAGGAGATGCCACCAGCACCTGTACCTCGTCTCGATGGAGCTGCCATACAGATCAATAATCTATTTTATGTGTTTGCAGGATATGGCACTCTTGACTATGTGCATTCTCATGTTGATGTATTCAATTTCTCCGACAATACCTGGGGAGGAAGGTTTGATATGCCAAAAGAGATGGGACATTCACATTTAGGAGTGGCCTCTGATGGGAGATACATATATGTGATATCAGGACAGTATGGTCCCCAATGCAGAGGGCCTACAGCTCGTTCATTTGTGTTGGACACCGAGACAAAGAAATGGAGTAGTATACCCCCATTACCTTCTCCTAGGTATGCTCCAGCAACTCAATTATGGAGAGGCAGGCTCCATGTGATGGGTGGTAGCAAAGAAAACCGCCATACGCCTGGTGTGGAGCACTGGAGTATTGCTGTGAACGGTGGTAAAGCATTGGAGGAAAAGTGGCGGGAAGAAGTACCTATTCCACGTGGAGGGCCACATAGGGCTTGTGTTGTAATCAATGATCGCCTCTTTGTTATTGGCGGTCAAGAGGGTGATTTTATGGCCAAGCCTGGTTCTCCAATTTTCAAATGCTCGCGCAGGCATGAGGTGGTCTATGCTGATGTTTATATGCTTGATGATGAAATGAAATGGAAAGTGTTACCTCCTATGCCGAAACCAAACTCTCACATAGAGTGTGCTTGGGTAGTTCTCAACAATTCAATTATCATCACTGGCGGTACAACAGAAAAGAACCCAATCACCAAAAGGATGATCCTCGTCGGGGAGATATTCCAATTTCATTTGGACTCGATGACATGGTCAGTGATTGGGAGGCTTCCATACCGAGTAAAAACCACATTAACTGCTTTTTGGGATGGCTACTTGTATTTTACATCCGGACAGCGAGACAGAGGACCAGATAATCCACAGCCAAGACAGGTGGTTAAAGATATGTTTAGGACCAAATTGAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006091 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009061 GO:0009987 GO:0010498 GO:0012505 GO:0015980 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031410 GO:0031461 GO:0031625 GO:0031982 GO:0031984 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0055114 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097708 GO:0098791 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_4 Kelch_6

Protein Analysis

379

Amino Acids

42.72

Weight (kDa)

8.53

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	68 - 300	6.2e-20	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	74 - 240	3.9e-08	Attractin/LZTR1 beta-propeller
Beta-prop_FBX42	PF13415	116 - 239	2.3e-06	FBX42, beta-propeller domain
Kelch_FKB95	PF25210	117 - 186	2.1e-07	FKB95, Kelch-repeats domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27220
fragaria_vesca	FvH4_6g52971
malus_domestica	MD17G1015900.v1.1
prunus_persica	Prupe.3G302200_v2.0.a1
pyrus_communis	pycom17g01280
rosa_chinensis	RchiOBHm_Chr2g0174691
rosa_laevigata	RLG00000022286
rosa_multiflora	Rmu_co8519899.1_g000001 Rmu_sc0007189.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077930
rosa_rugosa	Rorug02G0578800 Rorug02G0578900
rosa_samantha	Rh2AG660100 Rh2BG671000 Rh2CG634200 Rh2DG684600
rosa_wichuraiana	Rw2G054070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	399
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	469
AccII	CGCG	1 cut(s)	757
AccIII	TCCGGA	1 cut(s)	1058
AciI	CCGC	4 cut(s)	556, 625, 702, 897
AclWI	GGATC	1 cut(s)	928
AcoI	YGGCCR	2 cut(s)	67, 723
AcvI	CACGTG	1 cut(s)	647
AfaI	GTAC	4 cut(s)	42, 186, 636, 901
AfiI	CCNNNNNNNGG	4 cut(s)	366, 535, 650, 943
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	286, 748, 882
AjnI	CCWGG	3 cut(s)	302, 565, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	143, 154, 203, 425, 1134
AluI	AGCT	5 cut(s)	143, 154, 203, 425, 1134
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	4 cut(s)	81, 197, 443, 1062
AlwI	GGATC	1 cut(s)	928
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	1058
AoxI	GGCC	5 cut(s)	67, 357, 416, 653, 723
ApeKI	GCWGC	2 cut(s)	143, 203
Asp700I	GAANNNNTTC	1 cut(s)	102
Asp718I	GGTACC	1 cut(s)	40
AspA2I	CCTAGG	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	5 cut(s)	401, 416, 653, 1076, 1122
AsuHPI	GGTGA	2 cut(s)	725, 913
AvaII	GGWCC	3 cut(s)	401, 1076, 1122
AvrII	CCTAGG	1 cut(s)	488
BalI	TGGCCA	2 cut(s)	69, 725
BanI	GGYRCC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	647
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	130, 190
BccI	CCATC	5 cut(s)	191, 328, 359, 529, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	3 cut(s)	304, 567, 732
BcoDI	GTCTC	4 cut(s)	81, 197, 443, 1062
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	2 cut(s)	144, 204
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	2 cut(s)	145, 205
Bme1390I	CCNGG	3 cut(s)	304, 567, 732
Bme18I	GGWCC	3 cut(s)	401, 1076, 1122
BmgT120I	GGNCC	5 cut(s)	401, 416, 653, 1076, 1122
BmiI	GGNNCC	3 cut(s)	42, 403, 527
BmrFI	CCNGG	3 cut(s)	304, 567, 732
BmsI	GCATC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
BpmI	CTGGAG	2 cut(s)	483, 601
Bpu10I	CCTNAGC	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	303, 488
BsaWI	WCCGGW	1 cut(s)	1058
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	4 cut(s)	366, 535, 650, 943
Bse1I	ACTGG	2 cut(s)	584, 898
BseAI	TCCGGA	1 cut(s)	1058
BseBI	CCWGG	3 cut(s)	304, 567, 732
BseDI	CCNNGG	2 cut(s)	303, 488
BseGI	GGATG	3 cut(s)	936, 1042, 1055
BseLI	CCNNNNNNNGG	4 cut(s)	366, 535, 650, 943
BseMII	CTCAG	2 cut(s)	99, 141
BseNI	ACTGG	2 cut(s)	584, 898
BseRI	GAGGAG	3 cut(s)	29, 32, 179
BseXI	GCAGC	2 cut(s)	130, 190
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	757
BshFI	GGCC	5 cut(s)	69, 359, 418, 655, 725
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	1059
BslFI	GGGAC	3 cut(s)	139, 351, 387
BslI	CCNNNNNNNGG	4 cut(s)	366, 535, 650, 943
BsmAI	GTCTC	4 cut(s)	81, 197, 443, 1062
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	3 cut(s)	139, 351, 387
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	5 cut(s)	69, 359, 418, 655, 725
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp13I	TCCGGA	1 cut(s)	1058
Bsp143I	GATC	3 cut(s)	213, 682, 933
BspACI	CCGC	4 cut(s)	556, 625, 702, 897
BspANI	GGCC	5 cut(s)	69, 359, 418, 655, 725
BspCNI	CTCAG	2 cut(s)	100, 142
BspEI	TCCGGA	1 cut(s)	1058
BspFNI	CGCG	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	42, 403, 527
BspPI	GGATC	1 cut(s)	928
BspT107I	GGYRCC	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	584, 898
BssECI	CCNNGG	2 cut(s)	303, 488
BssMI	GATC	3 cut(s)	213, 682, 933
BssNAI	GTATAC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	488
Bst1107I	GTATAC	1 cut(s)	470
Bst2UI	CCWGG	3 cut(s)	304, 567, 732
Bst4CI	ACNGT	4 cut(s)	55, 120, 396, 599
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	4 cut(s)	67, 524, 755, 761
BstDEI	CTNAG	2 cut(s)	108, 150
BstF5I	GGATG	3 cut(s)	936, 1042, 1055
BstFNI	CGCG	1 cut(s)	757
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	3 cut(s)	216, 685, 936
BstMAI	GTCTC	4 cut(s)	81, 197, 443, 1062
BstMBI	GATC	3 cut(s)	213, 682, 933
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	3 cut(s)	304, 567, 732
BstSCI	CCNGG	3 cut(s)	302, 565, 730
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	130, 190
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstZ17I	GTATAC	1 cut(s)	470
BsuRI	GGCC	5 cut(s)	69, 359, 418, 655, 725
BtsCI	GGATG	3 cut(s)	936, 1042, 1055
BtsIMutI	CAGTG	3 cut(s)	577, 891, 990
Cac8I	GCNNGC	4 cut(s)	67, 524, 755, 761
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	759
Cfr13I	GGNCC	5 cut(s)	401, 416, 653, 1076, 1122
Csp6I	GTAC	4 cut(s)	41, 185, 635, 900
CspCI	CAANNNNNGTGG	2 cut(s)	1083, 1118
CviAII	CATG	4 cut(s)	272, 530, 764, 978
CviQI	GTAC	4 cut(s)	41, 185, 635, 900
DdeI	CTNAG	2 cut(s)	108, 150
DpnI	GATC	3 cut(s)	215, 684, 935
DpnII	GATC	3 cut(s)	213, 682, 933
DrdI	GACNNNNNNGTC	1 cut(s)	399
DseDI	GACNNNNNNGTC	1 cut(s)	399
EaeI	YGGCCR	2 cut(s)	67, 723
Eco130I	CCWWGG	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	401, 1076, 1122
Eco72I	CACGTG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	3 cut(s)	302, 565, 730
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	4 cut(s)	275, 533, 767, 981
FaqI	GGGAC	3 cut(s)	139, 351, 387
FatI	CATG	4 cut(s)	271, 529, 763, 977
FauI	CCCGC	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	144, 204
FokI	GGATG	3 cut(s)	943, 1042, 1049
Fsp4HI	GCNGC	2 cut(s)	144, 204
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	2 cut(s)	144, 204
GsuI	CTGGAG	2 cut(s)	483, 601
HaeIII	GGCC	5 cut(s)	69, 359, 418, 655, 725
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	275, 533, 767, 981
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	968
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	725, 913
Hpy166II	GTNNAC	3 cut(s)	58, 470, 595
Hpy188I	TCNGA	3 cut(s)	30, 295, 364
Hpy188III	TCNNGA	6 cut(s)	107, 194, 254, 390, 707, 1059
Hpy8I	GTNNAC	3 cut(s)	58, 470, 595
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	3 cut(s)	4, 306, 492
HpyCH4III	ACNGT	4 cut(s)	55, 120, 396, 599
HpyCH4IV	ACGT	3 cut(s)	100, 128, 646
HpyCH4V	TGCA	4 cut(s)	146, 239, 265, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	108, 150
HpySE526I	ACGT	3 cut(s)	100, 128, 646
Hsp92II	CATG	4 cut(s)	275, 533, 767, 981
HspAI	GCGC	1 cut(s)	757
Kpn2I	TCCGGA	1 cut(s)	1058
KpnI	GGTACC	1 cut(s)	44
Kzo9I	GATC	3 cut(s)	213, 682, 933
LmnI	GCTCC	4 cut(s)	200, 502, 531, 574
Lsp1109I	GCAGC	2 cut(s)	130, 190
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	3 cut(s)	100, 128, 646
MaeIII	GTNAC	1 cut(s)	819
MalI	GATC	3 cut(s)	215, 684, 935
MboI	GATC	3 cut(s)	213, 682, 933
MboII	GAAGA	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	2 cut(s)	69, 725
MluCI	AATT	7 cut(s)	286, 509, 741, 877, 882, 956, 1127
MluNI	TGGCCA	2 cut(s)	69, 725
MlyI	GAGTC	1 cut(s)	962
MmeI	TCCRAC	3 cut(s)	53, 318, 420
Mox20I	TGGCCA	2 cut(s)	69, 725
MroI	TCCGGA	1 cut(s)	1058
MroXI	GAANNNNTTC	1 cut(s)	102
MscI	TGGCCA	2 cut(s)	69, 725
MseI	TTAA	2 cut(s)	1022, 1107
MslI	CAYNNNNRTG	3 cut(s)	270, 276, 380
Msp20I	TGGCCA	2 cut(s)	69, 725
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	3 cut(s)	304, 567, 732
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	3 cut(s)	304, 567, 732
MvnI	CGCG	1 cut(s)	757
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	213, 682, 933
NlaIII	CATG	4 cut(s)	275, 533, 767, 981
NlaIV	GGNNCC	3 cut(s)	42, 403, 527
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	979
PflMI	CCANNNNNTGG	1 cut(s)	535
PkrI	GCNGC	2 cut(s)	145, 205
PleI	GAGTC	1 cut(s)	962
PmaCI	CACGTG	1 cut(s)	647
PmlI	CACGTG	1 cut(s)	647
PpsI	GAGTC	1 cut(s)	962
Ppu21I	YACGTR	1 cut(s)	647
Psp6I	CCWGG	3 cut(s)	302, 565, 730
PspCI	CACGTG	1 cut(s)	647
PspGI	CCWGG	3 cut(s)	302, 565, 730
PspN4I	GGNNCC	3 cut(s)	42, 403, 527
PspPI	GGNCC	5 cut(s)	401, 416, 653, 1076, 1122
PstNI	CAGNNNCTG	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	979
RsaI	GTAC	4 cut(s)	42, 186, 636, 901
RsaNI	GTAC	4 cut(s)	41, 185, 635, 900
RseI	CAYNNNNRTG	3 cut(s)	270, 276, 380
SaqAI	TTAA	2 cut(s)	1022, 1107
SatI	GCNGC	2 cut(s)	144, 204
Sau3AI	GATC	3 cut(s)	213, 682, 933
Sau96I	GGNCC	5 cut(s)	401, 416, 653, 1076, 1122
SchI	GAGTC	1 cut(s)	962
ScrFI	CCNGG	3 cut(s)	304, 567, 732
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	3 cut(s)	401, 1076, 1122
SmiMI	CAYNNNNRTG	3 cut(s)	270, 276, 380
Sse9I	AATT	7 cut(s)	286, 509, 741, 877, 882, 956, 1127
SsiI	CCGC	4 cut(s)	556, 625, 702, 897
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	3 cut(s)	302, 565, 730
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	4 cut(s)	55, 120, 396, 599
TaiI	ACGT	3 cut(s)	103, 131, 649
TaqI	TCGA	2 cut(s)	195, 971
TasI	AATT	7 cut(s)	286, 509, 741, 877, 882, 956, 1127
Tru1I	TTAA	2 cut(s)	1022, 1107
Tru9I	TTAA	2 cut(s)	1022, 1107
TscAI	CASTG	3 cut(s)	584, 898, 990
TseI	GCWGC	2 cut(s)	143, 203
TspDTI	ATGAA	5 cut(s)	111, 420, 816, 821, 950
TspRI	CASTG	3 cut(s)	584, 898, 990
Tth111I	GACNNNGTC	1 cut(s)	979
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	3 cut(s)	401, 1076, 1122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmaJI	CCTAGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.